data_8GNK # _model_server_result.job_id wgVutUHGroG9L2QDGl0rag _model_server_result.datetime_utc '2024-10-15 10:28:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gnk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":608}' # _entry.id 8GNK # _exptl.entry_id 8GNK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GNK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 I N N ? 8 J N N ? 8 K N N ? 8 L N N ? 8 M N N ? 8 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 164 1_555 A SG CYS 136 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 139 A ASN 176 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 147 A ASN 184 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 85 n n C1 C10 CLR sing 86 n n C1 H11 CLR sing 87 n n C1 H12 CLR sing 88 n n C2 C3 CLR sing 89 n n C2 H21 CLR sing 90 n n C2 H22 CLR sing 91 n n C3 C4 CLR sing 92 n n C3 O1 CLR sing 93 n n C3 H3 CLR sing 94 n n C4 C5 CLR sing 95 n n C4 H41 CLR sing 96 n n C4 H42 CLR sing 97 n n C5 C6 CLR doub 98 n n C5 C10 CLR sing 99 n n C6 C7 CLR sing 100 n n C6 H6 CLR sing 101 n n C7 C8 CLR sing 102 n n C7 H71 CLR sing 103 n n C7 H72 CLR sing 104 n n C8 C9 CLR sing 105 n n C8 C14 CLR sing 106 n n C8 H8 CLR sing 107 n n C9 C10 CLR sing 108 n n C9 C11 CLR sing 109 n n C9 H9 CLR sing 110 n n C10 C19 CLR sing 111 n n C11 C12 CLR sing 112 n n C11 H111 CLR sing 113 n n C11 H112 CLR sing 114 n n C12 C13 CLR sing 115 n n C12 H121 CLR sing 116 n n C12 H122 CLR sing 117 n n C13 C14 CLR sing 118 n n C13 C17 CLR sing 119 n n C13 C18 CLR sing 120 n n C14 C15 CLR sing 121 n n C14 H14 CLR sing 122 n n C15 C16 CLR sing 123 n n C15 H151 CLR sing 124 n n C15 H152 CLR sing 125 n n C16 C17 CLR sing 126 n n C16 H161 CLR sing 127 n n C16 H162 CLR sing 128 n n C17 C20 CLR sing 129 n n C17 H17 CLR sing 130 n n C18 H181 CLR sing 131 n n C18 H182 CLR sing 132 n n C18 H183 CLR sing 133 n n C19 H191 CLR sing 134 n n C19 H192 CLR sing 135 n n C19 H193 CLR sing 136 n n C20 C21 CLR sing 137 n n C20 C22 CLR sing 138 n n C20 H20 CLR sing 139 n n C21 H211 CLR sing 140 n n C21 H212 CLR sing 141 n n C21 H213 CLR sing 142 n n C22 C23 CLR sing 143 n n C22 H221 CLR sing 144 n n C22 H222 CLR sing 145 n n C23 C24 CLR sing 146 n n C23 H231 CLR sing 147 n n C23 H232 CLR sing 148 n n C24 C25 CLR sing 149 n n C24 H241 CLR sing 150 n n C24 H242 CLR sing 151 n n C25 C26 CLR sing 152 n n C25 C27 CLR sing 153 n n C25 H25 CLR sing 154 n n C26 H261 CLR sing 155 n n C26 H262 CLR sing 156 n n C26 H263 CLR sing 157 n n C27 H271 CLR sing 158 n n C27 H272 CLR sing 159 n n C27 H273 CLR sing 160 n n O1 H1 CLR sing 161 n n # _atom_sites.entry_id 8GNK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 601 601 NAG NAG . E 4 NAG A 1 602 602 NAG NAG . F 5 CL A 1 603 1 CL CL . G 6 NA A 1 604 1 NA NA . H 7 ABU A 1 605 1 ABU ABU . I 8 CLR A 1 606 1 CLR CLR . J 8 CLR A 1 607 2 CLR CLR . K 8 CLR A 1 608 3 CLR CLR . L 8 CLR A 1 609 4 CLR CLR . M 8 CLR A 1 610 5 CLR CLR . N 8 CLR A 1 611 6 CLR CLR . O 9 PTY A 1 612 7 PTY PTY . P 10 HOH A 1 701 6 HOH HOH . P 10 HOH A 2 702 9 HOH HOH . P 10 HOH A 3 703 8 HOH HOH . P 10 HOH A 4 704 4 HOH HOH . P 10 HOH A 5 705 2 HOH HOH . P 10 HOH A 6 706 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . K 8 176.401 162.451 148.099 1 77.83 ? C1 CLR 608 A 1 HETATM 2 C C2 CLR . . . K 8 177.341 162.381 146.901 1 76.48 ? C2 CLR 608 A 1 HETATM 3 C C3 CLR . . . K 8 178.168 161.112 146.936 1 78.67 ? C3 CLR 608 A 1 HETATM 4 C C4 CLR . . . K 8 177.255 159.89 147.009 1 81.29 ? C4 CLR 608 A 1 HETATM 5 C C5 CLR . . . K 8 176.258 159.977 148.135 1 81.01 ? C5 CLR 608 A 1 HETATM 6 C C6 CLR . . . K 8 175.978 158.909 148.882 1 80.12 ? C6 CLR 608 A 1 HETATM 7 C C7 CLR . . . K 8 174.853 158.822 149.864 1 80.57 ? C7 CLR 608 A 1 HETATM 8 C C8 CLR . . . K 8 173.896 160.009 149.787 1 76.2 ? C8 CLR 608 A 1 HETATM 9 C C9 CLR . . . K 8 174.702 161.297 149.569 1 76.04 ? C9 CLR 608 A 1 HETATM 10 C C10 CLR . . . K 8 175.439 161.251 148.21 1 78.76 ? C10 CLR 608 A 1 HETATM 11 C C11 CLR . . . K 8 173.854 162.558 149.767 1 78.86 ? C11 CLR 608 A 1 HETATM 12 C C12 CLR . . . K 8 173.026 162.551 151.054 1 78.11 ? C12 CLR 608 A 1 HETATM 13 C C13 CLR . . . K 8 172.113 161.326 151.103 1 78.44 ? C13 CLR 608 A 1 HETATM 14 C C14 CLR . . . K 8 173.055 160.113 151.05 1 80.34 ? C14 CLR 608 A 1 HETATM 15 C C15 CLR . . . K 8 172.184 158.927 151.44 1 80.29 ? C15 CLR 608 A 1 HETATM 16 C C16 CLR . . . K 8 171.215 159.518 152.481 1 78.68 ? C16 CLR 608 A 1 HETATM 17 C C17 CLR . . . K 8 171.348 161.066 152.427 1 79.57 ? C17 CLR 608 A 1 HETATM 18 C C18 CLR . . . K 8 171.117 161.354 149.943 1 76.04 ? C18 CLR 608 A 1 HETATM 19 C C19 CLR . . . K 8 174.452 161.259 147.035 1 77.31 ? C19 CLR 608 A 1 HETATM 20 C C20 CLR . . . K 8 170.006 161.783 152.649 1 79.73 ? C20 CLR 608 A 1 HETATM 21 C C21 CLR . . . K 8 170.175 163.189 153.222 1 82.1 ? C21 CLR 608 A 1 HETATM 22 C C22 CLR . . . K 8 169.073 160.933 153.53 1 77.56 ? C22 CLR 608 A 1 HETATM 23 C C23 CLR . . . K 8 168.347 161.665 154.655 1 80.29 ? C23 CLR 608 A 1 HETATM 24 C C24 CLR . . . K 8 166.892 161.227 154.79 1 79.13 ? C24 CLR 608 A 1 HETATM 25 C C25 CLR . . . K 8 166 162.165 155.608 1 81.1 ? C25 CLR 608 A 1 HETATM 26 C C26 CLR . . . K 8 166.378 163.621 155.354 1 80.23 ? C26 CLR 608 A 1 HETATM 27 C C27 CLR . . . K 8 164.521 161.957 155.305 1 76.2 ? C27 CLR 608 A 1 HETATM 28 O O1 CLR . . . K 8 178.989 161.086 145.787 1 75.69 ? O1 CLR 608 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #