data_8GRE # _model_server_result.job_id uYstVgMs3JiTakd_NOWcTw _model_server_result.datetime_utc '2024-11-06 01:40:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gre # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8GRE # _exptl.entry_id 8GRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GRE _cell.length_a 77.589 _cell.length_b 150.942 _cell.length_c 160.286 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8GRE _atom_sites.fract_transf_matrix[1][1] 0.012888 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006239 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GOL A 1 501 1 GOL GOL . F 4 GOL A 1 502 3 GOL GOL . G 4 GOL C 1 401 2 GOL GOL . H 4 GOL C 1 402 4 GOL GOL . I 5 HOH A 1 601 185 HOH HOH . I 5 HOH A 2 602 198 HOH HOH . I 5 HOH A 3 603 156 HOH HOH . I 5 HOH A 4 604 197 HOH HOH . I 5 HOH A 5 605 1 HOH HOH . I 5 HOH A 6 606 102 HOH HOH . I 5 HOH A 7 607 213 HOH HOH . I 5 HOH A 8 608 4 HOH HOH . I 5 HOH A 9 609 225 HOH HOH . I 5 HOH A 10 610 39 HOH HOH . I 5 HOH A 11 611 8 HOH HOH . I 5 HOH A 12 612 11 HOH HOH . I 5 HOH A 13 613 43 HOH HOH . I 5 HOH A 14 614 106 HOH HOH . I 5 HOH A 15 615 133 HOH HOH . I 5 HOH A 16 616 211 HOH HOH . I 5 HOH A 17 617 5 HOH HOH . I 5 HOH A 18 618 15 HOH HOH . I 5 HOH A 19 619 188 HOH HOH . I 5 HOH A 20 620 2 HOH HOH . I 5 HOH A 21 621 16 HOH HOH . I 5 HOH A 22 622 14 HOH HOH . I 5 HOH A 23 623 90 HOH HOH . I 5 HOH A 24 624 182 HOH HOH . I 5 HOH A 25 625 200 HOH HOH . I 5 HOH A 26 626 22 HOH HOH . I 5 HOH A 27 627 99 HOH HOH . I 5 HOH A 28 628 199 HOH HOH . I 5 HOH A 29 629 113 HOH HOH . I 5 HOH A 30 630 195 HOH HOH . I 5 HOH A 31 631 157 HOH HOH . I 5 HOH A 32 632 101 HOH HOH . I 5 HOH A 33 633 164 HOH HOH . I 5 HOH A 34 634 103 HOH HOH . I 5 HOH A 35 635 9 HOH HOH . I 5 HOH A 36 636 10 HOH HOH . I 5 HOH A 37 637 187 HOH HOH . I 5 HOH A 38 638 37 HOH HOH . I 5 HOH A 39 639 162 HOH HOH . I 5 HOH A 40 640 100 HOH HOH . I 5 HOH A 41 641 114 HOH HOH . I 5 HOH A 42 642 88 HOH HOH . I 5 HOH A 43 643 38 HOH HOH . I 5 HOH A 44 644 131 HOH HOH . I 5 HOH A 45 645 89 HOH HOH . I 5 HOH A 46 646 186 HOH HOH . I 5 HOH A 47 647 174 HOH HOH . I 5 HOH A 48 648 134 HOH HOH . I 5 HOH A 49 649 6 HOH HOH . I 5 HOH A 50 650 13 HOH HOH . I 5 HOH A 51 651 160 HOH HOH . I 5 HOH A 52 652 107 HOH HOH . I 5 HOH A 53 653 132 HOH HOH . I 5 HOH A 54 654 184 HOH HOH . I 5 HOH A 55 655 40 HOH HOH . I 5 HOH A 56 656 3 HOH HOH . I 5 HOH A 57 657 7 HOH HOH . I 5 HOH A 58 658 91 HOH HOH . I 5 HOH A 59 659 105 HOH HOH . I 5 HOH A 60 660 135 HOH HOH . I 5 HOH A 61 661 161 HOH HOH . I 5 HOH A 62 662 163 HOH HOH . I 5 HOH A 63 663 239 HOH HOH . I 5 HOH A 64 664 23 HOH HOH . I 5 HOH A 65 665 41 HOH HOH . I 5 HOH A 66 666 12 HOH HOH . I 5 HOH A 67 667 196 HOH HOH . I 5 HOH A 68 668 210 HOH HOH . I 5 HOH A 69 669 243 HOH HOH . I 5 HOH A 70 670 42 HOH HOH . I 5 HOH A 71 671 201 HOH HOH . I 5 HOH A 72 672 189 HOH HOH . I 5 HOH A 73 673 173 HOH HOH . J 5 HOH B 1 501 115 HOH HOH . J 5 HOH B 2 502 183 HOH HOH . J 5 HOH B 3 503 51 HOH HOH . J 5 HOH B 4 504 158 HOH HOH . J 5 HOH B 5 505 18 HOH HOH . J 5 HOH B 6 506 171 HOH HOH . J 5 HOH B 7 507 25 HOH HOH . J 5 HOH B 8 508 240 HOH HOH . J 5 HOH B 9 509 30 HOH HOH . J 5 HOH B 10 510 52 HOH HOH . J 5 HOH B 11 511 140 HOH HOH . J 5 HOH B 12 512 108 HOH HOH . J 5 HOH B 13 513 31 HOH HOH . J 5 HOH B 14 514 242 HOH HOH . J 5 HOH B 15 515 194 HOH HOH . J 5 HOH B 16 516 44 HOH HOH . J 5 HOH B 17 517 21 HOH HOH . J 5 HOH B 18 518 47 HOH HOH . J 5 HOH B 19 519 221 HOH HOH . J 5 HOH B 20 520 223 HOH HOH . J 5 HOH B 21 521 138 HOH HOH . J 5 HOH B 22 522 172 HOH HOH . J 5 HOH B 23 523 168 HOH HOH . J 5 HOH B 24 524 29 HOH HOH . J 5 HOH B 25 525 27 HOH HOH . J 5 HOH B 26 526 192 HOH HOH . J 5 HOH B 27 527 48 HOH HOH . J 5 HOH B 28 528 241 HOH HOH . J 5 HOH B 29 529 17 HOH HOH . J 5 HOH B 30 530 46 HOH HOH . J 5 HOH B 31 531 50 HOH HOH . J 5 HOH B 32 532 24 HOH HOH . J 5 HOH B 33 533 28 HOH HOH . J 5 HOH B 34 534 170 HOH HOH . J 5 HOH B 35 535 215 HOH HOH . J 5 HOH B 36 536 19 HOH HOH . J 5 HOH B 37 537 49 HOH HOH . J 5 HOH B 38 538 34 HOH HOH . J 5 HOH B 39 539 139 HOH HOH . J 5 HOH B 40 540 45 HOH HOH . J 5 HOH B 41 541 226 HOH HOH . J 5 HOH B 42 542 227 HOH HOH . J 5 HOH B 43 543 216 HOH HOH . J 5 HOH B 44 544 235 HOH HOH . J 5 HOH B 45 545 111 HOH HOH . J 5 HOH B 46 546 222 HOH HOH . J 5 HOH B 47 547 204 HOH HOH . J 5 HOH B 48 548 75 HOH HOH . J 5 HOH B 49 549 32 HOH HOH . J 5 HOH B 50 550 26 HOH HOH . J 5 HOH B 51 551 137 HOH HOH . J 5 HOH B 52 552 112 HOH HOH . J 5 HOH B 53 553 33 HOH HOH . J 5 HOH B 54 554 70 HOH HOH . J 5 HOH B 55 555 110 HOH HOH . J 5 HOH B 56 556 238 HOH HOH . J 5 HOH B 57 557 98 HOH HOH . J 5 HOH B 58 558 218 HOH HOH . J 5 HOH B 59 559 36 HOH HOH . J 5 HOH B 60 560 152 HOH HOH . J 5 HOH B 61 561 35 HOH HOH . J 5 HOH B 62 562 109 HOH HOH . J 5 HOH B 63 563 217 HOH HOH . J 5 HOH B 64 564 142 HOH HOH . J 5 HOH B 65 565 169 HOH HOH . J 5 HOH B 66 566 20 HOH HOH . J 5 HOH B 67 567 136 HOH HOH . J 5 HOH B 68 568 153 HOH HOH . K 5 HOH C 1 501 125 HOH HOH . K 5 HOH C 2 502 175 HOH HOH . K 5 HOH C 3 503 94 HOH HOH . K 5 HOH C 4 504 53 HOH HOH . K 5 HOH C 5 505 128 HOH HOH . K 5 HOH C 6 506 236 HOH HOH . K 5 HOH C 7 507 177 HOH HOH . K 5 HOH C 8 508 79 HOH HOH . K 5 HOH C 9 509 104 HOH HOH . K 5 HOH C 10 510 233 HOH HOH . K 5 HOH C 11 511 84 HOH HOH . K 5 HOH C 12 512 85 HOH HOH . K 5 HOH C 13 513 76 HOH HOH . K 5 HOH C 14 514 67 HOH HOH . K 5 HOH C 15 515 127 HOH HOH . K 5 HOH C 16 516 146 HOH HOH . K 5 HOH C 17 517 64 HOH HOH . K 5 HOH C 18 518 57 HOH HOH . K 5 HOH C 19 519 234 HOH HOH . K 5 HOH C 20 520 97 HOH HOH . K 5 HOH C 21 521 96 HOH HOH . K 5 HOH C 22 522 145 HOH HOH . K 5 HOH C 23 523 148 HOH HOH . K 5 HOH C 24 524 144 HOH HOH . K 5 HOH C 25 525 117 HOH HOH . K 5 HOH C 26 526 82 HOH HOH . K 5 HOH C 27 527 229 HOH HOH . K 5 HOH C 28 528 54 HOH HOH . K 5 HOH C 29 529 61 HOH HOH . K 5 HOH C 30 530 65 HOH HOH . K 5 HOH C 31 531 62 HOH HOH . K 5 HOH C 32 532 73 HOH HOH . K 5 HOH C 33 533 119 HOH HOH . K 5 HOH C 34 534 179 HOH HOH . K 5 HOH C 35 535 190 HOH HOH . K 5 HOH C 36 536 203 HOH HOH . K 5 HOH C 37 537 56 HOH HOH . K 5 HOH C 38 538 193 HOH HOH . K 5 HOH C 39 539 180 HOH HOH . K 5 HOH C 40 540 68 HOH HOH . K 5 HOH C 41 541 126 HOH HOH . K 5 HOH C 42 542 123 HOH HOH . K 5 HOH C 43 543 244 HOH HOH . K 5 HOH C 44 544 207 HOH HOH . K 5 HOH C 45 545 212 HOH HOH . K 5 HOH C 46 546 202 HOH HOH . K 5 HOH C 47 547 141 HOH HOH . K 5 HOH C 48 548 228 HOH HOH . K 5 HOH C 49 549 176 HOH HOH . K 5 HOH C 50 550 74 HOH HOH . K 5 HOH C 51 551 224 HOH HOH . K 5 HOH C 52 552 116 HOH HOH . K 5 HOH C 53 553 60 HOH HOH . K 5 HOH C 54 554 206 HOH HOH . K 5 HOH C 55 555 232 HOH HOH . K 5 HOH C 56 556 63 HOH HOH . K 5 HOH C 57 557 58 HOH HOH . K 5 HOH C 58 558 55 HOH HOH . K 5 HOH C 59 559 95 HOH HOH . K 5 HOH C 60 560 78 HOH HOH . K 5 HOH C 61 561 59 HOH HOH . K 5 HOH C 62 562 214 HOH HOH . K 5 HOH C 63 563 120 HOH HOH . K 5 HOH C 64 564 191 HOH HOH . K 5 HOH C 65 565 237 HOH HOH . K 5 HOH C 66 566 71 HOH HOH . K 5 HOH C 67 567 147 HOH HOH . K 5 HOH C 68 568 159 HOH HOH . K 5 HOH C 69 569 66 HOH HOH . K 5 HOH C 70 570 167 HOH HOH . K 5 HOH C 71 571 205 HOH HOH . K 5 HOH C 72 572 220 HOH HOH . K 5 HOH C 73 573 230 HOH HOH . K 5 HOH C 74 574 231 HOH HOH . K 5 HOH C 75 575 154 HOH HOH . K 5 HOH C 76 576 155 HOH HOH . K 5 HOH C 77 577 166 HOH HOH . K 5 HOH C 78 578 81 HOH HOH . K 5 HOH C 79 579 121 HOH HOH . K 5 HOH C 80 580 86 HOH HOH . K 5 HOH C 81 581 118 HOH HOH . K 5 HOH C 82 582 93 HOH HOH . K 5 HOH C 83 583 124 HOH HOH . K 5 HOH C 84 584 219 HOH HOH . K 5 HOH C 85 585 83 HOH HOH . K 5 HOH C 86 586 181 HOH HOH . K 5 HOH C 87 587 92 HOH HOH . K 5 HOH C 88 588 72 HOH HOH . K 5 HOH C 89 589 165 HOH HOH . K 5 HOH C 90 590 178 HOH HOH . K 5 HOH C 91 591 149 HOH HOH . K 5 HOH C 92 592 208 HOH HOH . K 5 HOH C 93 593 69 HOH HOH . L 5 HOH D 1 201 130 HOH HOH . L 5 HOH D 2 202 80 HOH HOH . L 5 HOH D 3 203 87 HOH HOH . L 5 HOH D 4 204 129 HOH HOH . L 5 HOH D 5 205 143 HOH HOH . L 5 HOH D 6 206 122 HOH HOH . L 5 HOH D 7 207 77 HOH HOH . L 5 HOH D 8 208 150 HOH HOH . L 5 HOH D 9 209 209 HOH HOH . L 5 HOH D 10 210 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -5.879 6.166 -6.982 1 50.08 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . E 4 -5.654 7.055 -8.032 1 44.46 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . E 4 -6.991 5.211 -7.45 1 36.42 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . E 4 -7.805 4.822 -6.4 1 50.17 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . E 4 -6.24 4.017 -8.087 1 51.09 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . E 4 -5.322 3.559 -7.138 1 46.36 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #