data_8GNK
#
_model_server_result.job_id            x30VquW7JglOBLGPSbHihg 
_model_server_result.datetime_utc      '2024-10-15 10:23:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gnk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    8GNK 
#
_exptl.entry_id    8GNK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GNK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GNK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 127 A CYS 164 1_555 A SG CYS 136 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A ND2 ASN 139 A ASN 176 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 A ND2 ASN 147 A ASN 184 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 329 n n 
C1 O1 NAG sing 330 n n 
C1 O5 NAG sing 331 n n 
C1 H1 NAG sing 332 n n 
C2 C3 NAG sing 333 n n 
C2 N2 NAG sing 334 n n 
C2 H2 NAG sing 335 n n 
C3 C4 NAG sing 336 n n 
C3 O3 NAG sing 337 n n 
C3 H3 NAG sing 338 n n 
C4 C5 NAG sing 339 n n 
C4 O4 NAG sing 340 n n 
C4 H4 NAG sing 341 n n 
C5 C6 NAG sing 342 n n 
C5 O5 NAG sing 343 n n 
C5 H5 NAG sing 344 n n 
C6 O6 NAG sing 345 n n 
C6 H61 NAG sing 346 n n 
C6 H62 NAG sing 347 n n 
C7 C8 NAG sing 348 n n 
C7 N2 NAG sing 349 n n 
C7 O7 NAG doub 350 n n 
C8 H81 NAG sing 351 n n 
C8 H82 NAG sing 352 n n 
C8 H83 NAG sing 353 n n 
N2 HN2 NAG sing 354 n n 
O1 HO1 NAG sing 355 n n 
O3 HO3 NAG sing 356 n n 
O4 HO4 NAG sing 357 n n 
O6 HO6 NAG sing 358 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8GNK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG A 1 601 601 NAG NAG . 
E 4 NAG A 1 602 602 NAG NAG . 
F 5 CL A 1 603 1 CL CL . 
G 6 NA A 1 604 1 NA NA . 
H 7 ABU A 1 605 1 ABU ABU . 
I 8 CLR A 1 606 1 CLR CLR . 
J 8 CLR A 1 607 2 CLR CLR . 
K 8 CLR A 1 608 3 CLR CLR . 
L 8 CLR A 1 609 4 CLR CLR . 
M 8 CLR A 1 610 5 CLR CLR . 
N 8 CLR A 1 611 6 CLR CLR . 
O 9 PTY A 1 612 7 PTY PTY . 
P 10 HOH A 1 701 6 HOH HOH . 
P 10 HOH A 2 702 9 HOH HOH . 
P 10 HOH A 3 703 8 HOH HOH . 
P 10 HOH A 4 704 4 HOH HOH . 
P 10 HOH A 5 705 2 HOH HOH . 
P 10 HOH A 6 706 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 177.149 149.642 117.779 1 135.57 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . D 4 177.932 149.511 119.082 1 135.14 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . D 4 177.438 150.529 120.094 1 133.6 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . D 4 177.743 151.929 119.589 1 134.16 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . D 4 177.151 152.13 118.195 1 134.22 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . D 4 178.186 152.482 117.149 1 134.19 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . D 4 178.87 147.502 120.13 1 134.5 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . D 4 178.586 146.121 120.633 1 131.68 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . D 4 177.829 148.164 119.618 1 135.43 ? N2 NAG 601 A 1 
HETATM 10 O O3 NAG . . . D 4 178.086 150.31 121.342 1 131.72 ? O3 NAG 601 A 1 
HETATM 11 O O4 NAG . . . D 4 177.192 152.895 120.477 1 134.17 ? O4 NAG 601 A 1 
HETATM 12 O O5 NAG . . . D 4 176.456 150.955 117.733 1 134.53 ? O5 NAG 601 A 1 
HETATM 13 O O6 NAG . . . D 4 177.577 152.923 115.943 1 132.92 ? O6 NAG 601 A 1 
HETATM 14 O O7 NAG . . . D 4 179.992 147.997 120.185 1 133.1 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#