data_8GQN # _model_server_result.job_id vTtEfwjSCRVyA5SRDL4oeQ _model_server_result.datetime_utc '2024-12-22 01:07:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gqn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 8GQN # _exptl.entry_id 8GQN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.47 _cell.angle_gamma 90 _cell.entry_id 8GQN _cell.length_a 73.836 _cell.length_b 94.18 _cell.length_c 113.255 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GQN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 8GQN _atom_sites.fract_transf_matrix[1][1] 0.013544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004264 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 COA A 1 401 401 COA COA . F 2 COA B 1 401 401 COA COA . G 2 COA C 1 401 401 COA COA . H 2 COA D 1 401 401 COA COA . I 3 HOH A 1 501 74 HOH HOH . I 3 HOH A 2 502 21 HOH HOH . I 3 HOH A 3 503 48 HOH HOH . I 3 HOH A 4 504 28 HOH HOH . I 3 HOH A 5 505 62 HOH HOH . I 3 HOH A 6 506 5 HOH HOH . I 3 HOH A 7 507 42 HOH HOH . I 3 HOH A 8 508 93 HOH HOH . I 3 HOH A 9 509 25 HOH HOH . I 3 HOH A 10 510 52 HOH HOH . I 3 HOH A 11 511 30 HOH HOH . J 3 HOH B 1 501 4 HOH HOH . J 3 HOH B 2 502 54 HOH HOH . J 3 HOH B 3 503 6 HOH HOH . J 3 HOH B 4 504 26 HOH HOH . J 3 HOH B 5 505 24 HOH HOH . J 3 HOH B 6 506 50 HOH HOH . J 3 HOH B 7 507 7 HOH HOH . J 3 HOH B 8 508 56 HOH HOH . J 3 HOH B 9 509 55 HOH HOH . J 3 HOH B 10 510 2 HOH HOH . K 3 HOH C 1 501 51 HOH HOH . K 3 HOH C 2 502 49 HOH HOH . K 3 HOH C 3 503 18 HOH HOH . K 3 HOH C 4 504 47 HOH HOH . K 3 HOH C 5 505 53 HOH HOH . K 3 HOH C 6 506 3 HOH HOH . K 3 HOH C 7 507 45 HOH HOH . K 3 HOH C 8 508 35 HOH HOH . K 3 HOH C 9 509 19 HOH HOH . L 3 HOH D 1 501 36 HOH HOH . L 3 HOH D 2 502 43 HOH HOH . L 3 HOH D 3 503 22 HOH HOH . L 3 HOH D 4 504 46 HOH HOH . L 3 HOH D 5 505 57 HOH HOH . L 3 HOH D 6 506 37 HOH HOH . L 3 HOH D 7 507 73 HOH HOH . L 3 HOH D 8 508 34 HOH HOH . L 3 HOH D 9 509 29 HOH HOH . L 3 HOH D 10 510 92 HOH HOH . L 3 HOH D 11 511 41 HOH HOH . L 3 HOH D 12 512 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . E 2 29.096 -1.896 69.458 1 30.65 ? N1A COA 401 A 1 HETATM 2 C C2A COA . . . E 2 29.06 -1.662 70.778 1 28.03 ? C2A COA 401 A 1 HETATM 3 N N3A COA . . . E 2 28.042 -1.268 71.53 1 27.86 ? N3A COA 401 A 1 HETATM 4 C C4A COA . . . E 2 26.941 -1.099 70.781 1 30.36 ? C4A COA 401 A 1 HETATM 5 C C5A COA . . . E 2 26.815 -1.289 69.416 1 31.95 ? C5A COA 401 A 1 HETATM 6 C C6A COA . . . E 2 27.966 -1.718 68.722 1 31.13 ? C6A COA 401 A 1 HETATM 7 N N6A COA . . . E 2 28.006 -1.935 67.407 1 31.14 ? N6A COA 401 A 1 HETATM 8 N N7A COA . . . E 2 25.518 -0.997 69 1 31.61 ? N7A COA 401 A 1 HETATM 9 C C8A COA . . . E 2 24.894 -0.649 70.105 1 33.11 ? C8A COA 401 A 1 HETATM 10 N N9A COA . . . E 2 25.714 -0.696 71.221 1 32.51 ? N9A COA 401 A 1 HETATM 11 C C1B COA . . . E 2 25.397 -0.358 72.594 1 37.82 ? C1B COA 401 A 1 HETATM 12 C C2B COA . . . E 2 24.423 0.798 72.735 1 41.03 ? C2B COA 401 A 1 HETATM 13 O O2B COA . . . E 2 25.12 1.971 72.383 1 45.77 ? O2B COA 401 A 1 HETATM 14 C C3B COA . . . E 2 23.991 0.543 74.181 1 43.57 ? C3B COA 401 A 1 HETATM 15 O O3B COA . . . E 2 25.015 0.735 75.172 1 46.04 ? O3B COA 401 A 1 HETATM 16 P P3B COA . . . E 2 24.429 0.842 76.705 1 55.53 ? P3B COA 401 A 1 HETATM 17 O O7A COA . . . E 2 23.61 -0.41 76.974 1 52 ? O7A COA 401 A 1 HETATM 18 O O8A COA . . . E 2 23.54 2.088 76.675 1 52.71 ? O8A COA 401 A 1 HETATM 19 O O9A COA . . . E 2 25.586 0.968 77.707 1 46.91 ? O9A COA 401 A 1 HETATM 20 C C4B COA . . . E 2 23.688 -0.947 74.072 1 43.77 ? C4B COA 401 A 1 HETATM 21 O O4B COA . . . E 2 24.752 -1.442 73.217 1 42.85 ? O4B COA 401 A 1 HETATM 22 C C5B COA . . . E 2 22.362 -1.341 73.46 1 45.59 ? C5B COA 401 A 1 HETATM 23 O O5B COA . . . E 2 21.333 -0.358 73.737 1 48.11 ? O5B COA 401 A 1 HETATM 24 P P1A COA . . . E 2 20.708 0.543 72.569 1 42.77 ? P1A COA 401 A 1 HETATM 25 O O1A COA . . . E 2 21.177 0.075 71.236 1 49.41 ? O1A COA 401 A 1 HETATM 26 O O2A COA . . . E 2 20.92 1.982 72.903 1 45.76 ? O2A COA 401 A 1 HETATM 27 O O3A COA . . . E 2 19.154 0.202 72.721 1 43.29 ? O3A COA 401 A 1 HETATM 28 P P2A COA . . . E 2 18.333 -1.159 72.894 1 44.08 ? P2A COA 401 A 1 HETATM 29 O O4A COA . . . E 2 19.117 -2.06 73.796 1 44.3 ? O4A COA 401 A 1 HETATM 30 O O5A COA . . . E 2 16.89 -0.876 73.148 1 40.67 ? O5A COA 401 A 1 HETATM 31 O O6A COA . . . E 2 18.328 -1.689 71.387 1 46.05 ? O6A COA 401 A 1 HETATM 32 C CBP COA . . . E 2 17.987 -3.761 70.156 1 42.45 ? CBP COA 401 A 1 HETATM 33 C CCP COA . . . E 2 18.925 -2.978 71.073 1 45.49 ? CCP COA 401 A 1 HETATM 34 C CDP COA . . . E 2 18.747 -4.986 69.637 1 43.93 ? CDP COA 401 A 1 HETATM 35 C CEP COA . . . E 2 16.764 -4.214 70.967 1 40.71 ? CEP COA 401 A 1 HETATM 36 C CAP COA . . . E 2 17.538 -2.925 68.951 1 40.62 ? CAP COA 401 A 1 HETATM 37 O OAP COA . . . E 2 18.697 -2.469 68.268 1 41.17 ? OAP COA 401 A 1 HETATM 38 C C9P COA . . . E 2 16.65 -3.711 68.004 1 39.25 ? C9P COA 401 A 1 HETATM 39 O O9P COA . . . E 2 15.609 -4.219 68.415 1 40.17 ? O9P COA 401 A 1 HETATM 40 N N8P COA . . . E 2 17.061 -3.834 66.751 1 37.38 ? N8P COA 401 A 1 HETATM 41 C C7P COA . . . E 2 16.126 -3.996 65.653 1 37.08 ? C7P COA 401 A 1 HETATM 42 C C6P COA . . . E 2 16.676 -4.854 64.583 1 39.86 ? C6P COA 401 A 1 HETATM 43 C C5P COA . . . E 2 15.658 -4.953 63.472 1 45.99 ? C5P COA 401 A 1 HETATM 44 O O5P COA . . . E 2 14.519 -5.338 63.707 1 51.85 ? O5P COA 401 A 1 HETATM 45 N N4P COA . . . E 2 16.032 -4.614 62.237 1 49.41 ? N4P COA 401 A 1 HETATM 46 C C3P COA . . . E 2 15.346 -5.104 61.051 1 49.92 ? C3P COA 401 A 1 HETATM 47 C C2P COA . . . E 2 15.909 -6.425 60.594 1 52.9 ? C2P COA 401 A 1 HETATM 48 S S1P COA . . . E 2 15.203 -6.979 59.023 1 52.48 ? S1P COA 401 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 916 _model_server_stats.encode_time_ms 29 _model_server_stats.element_count 48 #