data_8GNK # _model_server_result.job_id WJsnUKgs3UQGY8EQtMvYiQ _model_server_result.datetime_utc '2024-10-15 10:26:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gnk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":612}' # _entry.id 8GNK # _exptl.entry_id 8GNK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GNK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 164 1_555 A SG CYS 136 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 139 A ASN 176 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 147 A ASN 184 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 399 n n C1 C6 PTY sing 400 n n C1 HC11 PTY sing 401 n n C1 HC12 PTY sing 402 n n C2 C3 PTY sing 403 n n C2 N1 PTY sing 404 n n C2 HC21 PTY sing 405 n n C2 HC22 PTY sing 406 n n C3 O11 PTY sing 407 n n C3 HC31 PTY sing 408 n n C3 HC32 PTY sing 409 n n O4 C30 PTY sing 410 n n C5 C6 PTY sing 411 n n C5 O14 PTY sing 412 n n C5 HC51 PTY sing 413 n n C5 HC52 PTY sing 414 n n C6 O7 PTY sing 415 n n C6 HC6 PTY sing 416 n n O7 C8 PTY sing 417 n n C8 O10 PTY doub 418 n n C8 C11 PTY sing 419 n n C11 C12 PTY sing 420 n n C11 H111 PTY sing 421 n n C11 H112 PTY sing 422 n n C12 C13 PTY sing 423 n n C12 H121 PTY sing 424 n n C12 H122 PTY sing 425 n n C13 C14 PTY sing 426 n n C13 H131 PTY sing 427 n n C13 H132 PTY sing 428 n n C14 C15 PTY sing 429 n n C14 H141 PTY sing 430 n n C14 H142 PTY sing 431 n n C15 C16 PTY sing 432 n n C15 H151 PTY sing 433 n n C15 H152 PTY sing 434 n n C16 C17 PTY sing 435 n n C16 H161 PTY sing 436 n n C16 H162 PTY sing 437 n n C17 C18 PTY sing 438 n n C17 H171 PTY sing 439 n n C17 H172 PTY sing 440 n n C18 C19 PTY sing 441 n n C18 H181 PTY sing 442 n n C18 H182 PTY sing 443 n n C19 C20 PTY sing 444 n n C19 H191 PTY sing 445 n n C19 H192 PTY sing 446 n n C20 C21 PTY sing 447 n n C20 H201 PTY sing 448 n n C20 H202 PTY sing 449 n n C21 C22 PTY sing 450 n n C21 H211 PTY sing 451 n n C21 H212 PTY sing 452 n n C22 C23 PTY sing 453 n n C22 H221 PTY sing 454 n n C22 H222 PTY sing 455 n n C23 C24 PTY sing 456 n n C23 H231 PTY sing 457 n n C23 H232 PTY sing 458 n n C24 C25 PTY sing 459 n n C24 H241 PTY sing 460 n n C24 H242 PTY sing 461 n n C25 C26 PTY sing 462 n n C25 H251 PTY sing 463 n n C25 H252 PTY sing 464 n n C26 C27 PTY sing 465 n n C26 H261 PTY sing 466 n n C26 H262 PTY sing 467 n n C27 C28 PTY sing 468 n n C27 H271 PTY sing 469 n n C27 H272 PTY sing 470 n n C28 C29 PTY sing 471 n n C28 H281 PTY sing 472 n n C28 H282 PTY sing 473 n n C29 H291 PTY sing 474 n n C29 H292 PTY sing 475 n n C29 H293 PTY sing 476 n n C30 C31 PTY sing 477 n n C30 O30 PTY doub 478 n n C31 C32 PTY sing 479 n n C31 H311 PTY sing 480 n n C31 H312 PTY sing 481 n n C32 C33 PTY sing 482 n n C32 H321 PTY sing 483 n n C32 H322 PTY sing 484 n n C33 C34 PTY sing 485 n n C33 H331 PTY sing 486 n n C33 H332 PTY sing 487 n n C34 C35 PTY sing 488 n n C34 H341 PTY sing 489 n n C34 H342 PTY sing 490 n n C35 C36 PTY sing 491 n n C35 H351 PTY sing 492 n n C35 H352 PTY sing 493 n n C36 C37 PTY sing 494 n n C36 H361 PTY sing 495 n n C36 H362 PTY sing 496 n n C37 C38 PTY sing 497 n n C37 H371 PTY sing 498 n n C37 H372 PTY sing 499 n n C38 C39 PTY sing 500 n n C38 H381 PTY sing 501 n n C38 H382 PTY sing 502 n n C39 C40 PTY sing 503 n n C39 H391 PTY sing 504 n n C39 H392 PTY sing 505 n n C40 C41 PTY sing 506 n n C40 H401 PTY sing 507 n n C40 H402 PTY sing 508 n n C41 C42 PTY sing 509 n n C41 H411 PTY sing 510 n n C41 H412 PTY sing 511 n n C42 C43 PTY sing 512 n n C42 H421 PTY sing 513 n n C42 H422 PTY sing 514 n n C43 C44 PTY sing 515 n n C43 H431 PTY sing 516 n n C43 H432 PTY sing 517 n n C44 H441 PTY sing 518 n n C44 H442 PTY sing 519 n n C44 H443 PTY sing 520 n n P1 O11 PTY sing 521 n n P1 O12 PTY sing 522 n n P1 O13 PTY doub 523 n n P1 O14 PTY sing 524 n n O12 H12O PTY sing 525 n n N1 HN11 PTY sing 526 n n N1 HN12 PTY sing 527 n n # _atom_sites.entry_id 8GNK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 601 601 NAG NAG . E 4 NAG A 1 602 602 NAG NAG . F 5 CL A 1 603 1 CL CL . G 6 NA A 1 604 1 NA NA . H 7 ABU A 1 605 1 ABU ABU . I 8 CLR A 1 606 1 CLR CLR . J 8 CLR A 1 607 2 CLR CLR . K 8 CLR A 1 608 3 CLR CLR . L 8 CLR A 1 609 4 CLR CLR . M 8 CLR A 1 610 5 CLR CLR . N 8 CLR A 1 611 6 CLR CLR . O 9 PTY A 1 612 7 PTY PTY . P 10 HOH A 1 701 6 HOH HOH . P 10 HOH A 2 702 9 HOH HOH . P 10 HOH A 3 703 8 HOH HOH . P 10 HOH A 4 704 4 HOH HOH . P 10 HOH A 5 705 2 HOH HOH . P 10 HOH A 6 706 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . O 9 175.312 128.03 134.336 1 90.36 ? C1 PTY 612 A 1 HETATM 2 C C2 PTY . . . O 9 174.685 126.715 126.264 1 88.53 ? C2 PTY 612 A 1 HETATM 3 C C3 PTY . . . O 9 174.534 125.937 127.551 1 91.96 ? C3 PTY 612 A 1 HETATM 4 O O4 PTY . . . O 9 173.897 127.915 134.195 1 88.81 ? O4 PTY 612 A 1 HETATM 5 C C5 PTY . . . O 9 176.041 127.214 132.089 1 92.44 ? C5 PTY 612 A 1 HETATM 6 C C6 PTY . . . O 9 175.877 128.421 132.989 1 92.57 ? C6 PTY 612 A 1 HETATM 7 O O7 PTY . . . O 9 177.135 129.054 133.25 1 94.93 ? O7 PTY 612 A 1 HETATM 8 C C8 PTY . . . O 9 177.558 130.031 132.451 1 93.82 ? C8 PTY 612 A 1 HETATM 9 O O10 PTY . . . O 9 177.732 129.892 131.267 1 89.21 ? O10 PTY 612 A 1 HETATM 10 C C11 PTY . . . O 9 177.791 131.309 133.212 1 92.35 ? C11 PTY 612 A 1 HETATM 11 C C12 PTY . . . O 9 176.52 131.963 133.731 1 88.54 ? C12 PTY 612 A 1 HETATM 12 C C13 PTY . . . O 9 176.15 131.48 135.127 1 84.95 ? C13 PTY 612 A 1 HETATM 13 C C14 PTY . . . O 9 174.647 131.499 135.365 1 85.31 ? C14 PTY 612 A 1 HETATM 14 C C15 PTY . . . O 9 174.232 130.913 136.707 1 88.27 ? C15 PTY 612 A 1 HETATM 15 C C16 PTY . . . O 9 175.007 131.525 137.867 1 89.86 ? C16 PTY 612 A 1 HETATM 16 C C17 PTY . . . O 9 174.471 131.149 139.241 1 92.11 ? C17 PTY 612 A 1 HETATM 17 C C18 PTY . . . O 9 173.146 131.831 139.556 1 91.2 ? C18 PTY 612 A 1 HETATM 18 C C19 PTY . . . O 9 173.246 133.341 139.721 1 90.69 ? C19 PTY 612 A 1 HETATM 19 C C20 PTY . . . O 9 171.961 133.946 140.272 1 88.49 ? C20 PTY 612 A 1 HETATM 20 C C21 PTY . . . O 9 171.508 133.324 141.585 1 88.91 ? C21 PTY 612 A 1 HETATM 21 C C22 PTY . . . O 9 170.045 133.603 141.902 1 91.92 ? C22 PTY 612 A 1 HETATM 22 C C23 PTY . . . O 9 169.802 134.932 142.604 1 88.99 ? C23 PTY 612 A 1 HETATM 23 C C24 PTY . . . O 9 168.448 134.983 143.299 1 85.67 ? C24 PTY 612 A 1 HETATM 24 C C25 PTY . . . O 9 168.248 136.224 144.158 1 88.15 ? C25 PTY 612 A 1 HETATM 25 C C26 PTY . . . O 9 167.025 136.137 145.062 1 91.31 ? C26 PTY 612 A 1 HETATM 26 C C27 PTY . . . O 9 165.753 135.739 144.326 1 91.81 ? C27 PTY 612 A 1 HETATM 27 C C28 PTY . . . O 9 164.509 135.787 145.203 1 90.54 ? C28 PTY 612 A 1 HETATM 28 C C29 PTY . . . O 9 164.124 137.203 145.606 1 88.41 ? C29 PTY 612 A 1 HETATM 29 C C30 PTY . . . O 9 173.346 126.732 134.456 1 89.77 ? C30 PTY 612 A 1 HETATM 30 C C31 PTY . . . O 9 173.413 126.393 135.921 1 93.03 ? C31 PTY 612 A 1 HETATM 31 O O30 PTY . . . O 9 172.86 126.036 133.602 1 84.51 ? O30 PTY 612 A 1 HETATM 32 C C32 PTY . . . O 9 172.747 127.426 136.817 1 92.95 ? C32 PTY 612 A 1 HETATM 33 C C33 PTY . . . O 9 172.463 126.894 138.217 1 90.32 ? C33 PTY 612 A 1 HETATM 34 C C34 PTY . . . O 9 171.988 127.991 139.161 1 91.11 ? C34 PTY 612 A 1 HETATM 35 C C35 PTY . . . O 9 170.711 127.645 139.914 1 90.4 ? C35 PTY 612 A 1 HETATM 36 C C36 PTY . . . O 9 170.207 128.797 140.774 1 89.29 ? C36 PTY 612 A 1 HETATM 37 C C37 PTY . . . O 9 168.917 128.484 141.522 1 88.43 ? C37 PTY 612 A 1 HETATM 38 C C38 PTY . . . O 9 168.487 129.607 142.457 1 88.48 ? C38 PTY 612 A 1 HETATM 39 C C39 PTY . . . O 9 167.409 129.189 143.448 1 89.76 ? C39 PTY 612 A 1 HETATM 40 C C40 PTY . . . O 9 167.319 130.115 144.655 1 91.57 ? C40 PTY 612 A 1 HETATM 41 C C41 PTY . . . O 9 166.383 131.299 144.452 1 93.38 ? C41 PTY 612 A 1 HETATM 42 C C42 PTY . . . O 9 164.911 130.931 144.593 1 91.2 ? C42 PTY 612 A 1 HETATM 43 C C43 PTY . . . O 9 163.97 132.119 144.427 1 87.92 ? C43 PTY 612 A 1 HETATM 44 C C44 PTY . . . O 9 162.504 131.738 144.588 1 88.58 ? C44 PTY 612 A 1 HETATM 45 P P1 PTY . . . O 9 174.531 126.371 130.137 1 110.65 ? P1 PTY 612 A 1 HETATM 46 O O11 PTY . . . O 9 175.031 126.728 128.62 1 98.18 ? O11 PTY 612 A 1 HETATM 47 O O12 PTY . . . O 9 173.096 126.758 130.319 1 91.23 ? O12 PTY 612 A 1 HETATM 48 O O13 PTY . . . O 9 174.983 125 130.539 1 93.91 ? O13 PTY 612 A 1 HETATM 49 O O14 PTY . . . O 9 175.516 127.502 130.814 1 96.23 ? O14 PTY 612 A 1 HETATM 50 N N1 PTY . . . O 9 176.072 127.081 126.029 1 90.37 ? N1 PTY 612 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 50 #