data_8GON # _model_server_result.job_id JkXOyJ9V1xcGW-G9C8wRLA _model_server_result.datetime_utc '2024-11-09 02:22:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gon # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 8GON # _exptl.entry_id 8GON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8GON _cell.length_a 147.366 _cell.length_b 147.366 _cell.length_c 178.819 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GON _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 102 A CYS 101 1_555 A SG CYS 165 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf2 A SG CYS 204 A CYS 203 1_555 A SG CYS 260 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 D SG CYS 24 D CYS 23 1_555 D SG CYS 93 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 D SG CYS 136 D CYS 135 1_555 D SG CYS 186 D CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf6 D SG CYS 161 D CYS 160 1_555 E SG CYS 173 E CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf7 E SG CYS 24 E CYS 23 1_555 E SG CYS 93 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 E SG CYS 147 E CYS 146 1_555 E SG CYS 212 E CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 237 n n O1 HO1 PG4 sing 238 n n C1 C2 PG4 sing 239 n n C1 H11 PG4 sing 240 n n C1 H12 PG4 sing 241 n n C2 O2 PG4 sing 242 n n C2 H21 PG4 sing 243 n n C2 H22 PG4 sing 244 n n O2 C3 PG4 sing 245 n n C3 C4 PG4 sing 246 n n C3 H31 PG4 sing 247 n n C3 H32 PG4 sing 248 n n C4 O3 PG4 sing 249 n n C4 H41 PG4 sing 250 n n C4 H42 PG4 sing 251 n n O3 C5 PG4 sing 252 n n C5 C6 PG4 sing 253 n n C5 H51 PG4 sing 254 n n C5 H52 PG4 sing 255 n n C6 O4 PG4 sing 256 n n C6 H61 PG4 sing 257 n n C6 H62 PG4 sing 258 n n O4 C7 PG4 sing 259 n n C7 C8 PG4 sing 260 n n C7 H71 PG4 sing 261 n n C7 H72 PG4 sing 262 n n C8 O5 PG4 sing 263 n n C8 H81 PG4 sing 264 n n C8 H82 PG4 sing 265 n n O5 HO5 PG4 sing 266 n n # _atom_sites.entry_id 8GON _atom_sites.fract_transf_matrix[1][1] 0.006786 _atom_sites.fract_transf_matrix[1][2] 0.003918 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 PG4 A 1 301 276 PG4 PG4 . G 7 HOH A 1 401 13 HOH HOH . G 7 HOH A 2 402 117 HOH HOH . G 7 HOH A 3 403 35 HOH HOH . G 7 HOH A 4 404 112 HOH HOH . G 7 HOH A 5 405 54 HOH HOH . G 7 HOH A 6 406 113 HOH HOH . G 7 HOH A 7 407 27 HOH HOH . G 7 HOH A 8 408 3 HOH HOH . G 7 HOH A 9 409 42 HOH HOH . G 7 HOH A 10 410 67 HOH HOH . G 7 HOH A 11 411 74 HOH HOH . G 7 HOH A 12 412 8 HOH HOH . G 7 HOH A 13 413 58 HOH HOH . G 7 HOH A 14 414 31 HOH HOH . G 7 HOH A 15 415 4 HOH HOH . G 7 HOH A 16 416 85 HOH HOH . G 7 HOH A 17 417 19 HOH HOH . G 7 HOH A 18 418 14 HOH HOH . G 7 HOH A 19 419 101 HOH HOH . G 7 HOH A 20 420 50 HOH HOH . G 7 HOH A 21 421 38 HOH HOH . G 7 HOH A 22 422 43 HOH HOH . G 7 HOH A 23 423 22 HOH HOH . G 7 HOH A 24 424 37 HOH HOH . G 7 HOH A 25 425 15 HOH HOH . G 7 HOH A 26 426 106 HOH HOH . G 7 HOH A 27 427 1 HOH HOH . G 7 HOH A 28 428 99 HOH HOH . G 7 HOH A 29 429 111 HOH HOH . G 7 HOH A 30 430 20 HOH HOH . G 7 HOH A 31 431 92 HOH HOH . G 7 HOH A 32 432 71 HOH HOH . G 7 HOH A 33 433 95 HOH HOH . G 7 HOH A 34 434 70 HOH HOH . H 7 HOH B 1 101 103 HOH HOH . H 7 HOH B 2 102 36 HOH HOH . H 7 HOH B 3 103 93 HOH HOH . H 7 HOH B 4 104 11 HOH HOH . H 7 HOH B 5 105 2 HOH HOH . H 7 HOH B 6 106 6 HOH HOH . H 7 HOH B 7 107 53 HOH HOH . H 7 HOH B 8 108 59 HOH HOH . H 7 HOH B 9 109 34 HOH HOH . H 7 HOH B 10 110 98 HOH HOH . H 7 HOH B 11 111 110 HOH HOH . H 7 HOH B 12 112 33 HOH HOH . H 7 HOH B 13 113 83 HOH HOH . H 7 HOH B 14 114 97 HOH HOH . H 7 HOH B 15 115 115 HOH HOH . H 7 HOH B 16 116 100 HOH HOH . H 7 HOH B 17 117 60 HOH HOH . H 7 HOH B 18 118 87 HOH HOH . H 7 HOH B 19 119 63 HOH HOH . I 7 HOH D 1 301 17 HOH HOH . I 7 HOH D 2 302 39 HOH HOH . I 7 HOH D 3 303 56 HOH HOH . I 7 HOH D 4 304 88 HOH HOH . I 7 HOH D 5 305 73 HOH HOH . I 7 HOH D 6 306 109 HOH HOH . I 7 HOH D 7 307 89 HOH HOH . I 7 HOH D 8 308 72 HOH HOH . I 7 HOH D 9 309 28 HOH HOH . I 7 HOH D 10 310 61 HOH HOH . I 7 HOH D 11 311 78 HOH HOH . I 7 HOH D 12 312 79 HOH HOH . I 7 HOH D 13 313 116 HOH HOH . I 7 HOH D 14 314 24 HOH HOH . I 7 HOH D 15 315 66 HOH HOH . I 7 HOH D 16 316 10 HOH HOH . I 7 HOH D 17 317 108 HOH HOH . I 7 HOH D 18 318 82 HOH HOH . I 7 HOH D 19 319 76 HOH HOH . I 7 HOH D 20 320 57 HOH HOH . I 7 HOH D 21 321 45 HOH HOH . I 7 HOH D 22 322 69 HOH HOH . I 7 HOH D 23 323 107 HOH HOH . I 7 HOH D 24 324 51 HOH HOH . I 7 HOH D 25 325 91 HOH HOH . I 7 HOH D 26 326 80 HOH HOH . I 7 HOH D 27 327 64 HOH HOH . I 7 HOH D 28 328 104 HOH HOH . I 7 HOH D 29 329 68 HOH HOH . I 7 HOH D 30 330 81 HOH HOH . I 7 HOH D 31 331 75 HOH HOH . J 7 HOH E 1 301 55 HOH HOH . J 7 HOH E 2 302 25 HOH HOH . J 7 HOH E 3 303 77 HOH HOH . J 7 HOH E 4 304 49 HOH HOH . J 7 HOH E 5 305 96 HOH HOH . J 7 HOH E 6 306 16 HOH HOH . J 7 HOH E 7 307 18 HOH HOH . J 7 HOH E 8 308 9 HOH HOH . J 7 HOH E 9 309 7 HOH HOH . J 7 HOH E 10 310 47 HOH HOH . J 7 HOH E 11 311 44 HOH HOH . J 7 HOH E 12 312 41 HOH HOH . J 7 HOH E 13 313 102 HOH HOH . J 7 HOH E 14 314 5 HOH HOH . J 7 HOH E 15 315 32 HOH HOH . J 7 HOH E 16 316 40 HOH HOH . J 7 HOH E 17 317 52 HOH HOH . J 7 HOH E 18 318 12 HOH HOH . J 7 HOH E 19 319 30 HOH HOH . J 7 HOH E 20 320 65 HOH HOH . J 7 HOH E 21 321 86 HOH HOH . J 7 HOH E 22 322 23 HOH HOH . J 7 HOH E 23 323 21 HOH HOH . J 7 HOH E 24 324 84 HOH HOH . J 7 HOH E 25 325 62 HOH HOH . J 7 HOH E 26 326 105 HOH HOH . J 7 HOH E 27 327 26 HOH HOH . J 7 HOH E 28 328 29 HOH HOH . J 7 HOH E 29 329 114 HOH HOH . J 7 HOH E 30 330 94 HOH HOH . J 7 HOH E 31 331 90 HOH HOH . J 7 HOH E 32 332 48 HOH HOH . J 7 HOH E 33 333 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . F 6 -0.122 -45.583 23.789 1 62.2 ? O1 PG4 301 A 1 HETATM 2 C C1 PG4 . . . F 6 1.244 -45.574 23.436 1 55.41 ? C1 PG4 301 A 1 HETATM 3 C C2 PG4 . . . F 6 2.145 -45.649 24.678 1 69.21 ? C2 PG4 301 A 1 HETATM 4 O O2 PG4 . . . F 6 2.982 -46.783 24.619 1 70.44 ? O2 PG4 301 A 1 HETATM 5 C C3 PG4 . . . F 6 3.445 -47.301 25.852 1 60.75 ? C3 PG4 301 A 1 HETATM 6 C C4 PG4 . . . F 6 3.849 -48.793 25.745 1 58.23 ? C4 PG4 301 A 1 HETATM 7 O O3 PG4 . . . F 6 3.346 -49.365 24.557 1 64.08 ? O3 PG4 301 A 1 HETATM 8 C C5 PG4 . . . F 6 3.148 -50.762 24.505 1 54.79 ? C5 PG4 301 A 1 HETATM 9 C C6 PG4 . . . F 6 2.032 -51.087 23.482 1 49.89 ? C6 PG4 301 A 1 HETATM 10 O O4 PG4 . . . F 6 0.826 -51.399 24.15 1 55.51 ? O4 PG4 301 A 1 HETATM 11 C C7 PG4 . . . F 6 -0.379 -51.272 23.429 1 50.4 ? C7 PG4 301 A 1 HETATM 12 C C8 PG4 . . . F 6 -1.525 -50.808 24.354 1 49.21 ? C8 PG4 301 A 1 HETATM 13 O O5 PG4 . . . F 6 -1.877 -49.462 24.089 1 49.84 ? O5 PG4 301 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #