data_8GOD # _model_server_result.job_id 5Ge9gt-BerA_8TapLbxVVw _model_server_result.datetime_utc '2024-12-21 16:21:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8god # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8GOD # _exptl.entry_id 8GOD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 481.564 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3~{R})-3-azanylpiperidin-1-yl]-[2-[1-[(4-fluorophenyl)methyl]indol-2-yl]-3-methyl-imidazo[1,2-a]pyridin-7-yl]methanone' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.585 _cell.angle_gamma 90 _cell.entry_id 8GOD _cell.length_a 111.456 _cell.length_b 60.879 _cell.length_c 127.097 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H28 F N5 O' _chem_comp.formula_weight 481.564 _chem_comp.id K3X _chem_comp.mon_nstd_flag . _chem_comp.name '[(3~{R})-3-azanylpiperidin-1-yl]-[2-[1-[(4-fluorophenyl)methyl]indol-2-yl]-3-methyl-imidazo[1,2-a]pyridin-7-yl]methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N16 C11 K3X sing 173 n n C11 C13 K3X sing 174 n n C11 C10 K3X sing 175 n n C13 C14 K3X sing 176 n n C10 N9 K3X sing 177 n n C14 C15 K3X sing 178 n n N9 C15 K3X sing 179 n n N9 C8 K3X sing 180 n n O17 C8 K3X doub 181 n n C8 C7 K3X sing 182 n n C18 C7 K3X sing 183 n y C18 C19 K3X doub 184 n y C7 C6 K3X doub 185 n y C19 N20 K3X sing 186 n y C6 C5 K3X sing 187 n y N20 C5 K3X sing 188 n y N20 C2 K3X sing 189 n y C5 N4 K3X doub 190 n y C1 C2 K3X sing 191 n n C2 C3 K3X doub 192 n y N4 C3 K3X sing 193 n y C3 C21 K3X sing 194 n n C29 C28 K3X doub 195 n y C29 C30 K3X sing 196 n y C28 C27 K3X sing 197 n y C21 C22 K3X doub 198 n y C21 N25 K3X sing 199 n y F33 C30 K3X sing 200 n n C30 C31 K3X doub 201 n y C27 C26 K3X sing 202 n n C27 C32 K3X doub 203 n y C22 C23 K3X sing 204 n y C26 N25 K3X sing 205 n n N25 C24 K3X sing 206 n y C31 C32 K3X sing 207 n y C23 C24 K3X doub 208 n y C23 C37 K3X sing 209 n y C24 C34 K3X sing 210 n y C37 C36 K3X doub 211 n y C34 C35 K3X doub 212 n y C36 C35 K3X sing 213 n y C36 H1 K3X sing 214 n n C35 H2 K3X sing 215 n n C37 H3 K3X sing 216 n n C28 H4 K3X sing 217 n n C32 H5 K3X sing 218 n n C34 H6 K3X sing 219 n n C29 H7 K3X sing 220 n n C31 H8 K3X sing 221 n n C22 H9 K3X sing 222 n n C6 H10 K3X sing 223 n n C18 H11 K3X sing 224 n n C19 H12 K3X sing 225 n n C14 H13 K3X sing 226 n n C14 H14 K3X sing 227 n n C13 H15 K3X sing 228 n n C13 H16 K3X sing 229 n n C15 H17 K3X sing 230 n n C15 H18 K3X sing 231 n n C10 H19 K3X sing 232 n n C10 H20 K3X sing 233 n n C11 H21 K3X sing 234 n n C1 H22 K3X sing 235 n n C1 H23 K3X sing 236 n n C1 H24 K3X sing 237 n n C26 H25 K3X sing 238 n n C26 H26 K3X sing 239 n n N16 H27 K3X sing 240 n n N16 H28 K3X sing 241 n n # _atom_sites.entry_id 8GOD _atom_sites.fract_transf_matrix[1][1] 0.008972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002335 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016426 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K3X A 1 701 702 K3X UNL . C 3 HOH A 1 801 4 HOH HOH . C 3 HOH A 2 802 1 HOH HOH . C 3 HOH A 3 803 2 HOH HOH . C 3 HOH A 4 804 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C36 K3X . . . B 2 -8.416 13.235 44.743 1 136.81 0 C36 K3X 701 A 1 HETATM 2 C C35 K3X . . . B 2 -7.058 13.397 44.876 1 136.47 0 C35 K3X 701 A 1 HETATM 3 C C37 K3X . . . B 2 -8.956 12.725 43.585 1 134.69 0 C37 K3X 701 A 1 HETATM 4 C C28 K3X . . . B 2 -5.192 14.457 40.471 1 135.52 0 C28 K3X 701 A 1 HETATM 5 C C32 K3X . . . B 2 -3.299 14.101 41.899 1 142.44 0 C32 K3X 701 A 1 HETATM 6 C C34 K3X . . . B 2 -6.213 13.055 43.853 1 134.8 0 C34 K3X 701 A 1 HETATM 7 C C29 K3X . . . B 2 -4.881 15.794 40.381 1 140.74 0 C29 K3X 701 A 1 HETATM 8 C C31 K3X . . . B 2 -2.989 15.444 41.813 1 148.33 0 C31 K3X 701 A 1 HETATM 9 C C22 K3X . . . B 2 -8.34 11.838 41.25 1 128.77 0 C22 K3X 701 A 1 HETATM 10 C C23 K3X . . . B 2 -8.123 12.364 42.547 1 131.3 0 C23 K3X 701 A 1 HETATM 11 C C27 K3X . . . B 2 -4.4 13.616 41.227 1 135.72 0 C27 K3X 701 A 1 HETATM 12 C C24 K3X . . . B 2 -6.767 12.55 42.703 1 132.03 0 C24 K3X 701 A 1 HETATM 13 C C30 K3X . . . B 2 -3.783 16.282 41.054 1 146.45 0 C30 K3X 701 A 1 HETATM 14 C C3 K3X . . . B 2 -6.798 11.295 39.272 1 119.9 0 C3 K3X 701 A 1 HETATM 15 C C21 K3X . . . B 2 -7.104 11.701 40.656 1 126.94 0 C21 K3X 701 A 1 HETATM 16 C C2 K3X . . . B 2 -7.351 11.962 38.205 1 116.27 0 C2 K3X 701 A 1 HETATM 17 C C5 K3X . . . B 2 -5.864 10.48 37.543 1 109.99 0 C5 K3X 701 A 1 HETATM 18 C C6 K3X . . . B 2 -5.109 9.807 36.572 1 107.29 0 C6 K3X 701 A 1 HETATM 19 C C18 K3X . . . B 2 -6.219 11.109 34.872 1 107.56 0 C18 K3X 701 A 1 HETATM 20 C C19 K3X . . . B 2 -6.926 11.751 35.792 1 109.86 0 C19 K3X 701 A 1 HETATM 21 C C7 K3X . . . B 2 -5.293 10.114 35.287 1 103.55 0 C7 K3X 701 A 1 HETATM 22 C C8 K3X . . . B 2 -4.484 9.412 34.258 1 97.89 0 C8 K3X 701 A 1 HETATM 23 C C14 K3X . . . B 2 -3.998 12.595 32.716 1 95.82 0 C14 K3X 701 A 1 HETATM 24 C C13 K3X . . . B 2 -3.148 12.313 31.51 1 95.09 0 C13 K3X 701 A 1 HETATM 25 C C15 K3X . . . B 2 -3.534 11.718 33.841 1 97.03 0 C15 K3X 701 A 1 HETATM 26 C C10 K3X . . . B 2 -3.011 9.962 32.321 1 92.78 0 C10 K3X 701 A 1 HETATM 27 C C11 K3X . . . B 2 -3.29 10.867 31.134 1 92.71 0 C11 K3X 701 A 1 HETATM 28 C C1 K3X . . . B 2 -8.372 13.029 38.165 1 116.88 0 C1 K3X 701 A 1 HETATM 29 C C26 K3X . . . B 2 -4.733 12.18 41.345 1 131.35 0 C26 K3X 701 A 1 HETATM 30 N N4 K3X . . . B 2 -5.871 10.375 38.852 1 115.16 0 N4 K3X 701 A 1 HETATM 31 N N25 K3X . . . B 2 -6.168 12.135 41.555 1 129.97 0 N25 K3X 701 A 1 HETATM 32 N N20 K3X . . . B 2 -6.76 11.417 37.105 1 111.58 0 N20 K3X 701 A 1 HETATM 33 N N9 K3X . . . B 2 -3.794 10.34 33.473 1 95.16 0 N9 K3X 701 A 1 HETATM 34 N N16 K3X . . . B 2 -2.366 10.61 30.039 1 91.61 0 N16 K3X 701 A 1 HETATM 35 O O17 K3X . . . B 2 -4.444 8.17 34.14 1 94 0 O17 K3X 701 A 1 HETATM 36 F F33 K3X . . . B 2 -3.484 17.591 40.964 1 148.01 0 F33 K3X 701 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #