data_8GRD # _model_server_result.job_id egF4Sk4InjHOzM4QWdvQ4g _model_server_result.datetime_utc '2024-11-05 04:57:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8grd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8GRD # _exptl.entry_id 8GRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GRD _cell.length_a 165.897 _cell.length_b 165.897 _cell.length_c 129.583 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 230 A ASP 230 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc2 A OD1 ASP 234 A ASP 234 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc3 C MG MG . A MG 401 1_555 B OD2 ASP 217 B ASP 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8GRD _atom_sites.fract_transf_matrix[1][1] 0.006028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 401 1 MG MG . D 4 ADP B 1 401 1 ADP ADP . E 5 HOH A 1 501 23 HOH HOH . E 5 HOH A 2 502 49 HOH HOH . E 5 HOH A 3 503 40 HOH HOH . E 5 HOH A 4 504 19 HOH HOH . E 5 HOH A 5 505 43 HOH HOH . E 5 HOH A 6 506 29 HOH HOH . E 5 HOH A 7 507 52 HOH HOH . E 5 HOH A 8 508 11 HOH HOH . E 5 HOH A 9 509 22 HOH HOH . E 5 HOH A 10 510 36 HOH HOH . E 5 HOH A 11 511 28 HOH HOH . E 5 HOH A 12 512 27 HOH HOH . E 5 HOH A 13 513 3 HOH HOH . E 5 HOH A 14 514 26 HOH HOH . E 5 HOH A 15 515 6 HOH HOH . E 5 HOH A 16 516 45 HOH HOH . E 5 HOH A 17 517 10 HOH HOH . E 5 HOH A 18 518 12 HOH HOH . E 5 HOH A 19 519 41 HOH HOH . E 5 HOH A 20 520 21 HOH HOH . E 5 HOH A 21 521 13 HOH HOH . E 5 HOH A 22 522 18 HOH HOH . E 5 HOH A 23 523 31 HOH HOH . E 5 HOH A 24 524 35 HOH HOH . E 5 HOH A 25 525 33 HOH HOH . E 5 HOH A 26 526 20 HOH HOH . E 5 HOH A 27 527 38 HOH HOH . E 5 HOH A 28 528 32 HOH HOH . E 5 HOH A 29 529 50 HOH HOH . F 5 HOH B 1 501 5 HOH HOH . F 5 HOH B 2 502 25 HOH HOH . F 5 HOH B 3 503 46 HOH HOH . F 5 HOH B 4 504 9 HOH HOH . F 5 HOH B 5 505 47 HOH HOH . F 5 HOH B 6 506 44 HOH HOH . F 5 HOH B 7 507 17 HOH HOH . F 5 HOH B 8 508 37 HOH HOH . F 5 HOH B 9 509 15 HOH HOH . F 5 HOH B 10 510 34 HOH HOH . F 5 HOH B 11 511 14 HOH HOH . F 5 HOH B 12 512 24 HOH HOH . F 5 HOH B 13 513 16 HOH HOH . F 5 HOH B 14 514 2 HOH HOH . F 5 HOH B 15 515 42 HOH HOH . F 5 HOH B 16 516 4 HOH HOH . F 5 HOH B 17 517 30 HOH HOH . F 5 HOH B 18 518 8 HOH HOH . F 5 HOH B 19 519 51 HOH HOH . F 5 HOH B 20 520 39 HOH HOH . F 5 HOH B 21 521 7 HOH HOH . F 5 HOH B 22 522 1 HOH HOH . F 5 HOH B 23 523 48 HOH HOH . F 5 HOH B 24 524 54 HOH HOH . F 5 HOH B 25 525 53 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 48.368 _atom_site.Cartn_y -0.77 _atom_site.Cartn_z 22.651 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #