data_8GR8 # _model_server_result.job_id cBgcd3d11rh3QYD1MpCNug _model_server_result.datetime_utc '2024-11-05 22:59:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gr8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":507}' # _entry.id 8GR8 # _exptl.entry_id 8GR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GR8 _cell.length_a 108.715 _cell.length_b 108.715 _cell.length_c 86.952 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall 'P 4w' _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 70 n n N1 C6 EPE sing 71 n n N1 C9 EPE sing 72 n n C2 C3 EPE sing 73 n n C2 H21 EPE sing 74 n n C2 H22 EPE sing 75 n n C3 N4 EPE sing 76 n n C3 H31 EPE sing 77 n n C3 H32 EPE sing 78 n n N4 C5 EPE sing 79 n n N4 C7 EPE sing 80 n n C5 C6 EPE sing 81 n n C5 H51 EPE sing 82 n n C5 H52 EPE sing 83 n n C6 H61 EPE sing 84 n n C6 H62 EPE sing 85 n n C7 C8 EPE sing 86 n n C7 H71 EPE sing 87 n n C7 H72 EPE sing 88 n n C8 O8 EPE sing 89 n n C8 H81 EPE sing 90 n n C8 H82 EPE sing 91 n n O8 HO8 EPE sing 92 n n C9 C10 EPE sing 93 n n C9 H91 EPE sing 94 n n C9 H92 EPE sing 95 n n C10 S EPE sing 96 n n C10 H101 EPE sing 97 n n C10 H102 EPE sing 98 n n S O1S EPE doub 99 n n S O2S EPE doub 100 n n S O3S EPE sing 101 n n O3S HOS3 EPE sing 102 n n # _atom_sites.entry_id 8GR8 _atom_sites.fract_transf_matrix[1][1] 0.009198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 501 1 CL CL . D 2 CL A 1 502 2 CL CL . E 3 GOL A 1 503 1 GOL GOL . F 3 GOL A 1 504 3 GOL GOL . G 3 GOL A 1 505 4 GOL GOL . H 3 GOL A 1 506 5 GOL GOL . I 4 EPE A 1 507 1 EPE EPE . J 5 PEG A 1 508 1 PEG PEG . K 3 GOL B 1 501 2 GOL GOL . L 3 GOL B 1 502 6 GOL GOL . M 5 PEG B 1 503 2 PEG PEG . N 6 HOH A 1 601 156 HOH HOH . N 6 HOH A 2 602 145 HOH HOH . N 6 HOH A 3 603 124 HOH HOH . N 6 HOH A 4 604 16 HOH HOH . N 6 HOH A 5 605 72 HOH HOH . N 6 HOH A 6 606 68 HOH HOH . N 6 HOH A 7 607 86 HOH HOH . N 6 HOH A 8 608 151 HOH HOH . N 6 HOH A 9 609 32 HOH HOH . N 6 HOH A 10 610 1 HOH HOH . N 6 HOH A 11 611 165 HOH HOH . N 6 HOH A 12 612 67 HOH HOH . N 6 HOH A 13 613 12 HOH HOH . N 6 HOH A 14 614 148 HOH HOH . N 6 HOH A 15 615 70 HOH HOH . N 6 HOH A 16 616 17 HOH HOH . N 6 HOH A 17 617 11 HOH HOH . N 6 HOH A 18 618 81 HOH HOH . N 6 HOH A 19 619 150 HOH HOH . N 6 HOH A 20 620 48 HOH HOH . N 6 HOH A 21 621 4 HOH HOH . N 6 HOH A 22 622 79 HOH HOH . N 6 HOH A 23 623 65 HOH HOH . N 6 HOH A 24 624 58 HOH HOH . N 6 HOH A 25 625 7 HOH HOH . N 6 HOH A 26 626 22 HOH HOH . N 6 HOH A 27 627 21 HOH HOH . N 6 HOH A 28 628 3 HOH HOH . N 6 HOH A 29 629 87 HOH HOH . N 6 HOH A 30 630 84 HOH HOH . N 6 HOH A 31 631 56 HOH HOH . N 6 HOH A 32 632 50 HOH HOH . N 6 HOH A 33 633 35 HOH HOH . N 6 HOH A 34 634 119 HOH HOH . N 6 HOH A 35 635 6 HOH HOH . N 6 HOH A 36 636 88 HOH HOH . N 6 HOH A 37 637 99 HOH HOH . N 6 HOH A 38 638 129 HOH HOH . N 6 HOH A 39 639 89 HOH HOH . N 6 HOH A 40 640 18 HOH HOH . N 6 HOH A 41 641 167 HOH HOH . N 6 HOH A 42 642 24 HOH HOH . N 6 HOH A 43 643 78 HOH HOH . N 6 HOH A 44 644 110 HOH HOH . N 6 HOH A 45 645 59 HOH HOH . N 6 HOH A 46 646 38 HOH HOH . N 6 HOH A 47 647 126 HOH HOH . N 6 HOH A 48 648 71 HOH HOH . N 6 HOH A 49 649 118 HOH HOH . N 6 HOH A 50 650 92 HOH HOH . N 6 HOH A 51 651 133 HOH HOH . N 6 HOH A 52 652 85 HOH HOH . N 6 HOH A 53 653 116 HOH HOH . N 6 HOH A 54 654 20 HOH HOH . N 6 HOH A 55 655 44 HOH HOH . N 6 HOH A 56 656 57 HOH HOH . N 6 HOH A 57 657 40 HOH HOH . N 6 HOH A 58 658 31 HOH HOH . N 6 HOH A 59 659 134 HOH HOH . N 6 HOH A 60 660 163 HOH HOH . N 6 HOH A 61 661 47 HOH HOH . N 6 HOH A 62 662 153 HOH HOH . N 6 HOH A 63 663 66 HOH HOH . N 6 HOH A 64 664 100 HOH HOH . N 6 HOH A 65 665 54 HOH HOH . N 6 HOH A 66 666 164 HOH HOH . N 6 HOH A 67 667 80 HOH HOH . N 6 HOH A 68 668 39 HOH HOH . N 6 HOH A 69 669 74 HOH HOH . N 6 HOH A 70 670 28 HOH HOH . N 6 HOH A 71 671 128 HOH HOH . N 6 HOH A 72 672 43 HOH HOH . N 6 HOH A 73 673 9 HOH HOH . N 6 HOH A 74 674 62 HOH HOH . N 6 HOH A 75 675 51 HOH HOH . N 6 HOH A 76 676 127 HOH HOH . N 6 HOH A 77 677 144 HOH HOH . N 6 HOH A 78 678 2 HOH HOH . N 6 HOH A 79 679 162 HOH HOH . N 6 HOH A 80 680 83 HOH HOH . N 6 HOH A 81 681 166 HOH HOH . N 6 HOH A 82 682 93 HOH HOH . N 6 HOH A 83 683 107 HOH HOH . N 6 HOH A 84 684 49 HOH HOH . N 6 HOH A 85 685 82 HOH HOH . N 6 HOH A 86 686 147 HOH HOH . N 6 HOH A 87 687 117 HOH HOH . N 6 HOH A 88 688 77 HOH HOH . N 6 HOH A 89 689 157 HOH HOH . N 6 HOH A 90 690 76 HOH HOH . N 6 HOH A 91 691 159 HOH HOH . N 6 HOH A 92 692 161 HOH HOH . N 6 HOH A 93 693 135 HOH HOH . N 6 HOH A 94 694 61 HOH HOH . O 6 HOH B 1 601 14 HOH HOH . O 6 HOH B 2 602 136 HOH HOH . O 6 HOH B 3 603 139 HOH HOH . O 6 HOH B 4 604 33 HOH HOH . O 6 HOH B 5 605 103 HOH HOH . O 6 HOH B 6 606 123 HOH HOH . O 6 HOH B 7 607 109 HOH HOH . O 6 HOH B 8 608 42 HOH HOH . O 6 HOH B 9 609 105 HOH HOH . O 6 HOH B 10 610 36 HOH HOH . O 6 HOH B 11 611 104 HOH HOH . O 6 HOH B 12 612 52 HOH HOH . O 6 HOH B 13 613 5 HOH HOH . O 6 HOH B 14 614 75 HOH HOH . O 6 HOH B 15 615 55 HOH HOH . O 6 HOH B 16 616 122 HOH HOH . O 6 HOH B 17 617 96 HOH HOH . O 6 HOH B 18 618 29 HOH HOH . O 6 HOH B 19 619 15 HOH HOH . O 6 HOH B 20 620 90 HOH HOH . O 6 HOH B 21 621 125 HOH HOH . O 6 HOH B 22 622 112 HOH HOH . O 6 HOH B 23 623 101 HOH HOH . O 6 HOH B 24 624 142 HOH HOH . O 6 HOH B 25 625 53 HOH HOH . O 6 HOH B 26 626 91 HOH HOH . O 6 HOH B 27 627 30 HOH HOH . O 6 HOH B 28 628 168 HOH HOH . O 6 HOH B 29 629 10 HOH HOH . O 6 HOH B 30 630 23 HOH HOH . O 6 HOH B 31 631 63 HOH HOH . O 6 HOH B 32 632 26 HOH HOH . O 6 HOH B 33 633 8 HOH HOH . O 6 HOH B 34 634 97 HOH HOH . O 6 HOH B 35 635 138 HOH HOH . O 6 HOH B 36 636 113 HOH HOH . O 6 HOH B 37 637 25 HOH HOH . O 6 HOH B 38 638 27 HOH HOH . O 6 HOH B 39 639 41 HOH HOH . O 6 HOH B 40 640 140 HOH HOH . O 6 HOH B 41 641 73 HOH HOH . O 6 HOH B 42 642 37 HOH HOH . O 6 HOH B 43 643 60 HOH HOH . O 6 HOH B 44 644 114 HOH HOH . O 6 HOH B 45 645 64 HOH HOH . O 6 HOH B 46 646 132 HOH HOH . O 6 HOH B 47 647 155 HOH HOH . O 6 HOH B 48 648 69 HOH HOH . O 6 HOH B 49 649 108 HOH HOH . O 6 HOH B 50 650 45 HOH HOH . O 6 HOH B 51 651 130 HOH HOH . O 6 HOH B 52 652 95 HOH HOH . O 6 HOH B 53 653 154 HOH HOH . O 6 HOH B 54 654 137 HOH HOH . O 6 HOH B 55 655 98 HOH HOH . O 6 HOH B 56 656 13 HOH HOH . O 6 HOH B 57 657 19 HOH HOH . O 6 HOH B 58 658 143 HOH HOH . O 6 HOH B 59 659 94 HOH HOH . O 6 HOH B 60 660 158 HOH HOH . O 6 HOH B 61 661 141 HOH HOH . O 6 HOH B 62 662 121 HOH HOH . O 6 HOH B 63 663 115 HOH HOH . O 6 HOH B 64 664 120 HOH HOH . O 6 HOH B 65 665 34 HOH HOH . O 6 HOH B 66 666 146 HOH HOH . O 6 HOH B 67 667 111 HOH HOH . O 6 HOH B 68 668 102 HOH HOH . O 6 HOH B 69 669 46 HOH HOH . O 6 HOH B 70 670 149 HOH HOH . O 6 HOH B 71 671 106 HOH HOH . O 6 HOH B 72 672 160 HOH HOH . O 6 HOH B 73 673 152 HOH HOH . O 6 HOH B 74 674 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . I 4 -6.242 42.589 61.173 1 76.16 ? N1 EPE 507 A 1 HETATM 2 C C2 EPE . . . I 4 -7.162 42.79 60.046 1 77.16 ? C2 EPE 507 A 1 HETATM 3 C C3 EPE . . . I 4 -6.616 43.906 59.163 1 81.46 ? C3 EPE 507 A 1 HETATM 4 N N4 EPE . . . I 4 -6.258 45.096 59.914 1 86.71 ? N4 EPE 507 A 1 HETATM 5 C C5 EPE . . . I 4 -5.664 44.949 61.232 1 76.41 ? C5 EPE 507 A 1 HETATM 6 C C6 EPE . . . I 4 -6.255 43.787 62.023 1 77.72 ? C6 EPE 507 A 1 HETATM 7 C C7 EPE . . . I 4 -5.979 46.304 59.158 1 78.23 ? C7 EPE 507 A 1 HETATM 8 C C8 EPE . . . I 4 -5.747 47.523 60.043 1 75.32 ? C8 EPE 507 A 1 HETATM 9 O O8 EPE . . . I 4 -5.775 48.686 59.247 1 70.8 ? O8 EPE 507 A 1 HETATM 10 C C9 EPE . . . I 4 -6.627 41.398 61.944 1 67.86 ? C9 EPE 507 A 1 HETATM 11 C C10 EPE . . . I 4 -5.969 40.179 61.307 1 64.78 ? C10 EPE 507 A 1 HETATM 12 S S EPE . . . I 4 -5.89 38.741 62.406 1 83.55 ? S EPE 507 A 1 HETATM 13 O O1S EPE . . . I 4 -4.527 38.593 62.911 1 54.16 ? O1S EPE 507 A 1 HETATM 14 O O2S EPE . . . I 4 -6.264 37.541 61.663 1 64.61 ? O2S EPE 507 A 1 HETATM 15 O O3S EPE . . . I 4 -6.813 38.927 63.523 1 81.38 ? O3S EPE 507 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #