data_8GR5 # _model_server_result.job_id s-oXRQ7DiTWb_OHKXB3smA _model_server_result.datetime_utc '2025-01-10 19:52:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gr5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 8GR5 # _exptl.entry_id 8GR5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.227 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.9 _cell.angle_gamma 90 _cell.entry_id 8GR5 _cell.length_a 68.239 _cell.length_b 59.768 _cell.length_c 85.221 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GR5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 O3' _chem_comp.formula_weight 162.227 _chem_comp.id P4G _chem_comp.mon_nstd_flag . _chem_comp.name 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 P4G sing 250 n n C8 H81 P4G sing 251 n n C8 H82 P4G sing 252 n n C8 H83 P4G sing 253 n n C7 O4 P4G sing 254 n n C7 H71 P4G sing 255 n n C7 H72 P4G sing 256 n n O4 C6 P4G sing 257 n n C6 C5 P4G sing 258 n n C6 H61 P4G sing 259 n n C6 H62 P4G sing 260 n n C5 O3 P4G sing 261 n n C5 H51 P4G sing 262 n n C5 H52 P4G sing 263 n n O3 C4 P4G sing 264 n n C4 C3 P4G sing 265 n n C4 H41 P4G sing 266 n n C4 H42 P4G sing 267 n n C3 O2 P4G sing 268 n n C3 H31 P4G sing 269 n n C3 H32 P4G sing 270 n n O2 C2 P4G sing 271 n n C2 C1 P4G sing 272 n n C2 H21 P4G sing 273 n n C2 H22 P4G sing 274 n n C1 H11 P4G sing 275 n n C1 H12 P4G sing 276 n n C1 H13 P4G sing 277 n n # _atom_sites.entry_id 8GR5 _atom_sites.fract_transf_matrix[1][1] 0.014654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005595 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 2 GOL A 1 402 2 GOL GOL . D 2 GOL A 1 403 3 GOL GOL . E 2 GOL A 1 404 4 GOL GOL . F 2 GOL A 1 405 5 GOL GOL . G 3 P4G A 1 406 1 P4G P4G . H 4 HOH A 1 501 90 HOH HOH . H 4 HOH A 2 502 102 HOH HOH . H 4 HOH A 3 503 156 HOH HOH . H 4 HOH A 4 504 105 HOH HOH . H 4 HOH A 5 505 109 HOH HOH . H 4 HOH A 6 506 12 HOH HOH . H 4 HOH A 7 507 146 HOH HOH . H 4 HOH A 8 508 175 HOH HOH . H 4 HOH A 9 509 91 HOH HOH . H 4 HOH A 10 510 6 HOH HOH . H 4 HOH A 11 511 126 HOH HOH . H 4 HOH A 12 512 40 HOH HOH . H 4 HOH A 13 513 111 HOH HOH . H 4 HOH A 14 514 127 HOH HOH . H 4 HOH A 15 515 101 HOH HOH . H 4 HOH A 16 516 34 HOH HOH . H 4 HOH A 17 517 85 HOH HOH . H 4 HOH A 18 518 123 HOH HOH . H 4 HOH A 19 519 3 HOH HOH . H 4 HOH A 20 520 76 HOH HOH . H 4 HOH A 21 521 17 HOH HOH . H 4 HOH A 22 522 25 HOH HOH . H 4 HOH A 23 523 176 HOH HOH . H 4 HOH A 24 524 88 HOH HOH . H 4 HOH A 25 525 1 HOH HOH . H 4 HOH A 26 526 92 HOH HOH . H 4 HOH A 27 527 153 HOH HOH . H 4 HOH A 28 528 9 HOH HOH . H 4 HOH A 29 529 49 HOH HOH . H 4 HOH A 30 530 171 HOH HOH . H 4 HOH A 31 531 64 HOH HOH . H 4 HOH A 32 532 7 HOH HOH . H 4 HOH A 33 533 22 HOH HOH . H 4 HOH A 34 534 11 HOH HOH . H 4 HOH A 35 535 23 HOH HOH . H 4 HOH A 36 536 29 HOH HOH . H 4 HOH A 37 537 151 HOH HOH . H 4 HOH A 38 538 113 HOH HOH . H 4 HOH A 39 539 20 HOH HOH . H 4 HOH A 40 540 134 HOH HOH . H 4 HOH A 41 541 95 HOH HOH . H 4 HOH A 42 542 10 HOH HOH . H 4 HOH A 43 543 164 HOH HOH . H 4 HOH A 44 544 82 HOH HOH . H 4 HOH A 45 545 39 HOH HOH . H 4 HOH A 46 546 120 HOH HOH . H 4 HOH A 47 547 35 HOH HOH . H 4 HOH A 48 548 110 HOH HOH . H 4 HOH A 49 549 36 HOH HOH . H 4 HOH A 50 550 99 HOH HOH . H 4 HOH A 51 551 37 HOH HOH . H 4 HOH A 52 552 16 HOH HOH . H 4 HOH A 53 553 104 HOH HOH . H 4 HOH A 54 554 63 HOH HOH . H 4 HOH A 55 555 48 HOH HOH . H 4 HOH A 56 556 66 HOH HOH . H 4 HOH A 57 557 65 HOH HOH . H 4 HOH A 58 558 178 HOH HOH . H 4 HOH A 59 559 61 HOH HOH . H 4 HOH A 60 560 38 HOH HOH . H 4 HOH A 61 561 107 HOH HOH . H 4 HOH A 62 562 60 HOH HOH . H 4 HOH A 63 563 46 HOH HOH . H 4 HOH A 64 564 41 HOH HOH . H 4 HOH A 65 565 138 HOH HOH . H 4 HOH A 66 566 2 HOH HOH . H 4 HOH A 67 567 79 HOH HOH . H 4 HOH A 68 568 30 HOH HOH . H 4 HOH A 69 569 70 HOH HOH . H 4 HOH A 70 570 78 HOH HOH . H 4 HOH A 71 571 4 HOH HOH . H 4 HOH A 72 572 18 HOH HOH . H 4 HOH A 73 573 57 HOH HOH . H 4 HOH A 74 574 59 HOH HOH . H 4 HOH A 75 575 163 HOH HOH . H 4 HOH A 76 576 161 HOH HOH . H 4 HOH A 77 577 54 HOH HOH . H 4 HOH A 78 578 47 HOH HOH . H 4 HOH A 79 579 68 HOH HOH . H 4 HOH A 80 580 21 HOH HOH . H 4 HOH A 81 581 15 HOH HOH . H 4 HOH A 82 582 69 HOH HOH . H 4 HOH A 83 583 177 HOH HOH . H 4 HOH A 84 584 106 HOH HOH . H 4 HOH A 85 585 55 HOH HOH . H 4 HOH A 86 586 31 HOH HOH . H 4 HOH A 87 587 24 HOH HOH . H 4 HOH A 88 588 73 HOH HOH . H 4 HOH A 89 589 152 HOH HOH . H 4 HOH A 90 590 148 HOH HOH . H 4 HOH A 91 591 136 HOH HOH . H 4 HOH A 92 592 147 HOH HOH . H 4 HOH A 93 593 13 HOH HOH . H 4 HOH A 94 594 165 HOH HOH . H 4 HOH A 95 595 8 HOH HOH . H 4 HOH A 96 596 103 HOH HOH . H 4 HOH A 97 597 143 HOH HOH . H 4 HOH A 98 598 27 HOH HOH . H 4 HOH A 99 599 71 HOH HOH . H 4 HOH A 100 600 67 HOH HOH . H 4 HOH A 101 601 32 HOH HOH . H 4 HOH A 102 602 158 HOH HOH . H 4 HOH A 103 603 45 HOH HOH . H 4 HOH A 104 604 108 HOH HOH . H 4 HOH A 105 605 5 HOH HOH . H 4 HOH A 106 606 168 HOH HOH . H 4 HOH A 107 607 137 HOH HOH . H 4 HOH A 108 608 62 HOH HOH . H 4 HOH A 109 609 52 HOH HOH . H 4 HOH A 110 610 96 HOH HOH . H 4 HOH A 111 611 117 HOH HOH . H 4 HOH A 112 612 114 HOH HOH . H 4 HOH A 113 613 116 HOH HOH . H 4 HOH A 114 614 42 HOH HOH . H 4 HOH A 115 615 86 HOH HOH . H 4 HOH A 116 616 98 HOH HOH . H 4 HOH A 117 617 149 HOH HOH . H 4 HOH A 118 618 43 HOH HOH . H 4 HOH A 119 619 74 HOH HOH . H 4 HOH A 120 620 169 HOH HOH . H 4 HOH A 121 621 115 HOH HOH . H 4 HOH A 122 622 50 HOH HOH . H 4 HOH A 123 623 81 HOH HOH . H 4 HOH A 124 624 142 HOH HOH . H 4 HOH A 125 625 132 HOH HOH . H 4 HOH A 126 626 28 HOH HOH . H 4 HOH A 127 627 125 HOH HOH . H 4 HOH A 128 628 58 HOH HOH . H 4 HOH A 129 629 173 HOH HOH . H 4 HOH A 130 630 150 HOH HOH . H 4 HOH A 131 631 33 HOH HOH . H 4 HOH A 132 632 121 HOH HOH . H 4 HOH A 133 633 174 HOH HOH . H 4 HOH A 134 634 124 HOH HOH . H 4 HOH A 135 635 129 HOH HOH . H 4 HOH A 136 636 14 HOH HOH . H 4 HOH A 137 637 97 HOH HOH . H 4 HOH A 138 638 84 HOH HOH . H 4 HOH A 139 639 118 HOH HOH . H 4 HOH A 140 640 83 HOH HOH . H 4 HOH A 141 641 145 HOH HOH . H 4 HOH A 142 642 94 HOH HOH . H 4 HOH A 143 643 119 HOH HOH . H 4 HOH A 144 644 80 HOH HOH . H 4 HOH A 145 645 56 HOH HOH . H 4 HOH A 146 646 162 HOH HOH . H 4 HOH A 147 647 170 HOH HOH . H 4 HOH A 148 648 139 HOH HOH . H 4 HOH A 149 649 140 HOH HOH . H 4 HOH A 150 650 160 HOH HOH . H 4 HOH A 151 651 100 HOH HOH . H 4 HOH A 152 652 157 HOH HOH . H 4 HOH A 153 653 77 HOH HOH . H 4 HOH A 154 654 130 HOH HOH . H 4 HOH A 155 655 89 HOH HOH . H 4 HOH A 156 656 72 HOH HOH . H 4 HOH A 157 657 128 HOH HOH . H 4 HOH A 158 658 131 HOH HOH . H 4 HOH A 159 659 53 HOH HOH . H 4 HOH A 160 660 155 HOH HOH . H 4 HOH A 161 661 112 HOH HOH . H 4 HOH A 162 662 167 HOH HOH . H 4 HOH A 163 663 172 HOH HOH . H 4 HOH A 164 664 75 HOH HOH . H 4 HOH A 165 665 144 HOH HOH . H 4 HOH A 166 666 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 P4G . . . G 3 15.284 20.445 26.234 1 20.07 ? C8 P4G 406 A 1 HETATM 2 C C7 P4G . . . G 3 15.676 19.321 25.273 1 22.2 ? C7 P4G 406 A 1 HETATM 3 O O4 P4G . . . G 3 15.948 19.912 24.024 1 24.89 ? O4 P4G 406 A 1 HETATM 4 C C6 P4G . . . G 3 16.153 19.042 22.954 1 22.78 ? C6 P4G 406 A 1 HETATM 5 C C5 P4G . . . G 3 16.073 19.825 21.647 1 24.13 ? C5 P4G 406 A 1 HETATM 6 O O3 P4G . . . G 3 16.872 20.98 21.726 1 29.66 ? O3 P4G 406 A 1 HETATM 7 C C4 P4G . . . G 3 17.197 21.547 20.48 1 22.92 ? C4 P4G 406 A 1 HETATM 8 C C3 P4G . . . G 3 17.284 23.071 20.611 1 26.49 ? C3 P4G 406 A 1 HETATM 9 O O2 P4G . . . G 3 17.991 23.454 21.758 1 27.14 ? O2 P4G 406 A 1 HETATM 10 C C2 P4G . . . G 3 17.297 24.234 22.701 1 30.48 ? C2 P4G 406 A 1 HETATM 11 C C1 P4G . . . G 3 18.096 25.503 23.017 1 27.77 ? C1 P4G 406 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #