data_8GQN # _model_server_result.job_id IWPcacXUZYLKRZ6QHHNg7Q _model_server_result.datetime_utc '2024-12-22 01:17:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gqn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 8GQN # _exptl.entry_id 8GQN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.47 _cell.angle_gamma 90 _cell.entry_id 8GQN _cell.length_a 73.836 _cell.length_b 94.18 _cell.length_c 113.255 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GQN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 8GQN _atom_sites.fract_transf_matrix[1][1] 0.013544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004264 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 COA A 1 401 401 COA COA . F 2 COA B 1 401 401 COA COA . G 2 COA C 1 401 401 COA COA . H 2 COA D 1 401 401 COA COA . I 3 HOH A 1 501 74 HOH HOH . I 3 HOH A 2 502 21 HOH HOH . I 3 HOH A 3 503 48 HOH HOH . I 3 HOH A 4 504 28 HOH HOH . I 3 HOH A 5 505 62 HOH HOH . I 3 HOH A 6 506 5 HOH HOH . I 3 HOH A 7 507 42 HOH HOH . I 3 HOH A 8 508 93 HOH HOH . I 3 HOH A 9 509 25 HOH HOH . I 3 HOH A 10 510 52 HOH HOH . I 3 HOH A 11 511 30 HOH HOH . J 3 HOH B 1 501 4 HOH HOH . J 3 HOH B 2 502 54 HOH HOH . J 3 HOH B 3 503 6 HOH HOH . J 3 HOH B 4 504 26 HOH HOH . J 3 HOH B 5 505 24 HOH HOH . J 3 HOH B 6 506 50 HOH HOH . J 3 HOH B 7 507 7 HOH HOH . J 3 HOH B 8 508 56 HOH HOH . J 3 HOH B 9 509 55 HOH HOH . J 3 HOH B 10 510 2 HOH HOH . K 3 HOH C 1 501 51 HOH HOH . K 3 HOH C 2 502 49 HOH HOH . K 3 HOH C 3 503 18 HOH HOH . K 3 HOH C 4 504 47 HOH HOH . K 3 HOH C 5 505 53 HOH HOH . K 3 HOH C 6 506 3 HOH HOH . K 3 HOH C 7 507 45 HOH HOH . K 3 HOH C 8 508 35 HOH HOH . K 3 HOH C 9 509 19 HOH HOH . L 3 HOH D 1 501 36 HOH HOH . L 3 HOH D 2 502 43 HOH HOH . L 3 HOH D 3 503 22 HOH HOH . L 3 HOH D 4 504 46 HOH HOH . L 3 HOH D 5 505 57 HOH HOH . L 3 HOH D 6 506 37 HOH HOH . L 3 HOH D 7 507 73 HOH HOH . L 3 HOH D 8 508 34 HOH HOH . L 3 HOH D 9 509 29 HOH HOH . L 3 HOH D 10 510 92 HOH HOH . L 3 HOH D 11 511 41 HOH HOH . L 3 HOH D 12 512 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . F 2 12.295 31.262 91.016 1 42.18 ? N1A COA 401 B 1 HETATM 2 C C2A COA . . . F 2 13.032 31.257 89.899 1 44.3 ? C2A COA 401 B 1 HETATM 3 N N3A COA . . . F 2 12.794 30.663 88.729 1 45.85 ? N3A COA 401 B 1 HETATM 4 C C4A COA . . . F 2 11.641 29.982 88.765 1 44.31 ? C4A COA 401 B 1 HETATM 5 C C5A COA . . . F 2 10.777 29.882 89.835 1 45.91 ? C5A COA 401 B 1 HETATM 6 C C6A COA . . . F 2 11.13 30.572 91.021 1 44.04 ? C6A COA 401 B 1 HETATM 7 N N6A COA . . . F 2 10.406 30.576 92.138 1 43.64 ? N6A COA 401 B 1 HETATM 8 N N7A COA . . . F 2 9.69 29.082 89.484 1 42.82 ? N7A COA 401 B 1 HETATM 9 C C8A COA . . . F 2 9.922 28.712 88.245 1 41.6 ? C8A COA 401 B 1 HETATM 10 N N9A COA . . . F 2 11.087 29.251 87.75 1 42.59 ? N9A COA 401 B 1 HETATM 11 C C1B COA . . . F 2 11.677 29.039 86.44 1 41.49 ? C1B COA 401 B 1 HETATM 12 C C2B COA . . . F 2 12.1 27.595 86.219 1 41.21 ? C2B COA 401 B 1 HETATM 13 O O2B COA . . . F 2 13.267 27.298 86.951 1 37.25 ? O2B COA 401 B 1 HETATM 14 C C3B COA . . . F 2 12.258 27.6 84.693 1 42.77 ? C3B COA 401 B 1 HETATM 15 O O3B COA . . . F 2 13.541 28.095 84.308 1 46.05 ? O3B COA 401 B 1 HETATM 16 P P3B COA . . . F 2 14.252 27.247 83.117 1 51.44 ? P3B COA 401 B 1 HETATM 17 O O7A COA . . . F 2 13.773 27.872 81.8 1 47.35 ? O7A COA 401 B 1 HETATM 18 O O8A COA . . . F 2 13.865 25.772 83.229 1 48.13 ? O8A COA 401 B 1 HETATM 19 O O9A COA . . . F 2 15.744 27.46 83.376 1 47.56 ? O9A COA 401 B 1 HETATM 20 C C4B COA . . . F 2 11.159 28.559 84.233 1 39.29 ? C4B COA 401 B 1 HETATM 21 O O4B COA . . . F 2 10.731 29.275 85.422 1 40.56 ? O4B COA 401 B 1 HETATM 22 C C5B COA . . . F 2 9.975 27.881 83.598 1 38.64 ? C5B COA 401 B 1 HETATM 23 O O5B COA . . . F 2 9.167 27.255 84.631 1 37.59 ? O5B COA 401 B 1 HETATM 24 P P1A COA . . . F 2 9.043 25.662 84.817 1 34.18 ? P1A COA 401 B 1 HETATM 25 O O1A COA . . . F 2 9.38 25.309 86.234 1 38.22 ? O1A COA 401 B 1 HETATM 26 O O2A COA . . . F 2 9.739 24.969 83.706 1 37.77 ? O2A COA 401 B 1 HETATM 27 O O3A COA . . . F 2 7.486 25.452 84.57 1 33.44 ? O3A COA 401 B 1 HETATM 28 P P2A COA . . . F 2 6.679 25.576 83.201 1 38.27 ? P2A COA 401 B 1 HETATM 29 O O4A COA . . . F 2 7.013 26.878 82.545 1 37.69 ? O4A COA 401 B 1 HETATM 30 O O5A COA . . . F 2 6.861 24.32 82.423 1 37.29 ? O5A COA 401 B 1 HETATM 31 O O6A COA . . . F 2 5.168 25.669 83.741 1 36.96 ? O6A COA 401 B 1 HETATM 32 C CBP COA . . . F 2 3.366 26.884 84.898 1 38.76 ? CBP COA 401 B 1 HETATM 33 C CCP COA . . . F 2 4.677 26.984 84.122 1 38.21 ? CCP COA 401 B 1 HETATM 34 C CDP COA . . . F 2 2.817 28.309 85.03 1 38.81 ? CDP COA 401 B 1 HETATM 35 C CEP COA . . . F 2 2.362 26.039 84.099 1 37.3 ? CEP COA 401 B 1 HETATM 36 C CAP COA . . . F 2 3.617 26.251 86.292 1 41.77 ? CAP COA 401 B 1 HETATM 37 O OAP COA . . . F 2 4.612 26.92 87.098 1 38.54 ? OAP COA 401 B 1 HETATM 38 C C9P COA . . . F 2 2.398 26.095 87.181 1 43.91 ? C9P COA 401 B 1 HETATM 39 O O9P COA . . . F 2 2.608 25.747 88.337 1 45.82 ? O9P COA 401 B 1 HETATM 40 N N8P COA . . . F 2 1.182 26.363 86.704 1 47.39 ? N8P COA 401 B 1 HETATM 41 C C7P COA . . . F 2 -0.041 25.82 87.287 1 51.13 ? C7P COA 401 B 1 HETATM 42 C C6P COA . . . F 2 -0.403 26.464 88.616 1 51.76 ? C6P COA 401 B 1 HETATM 43 C C5P COA . . . F 2 -1.187 25.563 89.551 1 58.59 ? C5P COA 401 B 1 HETATM 44 O O5P COA . . . F 2 -0.621 24.715 90.242 1 70.09 ? O5P COA 401 B 1 HETATM 45 N N4P COA . . . F 2 -2.515 25.745 89.603 1 60.19 ? N4P COA 401 B 1 HETATM 46 C C3P COA . . . F 2 -3.295 25.604 90.826 1 57.86 ? C3P COA 401 B 1 HETATM 47 C C2P COA . . . F 2 -3.43 26.915 91.571 1 58.27 ? C2P COA 401 B 1 HETATM 48 S S1P COA . . . F 2 -5.113 27.283 92.134 1 61.96 ? S1P COA 401 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #