data_8GRF # _model_server_result.job_id V-YR25T1tJyKvReu75SQzA _model_server_result.datetime_utc '2024-11-24 23:07:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8grf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":402}' # _entry.id 8GRF # _exptl.entry_id 8GRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GRF _cell.length_a 77.407 _cell.length_b 150.976 _cell.length_c 160.384 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8GRF _atom_sites.fract_transf_matrix[1][1] 0.012919 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 EDO A 1 501 2 EDO EDO . F 4 EDO A 1 502 4 EDO EDO . G 4 EDO A 1 503 7 EDO EDO . H 4 EDO B 1 501 3 EDO EDO . I 4 EDO B 1 502 6 EDO EDO . J 4 EDO B 1 503 10 EDO EDO . K 4 EDO C 1 401 1 EDO EDO . L 4 EDO C 1 402 5 EDO EDO . M 4 EDO C 1 403 8 EDO EDO . N 4 EDO C 1 404 9 EDO EDO . O 5 HOH A 1 601 70 HOH HOH . O 5 HOH A 2 602 69 HOH HOH . O 5 HOH A 3 603 77 HOH HOH . O 5 HOH A 4 604 66 HOH HOH . O 5 HOH A 5 605 57 HOH HOH . O 5 HOH A 6 606 2 HOH HOH . O 5 HOH A 7 607 154 HOH HOH . O 5 HOH A 8 608 1 HOH HOH . O 5 HOH A 9 609 65 HOH HOH . O 5 HOH A 10 610 10 HOH HOH . O 5 HOH A 11 611 50 HOH HOH . O 5 HOH A 12 612 21 HOH HOH . O 5 HOH A 13 613 63 HOH HOH . O 5 HOH A 14 614 6 HOH HOH . O 5 HOH A 15 615 155 HOH HOH . O 5 HOH A 16 616 138 HOH HOH . O 5 HOH A 17 617 9 HOH HOH . O 5 HOH A 18 618 134 HOH HOH . O 5 HOH A 19 619 72 HOH HOH . O 5 HOH A 20 620 102 HOH HOH . O 5 HOH A 21 621 8 HOH HOH . O 5 HOH A 22 622 79 HOH HOH . O 5 HOH A 23 623 80 HOH HOH . O 5 HOH A 24 624 123 HOH HOH . O 5 HOH A 25 625 7 HOH HOH . O 5 HOH A 26 626 3 HOH HOH . O 5 HOH A 27 627 73 HOH HOH . O 5 HOH A 28 628 58 HOH HOH . O 5 HOH A 29 629 48 HOH HOH . O 5 HOH A 30 630 36 HOH HOH . O 5 HOH A 31 631 4 HOH HOH . O 5 HOH A 32 632 68 HOH HOH . O 5 HOH A 33 633 127 HOH HOH . O 5 HOH A 34 634 76 HOH HOH . O 5 HOH A 35 635 18 HOH HOH . O 5 HOH A 36 636 47 HOH HOH . O 5 HOH A 37 637 121 HOH HOH . O 5 HOH A 38 638 59 HOH HOH . O 5 HOH A 39 639 142 HOH HOH . O 5 HOH A 40 640 71 HOH HOH . O 5 HOH A 41 641 20 HOH HOH . O 5 HOH A 42 642 67 HOH HOH . O 5 HOH A 43 643 75 HOH HOH . O 5 HOH A 44 644 126 HOH HOH . O 5 HOH A 45 645 122 HOH HOH . O 5 HOH A 46 646 147 HOH HOH . O 5 HOH A 47 647 19 HOH HOH . O 5 HOH A 48 648 74 HOH HOH . P 5 HOH B 1 601 22 HOH HOH . P 5 HOH B 2 602 101 HOH HOH . P 5 HOH B 3 603 143 HOH HOH . P 5 HOH B 4 604 60 HOH HOH . P 5 HOH B 5 605 137 HOH HOH . P 5 HOH B 6 606 100 HOH HOH . P 5 HOH B 7 607 82 HOH HOH . P 5 HOH B 8 608 13 HOH HOH . P 5 HOH B 9 609 89 HOH HOH . P 5 HOH B 10 610 144 HOH HOH . P 5 HOH B 11 611 23 HOH HOH . P 5 HOH B 12 612 84 HOH HOH . P 5 HOH B 13 613 152 HOH HOH . P 5 HOH B 14 614 12 HOH HOH . P 5 HOH B 15 615 91 HOH HOH . P 5 HOH B 16 616 99 HOH HOH . P 5 HOH B 17 617 98 HOH HOH . P 5 HOH B 18 618 85 HOH HOH . P 5 HOH B 19 619 25 HOH HOH . P 5 HOH B 20 620 15 HOH HOH . P 5 HOH B 21 621 88 HOH HOH . P 5 HOH B 22 622 83 HOH HOH . P 5 HOH B 23 623 81 HOH HOH . P 5 HOH B 24 624 11 HOH HOH . P 5 HOH B 25 625 16 HOH HOH . P 5 HOH B 26 626 24 HOH HOH . P 5 HOH B 27 627 97 HOH HOH . P 5 HOH B 28 628 86 HOH HOH . P 5 HOH B 29 629 94 HOH HOH . P 5 HOH B 30 630 120 HOH HOH . P 5 HOH B 31 631 17 HOH HOH . P 5 HOH B 32 632 129 HOH HOH . P 5 HOH B 33 633 90 HOH HOH . P 5 HOH B 34 634 95 HOH HOH . P 5 HOH B 35 635 14 HOH HOH . P 5 HOH B 36 636 96 HOH HOH . P 5 HOH B 37 637 136 HOH HOH . P 5 HOH B 38 638 93 HOH HOH . P 5 HOH B 39 639 92 HOH HOH . P 5 HOH B 40 640 156 HOH HOH . P 5 HOH B 41 641 37 HOH HOH . P 5 HOH B 42 642 87 HOH HOH . Q 5 HOH C 1 501 103 HOH HOH . Q 5 HOH C 2 502 26 HOH HOH . Q 5 HOH C 3 503 56 HOH HOH . Q 5 HOH C 4 504 117 HOH HOH . Q 5 HOH C 5 505 106 HOH HOH . Q 5 HOH C 6 506 145 HOH HOH . Q 5 HOH C 7 507 33 HOH HOH . Q 5 HOH C 8 508 128 HOH HOH . Q 5 HOH C 9 509 34 HOH HOH . Q 5 HOH C 10 510 28 HOH HOH . Q 5 HOH C 11 511 30 HOH HOH . Q 5 HOH C 12 512 130 HOH HOH . Q 5 HOH C 13 513 104 HOH HOH . Q 5 HOH C 14 514 62 HOH HOH . Q 5 HOH C 15 515 41 HOH HOH . Q 5 HOH C 16 516 54 HOH HOH . Q 5 HOH C 17 517 53 HOH HOH . Q 5 HOH C 18 518 49 HOH HOH . Q 5 HOH C 19 519 29 HOH HOH . Q 5 HOH C 20 520 133 HOH HOH . Q 5 HOH C 21 521 105 HOH HOH . Q 5 HOH C 22 522 109 HOH HOH . Q 5 HOH C 23 523 131 HOH HOH . Q 5 HOH C 24 524 61 HOH HOH . Q 5 HOH C 25 525 114 HOH HOH . Q 5 HOH C 26 526 43 HOH HOH . Q 5 HOH C 27 527 44 HOH HOH . Q 5 HOH C 28 528 31 HOH HOH . Q 5 HOH C 29 529 110 HOH HOH . Q 5 HOH C 30 530 32 HOH HOH . Q 5 HOH C 31 531 40 HOH HOH . Q 5 HOH C 32 532 64 HOH HOH . Q 5 HOH C 33 533 107 HOH HOH . Q 5 HOH C 34 534 27 HOH HOH . Q 5 HOH C 35 535 125 HOH HOH . Q 5 HOH C 36 536 108 HOH HOH . Q 5 HOH C 37 537 124 HOH HOH . Q 5 HOH C 38 538 45 HOH HOH . Q 5 HOH C 39 539 149 HOH HOH . Q 5 HOH C 40 540 52 HOH HOH . Q 5 HOH C 41 541 51 HOH HOH . Q 5 HOH C 42 542 158 HOH HOH . Q 5 HOH C 43 543 141 HOH HOH . Q 5 HOH C 44 544 38 HOH HOH . Q 5 HOH C 45 545 55 HOH HOH . Q 5 HOH C 46 546 78 HOH HOH . Q 5 HOH C 47 547 5 HOH HOH . Q 5 HOH C 48 548 151 HOH HOH . Q 5 HOH C 49 549 153 HOH HOH . Q 5 HOH C 50 550 115 HOH HOH . Q 5 HOH C 51 551 118 HOH HOH . Q 5 HOH C 52 552 111 HOH HOH . Q 5 HOH C 53 553 148 HOH HOH . Q 5 HOH C 54 554 119 HOH HOH . Q 5 HOH C 55 555 35 HOH HOH . Q 5 HOH C 56 556 132 HOH HOH . R 5 HOH D 1 201 113 HOH HOH . R 5 HOH D 2 202 157 HOH HOH . R 5 HOH D 3 203 46 HOH HOH . R 5 HOH D 4 204 150 HOH HOH . R 5 HOH D 5 205 112 HOH HOH . R 5 HOH D 6 206 42 HOH HOH . R 5 HOH D 7 207 116 HOH HOH . R 5 HOH D 8 208 146 HOH HOH . R 5 HOH D 9 209 139 HOH HOH . R 5 HOH D 10 210 135 HOH HOH . R 5 HOH D 11 211 39 HOH HOH . R 5 HOH D 12 212 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 4 -12.048 -23.641 -2.888 1 43.88 ? C1 EDO 402 C 1 HETATM 2 O O1 EDO . . . L 4 -11.785 -23.03 -4.156 1 57.73 ? O1 EDO 402 C 1 HETATM 3 C C2 EDO . . . L 4 -11.382 -22.83 -1.785 1 41.56 ? C2 EDO 402 C 1 HETATM 4 O O2 EDO . . . L 4 -11.934 -21.51 -1.769 1 44.98 ? O2 EDO 402 C 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #