data_8GR8
#
_model_server_result.job_id            F6uVqEBazvytJgM8S1OZoQ 
_model_server_result.datetime_utc      '2024-11-28 16:24:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gr8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":504}' 
#
_entry.id    8GR8 
#
_exptl.entry_id    8GR8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GR8 
_cell.length_a            108.715 
_cell.length_b            108.715 
_cell.length_c            86.952 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GR8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    'P 4w' 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 K N N 
? 3 L N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 149 n n 
C1 C2 GOL sing 150 n n 
C1 H11 GOL sing 151 n n 
C1 H12 GOL sing 152 n n 
O1 HO1 GOL sing 153 n n 
C2 O2 GOL sing 154 n n 
C2 C3 GOL sing 155 n n 
C2 H2 GOL sing 156 n n 
O2 HO2 GOL sing 157 n n 
C3 O3 GOL sing 158 n n 
C3 H31 GOL sing 159 n n 
C3 H32 GOL sing 160 n n 
O3 HO3 GOL sing 161 n n 
#
_atom_sites.entry_id                     8GR8 
_atom_sites.fract_transf_matrix[1][1]    0.009198 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009198 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011501 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 501 1 CL CL . 
D 2 CL A 1 502 2 CL CL . 
E 3 GOL A 1 503 1 GOL GOL . 
F 3 GOL A 1 504 3 GOL GOL . 
G 3 GOL A 1 505 4 GOL GOL . 
H 3 GOL A 1 506 5 GOL GOL . 
I 4 EPE A 1 507 1 EPE EPE . 
J 5 PEG A 1 508 1 PEG PEG . 
K 3 GOL B 1 501 2 GOL GOL . 
L 3 GOL B 1 502 6 GOL GOL . 
M 5 PEG B 1 503 2 PEG PEG . 
N 6 HOH A 1 601 156 HOH HOH . 
N 6 HOH A 2 602 145 HOH HOH . 
N 6 HOH A 3 603 124 HOH HOH . 
N 6 HOH A 4 604 16 HOH HOH . 
N 6 HOH A 5 605 72 HOH HOH . 
N 6 HOH A 6 606 68 HOH HOH . 
N 6 HOH A 7 607 86 HOH HOH . 
N 6 HOH A 8 608 151 HOH HOH . 
N 6 HOH A 9 609 32 HOH HOH . 
N 6 HOH A 10 610 1 HOH HOH . 
N 6 HOH A 11 611 165 HOH HOH . 
N 6 HOH A 12 612 67 HOH HOH . 
N 6 HOH A 13 613 12 HOH HOH . 
N 6 HOH A 14 614 148 HOH HOH . 
N 6 HOH A 15 615 70 HOH HOH . 
N 6 HOH A 16 616 17 HOH HOH . 
N 6 HOH A 17 617 11 HOH HOH . 
N 6 HOH A 18 618 81 HOH HOH . 
N 6 HOH A 19 619 150 HOH HOH . 
N 6 HOH A 20 620 48 HOH HOH . 
N 6 HOH A 21 621 4 HOH HOH . 
N 6 HOH A 22 622 79 HOH HOH . 
N 6 HOH A 23 623 65 HOH HOH . 
N 6 HOH A 24 624 58 HOH HOH . 
N 6 HOH A 25 625 7 HOH HOH . 
N 6 HOH A 26 626 22 HOH HOH . 
N 6 HOH A 27 627 21 HOH HOH . 
N 6 HOH A 28 628 3 HOH HOH . 
N 6 HOH A 29 629 87 HOH HOH . 
N 6 HOH A 30 630 84 HOH HOH . 
N 6 HOH A 31 631 56 HOH HOH . 
N 6 HOH A 32 632 50 HOH HOH . 
N 6 HOH A 33 633 35 HOH HOH . 
N 6 HOH A 34 634 119 HOH HOH . 
N 6 HOH A 35 635 6 HOH HOH . 
N 6 HOH A 36 636 88 HOH HOH . 
N 6 HOH A 37 637 99 HOH HOH . 
N 6 HOH A 38 638 129 HOH HOH . 
N 6 HOH A 39 639 89 HOH HOH . 
N 6 HOH A 40 640 18 HOH HOH . 
N 6 HOH A 41 641 167 HOH HOH . 
N 6 HOH A 42 642 24 HOH HOH . 
N 6 HOH A 43 643 78 HOH HOH . 
N 6 HOH A 44 644 110 HOH HOH . 
N 6 HOH A 45 645 59 HOH HOH . 
N 6 HOH A 46 646 38 HOH HOH . 
N 6 HOH A 47 647 126 HOH HOH . 
N 6 HOH A 48 648 71 HOH HOH . 
N 6 HOH A 49 649 118 HOH HOH . 
N 6 HOH A 50 650 92 HOH HOH . 
N 6 HOH A 51 651 133 HOH HOH . 
N 6 HOH A 52 652 85 HOH HOH . 
N 6 HOH A 53 653 116 HOH HOH . 
N 6 HOH A 54 654 20 HOH HOH . 
N 6 HOH A 55 655 44 HOH HOH . 
N 6 HOH A 56 656 57 HOH HOH . 
N 6 HOH A 57 657 40 HOH HOH . 
N 6 HOH A 58 658 31 HOH HOH . 
N 6 HOH A 59 659 134 HOH HOH . 
N 6 HOH A 60 660 163 HOH HOH . 
N 6 HOH A 61 661 47 HOH HOH . 
N 6 HOH A 62 662 153 HOH HOH . 
N 6 HOH A 63 663 66 HOH HOH . 
N 6 HOH A 64 664 100 HOH HOH . 
N 6 HOH A 65 665 54 HOH HOH . 
N 6 HOH A 66 666 164 HOH HOH . 
N 6 HOH A 67 667 80 HOH HOH . 
N 6 HOH A 68 668 39 HOH HOH . 
N 6 HOH A 69 669 74 HOH HOH . 
N 6 HOH A 70 670 28 HOH HOH . 
N 6 HOH A 71 671 128 HOH HOH . 
N 6 HOH A 72 672 43 HOH HOH . 
N 6 HOH A 73 673 9 HOH HOH . 
N 6 HOH A 74 674 62 HOH HOH . 
N 6 HOH A 75 675 51 HOH HOH . 
N 6 HOH A 76 676 127 HOH HOH . 
N 6 HOH A 77 677 144 HOH HOH . 
N 6 HOH A 78 678 2 HOH HOH . 
N 6 HOH A 79 679 162 HOH HOH . 
N 6 HOH A 80 680 83 HOH HOH . 
N 6 HOH A 81 681 166 HOH HOH . 
N 6 HOH A 82 682 93 HOH HOH . 
N 6 HOH A 83 683 107 HOH HOH . 
N 6 HOH A 84 684 49 HOH HOH . 
N 6 HOH A 85 685 82 HOH HOH . 
N 6 HOH A 86 686 147 HOH HOH . 
N 6 HOH A 87 687 117 HOH HOH . 
N 6 HOH A 88 688 77 HOH HOH . 
N 6 HOH A 89 689 157 HOH HOH . 
N 6 HOH A 90 690 76 HOH HOH . 
N 6 HOH A 91 691 159 HOH HOH . 
N 6 HOH A 92 692 161 HOH HOH . 
N 6 HOH A 93 693 135 HOH HOH . 
N 6 HOH A 94 694 61 HOH HOH . 
O 6 HOH B 1 601 14 HOH HOH . 
O 6 HOH B 2 602 136 HOH HOH . 
O 6 HOH B 3 603 139 HOH HOH . 
O 6 HOH B 4 604 33 HOH HOH . 
O 6 HOH B 5 605 103 HOH HOH . 
O 6 HOH B 6 606 123 HOH HOH . 
O 6 HOH B 7 607 109 HOH HOH . 
O 6 HOH B 8 608 42 HOH HOH . 
O 6 HOH B 9 609 105 HOH HOH . 
O 6 HOH B 10 610 36 HOH HOH . 
O 6 HOH B 11 611 104 HOH HOH . 
O 6 HOH B 12 612 52 HOH HOH . 
O 6 HOH B 13 613 5 HOH HOH . 
O 6 HOH B 14 614 75 HOH HOH . 
O 6 HOH B 15 615 55 HOH HOH . 
O 6 HOH B 16 616 122 HOH HOH . 
O 6 HOH B 17 617 96 HOH HOH . 
O 6 HOH B 18 618 29 HOH HOH . 
O 6 HOH B 19 619 15 HOH HOH . 
O 6 HOH B 20 620 90 HOH HOH . 
O 6 HOH B 21 621 125 HOH HOH . 
O 6 HOH B 22 622 112 HOH HOH . 
O 6 HOH B 23 623 101 HOH HOH . 
O 6 HOH B 24 624 142 HOH HOH . 
O 6 HOH B 25 625 53 HOH HOH . 
O 6 HOH B 26 626 91 HOH HOH . 
O 6 HOH B 27 627 30 HOH HOH . 
O 6 HOH B 28 628 168 HOH HOH . 
O 6 HOH B 29 629 10 HOH HOH . 
O 6 HOH B 30 630 23 HOH HOH . 
O 6 HOH B 31 631 63 HOH HOH . 
O 6 HOH B 32 632 26 HOH HOH . 
O 6 HOH B 33 633 8 HOH HOH . 
O 6 HOH B 34 634 97 HOH HOH . 
O 6 HOH B 35 635 138 HOH HOH . 
O 6 HOH B 36 636 113 HOH HOH . 
O 6 HOH B 37 637 25 HOH HOH . 
O 6 HOH B 38 638 27 HOH HOH . 
O 6 HOH B 39 639 41 HOH HOH . 
O 6 HOH B 40 640 140 HOH HOH . 
O 6 HOH B 41 641 73 HOH HOH . 
O 6 HOH B 42 642 37 HOH HOH . 
O 6 HOH B 43 643 60 HOH HOH . 
O 6 HOH B 44 644 114 HOH HOH . 
O 6 HOH B 45 645 64 HOH HOH . 
O 6 HOH B 46 646 132 HOH HOH . 
O 6 HOH B 47 647 155 HOH HOH . 
O 6 HOH B 48 648 69 HOH HOH . 
O 6 HOH B 49 649 108 HOH HOH . 
O 6 HOH B 50 650 45 HOH HOH . 
O 6 HOH B 51 651 130 HOH HOH . 
O 6 HOH B 52 652 95 HOH HOH . 
O 6 HOH B 53 653 154 HOH HOH . 
O 6 HOH B 54 654 137 HOH HOH . 
O 6 HOH B 55 655 98 HOH HOH . 
O 6 HOH B 56 656 13 HOH HOH . 
O 6 HOH B 57 657 19 HOH HOH . 
O 6 HOH B 58 658 143 HOH HOH . 
O 6 HOH B 59 659 94 HOH HOH . 
O 6 HOH B 60 660 158 HOH HOH . 
O 6 HOH B 61 661 141 HOH HOH . 
O 6 HOH B 62 662 121 HOH HOH . 
O 6 HOH B 63 663 115 HOH HOH . 
O 6 HOH B 64 664 120 HOH HOH . 
O 6 HOH B 65 665 34 HOH HOH . 
O 6 HOH B 66 666 146 HOH HOH . 
O 6 HOH B 67 667 111 HOH HOH . 
O 6 HOH B 68 668 102 HOH HOH . 
O 6 HOH B 69 669 46 HOH HOH . 
O 6 HOH B 70 670 149 HOH HOH . 
O 6 HOH B 71 671 106 HOH HOH . 
O 6 HOH B 72 672 160 HOH HOH . 
O 6 HOH B 73 673 152 HOH HOH . 
O 6 HOH B 74 674 131 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 28.812 52.783 40.244 1 56.46 ? C1 GOL 504 A 1 
HETATM 2 O O1 GOL . . . F 3 27.655 53.52 39.975 1 60.82 ? O1 GOL 504 A 1 
HETATM 3 C C2 GOL . . . F 3 29.637 53.548 41.317 1 57.07 ? C2 GOL 504 A 1 
HETATM 4 O O2 GOL . . . F 3 30.161 52.693 42.279 1 58.57 ? O2 GOL 504 A 1 
HETATM 5 C C3 GOL . . . F 3 28.678 54.608 41.918 1 54.81 ? C3 GOL 504 A 1 
HETATM 6 O O3 GOL . . . F 3 29.469 55.487 42.659 1 58.59 ? O3 GOL 504 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#