data_8GQA
#
_model_server_result.job_id            z3G4ifbKsPMvXhbfcQovKA 
_model_server_result.datetime_utc      '2025-03-12 20:07:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gqa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    8GQA 
#
_exptl.entry_id    8GQA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GQA 
_cell.length_a            128.033 
_cell.length_b            128.033 
_cell.length_c            171.026 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GQA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    'I 4 2' 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6,7,8 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
5 'crystal symmetry operation' 5_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 171.026 
6 'crystal symmetry operation' 6_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 171.026 
7 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 171.026 
8 'crystal symmetry operation' 8_556 -y,-x,-z+1 0 -1 0 -1 0 0 0 0 -1 0 0 171.026 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 13 B CYS 13 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 A OD1 ASP 413 A ASP 413 1_555 D C3 TRS . A TRS 502 16_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
metalc ? metalc1 A OE2 GLU 44 A GLU 44 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc2 A OD1 ASN 87 A ASN 87 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc3 C CA CA . A CA 501 1_555 E O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc4 C CA CA . A CA 501 1_555 E O HOH . A HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8GQA 
_atom_sites.fract_transf_matrix[1][1]    0.00781 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00781 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005847 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA A 1 501 501 CA CA . 
D 4 TRS A 1 502 601 TRS TRS . 
E 5 HOH A 1 601 16 HOH HOH . 
E 5 HOH A 2 602 90 HOH HOH . 
E 5 HOH A 3 603 131 HOH HOH . 
E 5 HOH A 4 604 42 HOH HOH . 
E 5 HOH A 5 605 142 HOH HOH . 
E 5 HOH A 6 606 24 HOH HOH . 
E 5 HOH A 7 607 7 HOH HOH . 
E 5 HOH A 8 608 148 HOH HOH . 
E 5 HOH A 9 609 213 HOH HOH . 
E 5 HOH A 10 610 29 HOH HOH . 
E 5 HOH A 11 611 114 HOH HOH . 
E 5 HOH A 12 612 61 HOH HOH . 
E 5 HOH A 13 613 100 HOH HOH . 
E 5 HOH A 14 614 78 HOH HOH . 
E 5 HOH A 15 615 44 HOH HOH . 
E 5 HOH A 16 616 98 HOH HOH . 
E 5 HOH A 17 617 186 HOH HOH . 
E 5 HOH A 18 618 23 HOH HOH . 
E 5 HOH A 19 619 65 HOH HOH . 
E 5 HOH A 20 620 52 HOH HOH . 
E 5 HOH A 21 621 72 HOH HOH . 
E 5 HOH A 22 622 1 HOH HOH . 
E 5 HOH A 23 623 166 HOH HOH . 
E 5 HOH A 24 624 56 HOH HOH . 
E 5 HOH A 25 625 17 HOH HOH . 
E 5 HOH A 26 626 155 HOH HOH . 
E 5 HOH A 27 627 145 HOH HOH . 
E 5 HOH A 28 628 109 HOH HOH . 
E 5 HOH A 29 629 21 HOH HOH . 
E 5 HOH A 30 630 136 HOH HOH . 
E 5 HOH A 31 631 55 HOH HOH . 
E 5 HOH A 32 632 121 HOH HOH . 
E 5 HOH A 33 633 40 HOH HOH . 
E 5 HOH A 34 634 22 HOH HOH . 
E 5 HOH A 35 635 208 HOH HOH . 
E 5 HOH A 36 636 118 HOH HOH . 
E 5 HOH A 37 637 48 HOH HOH . 
E 5 HOH A 38 638 13 HOH HOH . 
E 5 HOH A 39 639 27 HOH HOH . 
E 5 HOH A 40 640 102 HOH HOH . 
E 5 HOH A 41 641 46 HOH HOH . 
E 5 HOH A 42 642 132 HOH HOH . 
E 5 HOH A 43 643 35 HOH HOH . 
E 5 HOH A 44 644 9 HOH HOH . 
E 5 HOH A 45 645 110 HOH HOH . 
E 5 HOH A 46 646 6 HOH HOH . 
E 5 HOH A 47 647 26 HOH HOH . 
E 5 HOH A 48 648 85 HOH HOH . 
E 5 HOH A 49 649 12 HOH HOH . 
E 5 HOH A 50 650 34 HOH HOH . 
E 5 HOH A 51 651 79 HOH HOH . 
E 5 HOH A 52 652 66 HOH HOH . 
E 5 HOH A 53 653 80 HOH HOH . 
E 5 HOH A 54 654 50 HOH HOH . 
E 5 HOH A 55 655 37 HOH HOH . 
E 5 HOH A 56 656 93 HOH HOH . 
E 5 HOH A 57 657 88 HOH HOH . 
E 5 HOH A 58 658 170 HOH HOH . 
E 5 HOH A 59 659 43 HOH HOH . 
E 5 HOH A 60 660 31 HOH HOH . 
E 5 HOH A 61 661 11 HOH HOH . 
E 5 HOH A 62 662 5 HOH HOH . 
E 5 HOH A 63 663 75 HOH HOH . 
E 5 HOH A 64 664 67 HOH HOH . 
E 5 HOH A 65 665 8 HOH HOH . 
E 5 HOH A 66 666 28 HOH HOH . 
E 5 HOH A 67 667 4 HOH HOH . 
E 5 HOH A 68 668 20 HOH HOH . 
E 5 HOH A 69 669 203 HOH HOH . 
E 5 HOH A 70 670 60 HOH HOH . 
E 5 HOH A 71 671 116 HOH HOH . 
E 5 HOH A 72 672 15 HOH HOH . 
E 5 HOH A 73 673 32 HOH HOH . 
E 5 HOH A 74 674 74 HOH HOH . 
E 5 HOH A 75 675 76 HOH HOH . 
E 5 HOH A 76 676 57 HOH HOH . 
E 5 HOH A 77 677 123 HOH HOH . 
E 5 HOH A 78 678 99 HOH HOH . 
E 5 HOH A 79 679 82 HOH HOH . 
E 5 HOH A 80 680 2 HOH HOH . 
E 5 HOH A 81 681 163 HOH HOH . 
E 5 HOH A 82 682 84 HOH HOH . 
E 5 HOH A 83 683 36 HOH HOH . 
E 5 HOH A 84 684 103 HOH HOH . 
E 5 HOH A 85 685 30 HOH HOH . 
E 5 HOH A 86 686 53 HOH HOH . 
E 5 HOH A 87 687 3 HOH HOH . 
E 5 HOH A 88 688 83 HOH HOH . 
E 5 HOH A 89 689 94 HOH HOH . 
E 5 HOH A 90 690 135 HOH HOH . 
E 5 HOH A 91 691 126 HOH HOH . 
E 5 HOH A 92 692 49 HOH HOH . 
E 5 HOH A 93 693 51 HOH HOH . 
E 5 HOH A 94 694 59 HOH HOH . 
E 5 HOH A 95 695 112 HOH HOH . 
E 5 HOH A 96 696 62 HOH HOH . 
E 5 HOH A 97 697 25 HOH HOH . 
E 5 HOH A 98 698 38 HOH HOH . 
E 5 HOH A 99 699 14 HOH HOH . 
E 5 HOH A 100 700 120 HOH HOH . 
E 5 HOH A 101 701 10 HOH HOH . 
E 5 HOH A 102 702 68 HOH HOH . 
E 5 HOH A 103 703 115 HOH HOH . 
E 5 HOH A 104 704 124 HOH HOH . 
E 5 HOH A 105 705 113 HOH HOH . 
E 5 HOH A 106 706 63 HOH HOH . 
E 5 HOH A 107 707 105 HOH HOH . 
E 5 HOH A 108 708 33 HOH HOH . 
E 5 HOH A 109 709 140 HOH HOH . 
E 5 HOH A 110 710 45 HOH HOH . 
E 5 HOH A 111 711 19 HOH HOH . 
E 5 HOH A 112 712 101 HOH HOH . 
E 5 HOH A 113 713 96 HOH HOH . 
E 5 HOH A 114 714 125 HOH HOH . 
E 5 HOH A 115 715 130 HOH HOH . 
E 5 HOH A 116 716 77 HOH HOH . 
E 5 HOH A 117 717 127 HOH HOH . 
E 5 HOH A 118 718 64 HOH HOH . 
E 5 HOH A 119 719 172 HOH HOH . 
E 5 HOH A 120 720 210 HOH HOH . 
E 5 HOH A 121 721 81 HOH HOH . 
E 5 HOH A 122 722 70 HOH HOH . 
E 5 HOH A 123 723 137 HOH HOH . 
E 5 HOH A 124 724 69 HOH HOH . 
E 5 HOH A 125 725 39 HOH HOH . 
E 5 HOH A 126 726 144 HOH HOH . 
E 5 HOH A 127 727 41 HOH HOH . 
E 5 HOH A 128 728 107 HOH HOH . 
E 5 HOH A 129 729 95 HOH HOH . 
E 5 HOH A 130 730 92 HOH HOH . 
E 5 HOH A 131 731 154 HOH HOH . 
E 5 HOH A 132 732 54 HOH HOH . 
E 5 HOH A 133 733 122 HOH HOH . 
E 5 HOH A 134 734 71 HOH HOH . 
E 5 HOH A 135 735 87 HOH HOH . 
E 5 HOH A 136 736 106 HOH HOH . 
E 5 HOH A 137 737 97 HOH HOH . 
E 5 HOH A 138 738 91 HOH HOH . 
E 5 HOH A 139 739 181 HOH HOH . 
E 5 HOH A 140 740 47 HOH HOH . 
E 5 HOH A 141 741 182 HOH HOH . 
E 5 HOH A 142 742 171 HOH HOH . 
E 5 HOH A 143 743 206 HOH HOH . 
E 5 HOH A 144 744 195 HOH HOH . 
E 5 HOH A 145 745 117 HOH HOH . 
E 5 HOH A 146 746 205 HOH HOH . 
E 5 HOH A 147 747 164 HOH HOH . 
E 5 HOH A 148 748 162 HOH HOH . 
E 5 HOH A 149 749 73 HOH HOH . 
E 5 HOH A 150 750 198 HOH HOH . 
E 5 HOH A 151 751 108 HOH HOH . 
E 5 HOH A 152 752 196 HOH HOH . 
E 5 HOH A 153 753 86 HOH HOH . 
E 5 HOH A 154 754 189 HOH HOH . 
E 5 HOH A 155 755 119 HOH HOH . 
E 5 HOH A 156 756 165 HOH HOH . 
E 5 HOH A 157 757 143 HOH HOH . 
E 5 HOH A 158 758 207 HOH HOH . 
E 5 HOH A 159 759 173 HOH HOH . 
E 5 HOH A 160 760 147 HOH HOH . 
E 5 HOH A 161 761 194 HOH HOH . 
E 5 HOH A 162 762 128 HOH HOH . 
E 5 HOH A 163 763 202 HOH HOH . 
E 5 HOH A 164 764 180 HOH HOH . 
E 5 HOH A 165 765 201 HOH HOH . 
E 5 HOH A 166 766 89 HOH HOH . 
E 5 HOH A 167 767 161 HOH HOH . 
E 5 HOH A 168 768 151 HOH HOH . 
E 5 HOH A 169 769 149 HOH HOH . 
E 5 HOH A 170 770 174 HOH HOH . 
E 5 HOH A 171 771 176 HOH HOH . 
E 5 HOH A 172 772 197 HOH HOH . 
E 5 HOH A 173 773 184 HOH HOH . 
E 5 HOH A 174 774 141 HOH HOH . 
E 5 HOH A 175 775 212 HOH HOH . 
E 5 HOH A 176 776 190 HOH HOH . 
E 5 HOH A 177 777 18 HOH HOH . 
E 5 HOH A 178 778 192 HOH HOH . 
E 5 HOH A 179 779 175 HOH HOH . 
E 5 HOH A 180 780 188 HOH HOH . 
E 5 HOH A 181 781 133 HOH HOH . 
E 5 HOH A 182 782 158 HOH HOH . 
E 5 HOH A 183 783 185 HOH HOH . 
E 5 HOH A 184 784 58 HOH HOH . 
E 5 HOH A 185 785 160 HOH HOH . 
E 5 HOH A 186 786 200 HOH HOH . 
E 5 HOH A 187 787 153 HOH HOH . 
E 5 HOH A 188 788 187 HOH HOH . 
E 5 HOH A 189 789 129 HOH HOH . 
E 5 HOH A 190 790 178 HOH HOH . 
E 5 HOH A 191 791 168 HOH HOH . 
E 5 HOH A 192 792 191 HOH HOH . 
E 5 HOH A 193 793 177 HOH HOH . 
E 5 HOH A 194 794 199 HOH HOH . 
E 5 HOH A 195 795 209 HOH HOH . 
E 5 HOH A 196 796 156 HOH HOH . 
E 5 HOH A 197 797 193 HOH HOH . 
E 5 HOH A 198 798 157 HOH HOH . 
E 5 HOH A 199 799 204 HOH HOH . 
E 5 HOH A 200 800 159 HOH HOH . 
E 5 HOH A 201 801 167 HOH HOH . 
E 5 HOH A 202 802 111 HOH HOH . 
E 5 HOH A 203 803 179 HOH HOH . 
E 5 HOH A 204 804 183 HOH HOH . 
F 5 HOH B 1 101 211 HOH HOH . 
F 5 HOH B 2 102 214 HOH HOH . 
F 5 HOH B 3 103 146 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               23.003 
_atom_site.Cartn_y               25.484 
_atom_site.Cartn_z               68.893 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        45.35 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#