data_8GRU # _model_server_result.job_id YvxMSRLFt6_g9Z6TGxRpCw _model_server_result.datetime_utc '2024-11-05 05:48:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gru # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":403}' # _entry.id 8GRU # _exptl.entry_id 8GRU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ISOCITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GRU _cell.length_a 134.043 _cell.length_b 163.833 _cell.length_c 163.129 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GRU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C N GLY 264 C GLY 264 1_555 I O1A NAD . C NAD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? metalc ? metalc1 A OD1 ASP 230 A ASP 230 1_555 F CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc2 F CA CA . A CA 402 1_555 G O7 ICT . A ICT 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc3 F CA CA . A CA 402 1_555 B OD2 ASP 217 B ASP 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc4 C OD1 ASP 230 C ASP 230 1_555 J CA CA . C CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc5 J CA CA . C CA 402 1_555 K O7 ICT . C ICT 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc6 J CA CA . C CA 402 1_555 D OD2 ASP 217 D ASP 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id ICT _chem_comp.mon_nstd_flag . _chem_comp.name 'ISOCITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 ICT doub 150 n n C1 O2 ICT sing 151 n n C1 C2 ICT sing 152 n n O2 HO2 ICT sing 153 n n C2 O7 ICT sing 154 n n C2 C3 ICT sing 155 n n C2 H2 ICT sing 156 n n O7 HO7 ICT sing 157 n n C3 C4 ICT sing 158 n n C3 C6 ICT sing 159 n n C3 H3 ICT sing 160 n n C4 C5 ICT sing 161 n n C4 H41 ICT sing 162 n n C4 H42 ICT sing 163 n n C5 O3 ICT doub 164 n n C5 O4 ICT sing 165 n n O4 HO4 ICT sing 166 n n C6 O5 ICT doub 167 n n C6 O6 ICT sing 168 n n O6 HO6 ICT sing 169 n n # _atom_sites.entry_id 8GRU _atom_sites.fract_transf_matrix[1][1] 0.00746 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAD A 1 401 2 NAD NAD . F 4 CA A 1 402 1 CA CA . G 5 ICT A 1 403 2 ICT ICT . H 3 NAD B 1 401 1 NAD NAD . I 3 NAD C 1 401 4 NAD NAD . J 4 CA C 1 402 3 CA CA . K 5 ICT C 1 403 3 ICT ICT . L 3 NAD D 1 401 3 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ICT . . . K 5 -22.351 -0.543 -31.448 1 60.53 ? C1 ICT 403 C 1 HETATM 2 O O1 ICT . . . K 5 -22.088 0.676 -31.42 1 64.22 ? O1 ICT 403 C 1 HETATM 3 O O2 ICT . . . K 5 -23.279 -1.1 -30.829 1 54.15 ? O2 ICT 403 C 1 HETATM 4 C C2 ICT . . . K 5 -21.455 -1.433 -32.316 1 57.42 ? C2 ICT 403 C 1 HETATM 5 O O7 ICT . . . K 5 -22.074 -1.741 -33.55 1 52.58 ? O7 ICT 403 C 1 HETATM 6 C C3 ICT . . . K 5 -21.077 -2.736 -31.586 1 56.34 ? C3 ICT 403 C 1 HETATM 7 C C4 ICT . . . K 5 -19.947 -3.469 -32.313 1 57.39 ? C4 ICT 403 C 1 HETATM 8 C C5 ICT . . . K 5 -19.18 -4.429 -31.419 1 56.71 ? C5 ICT 403 C 1 HETATM 9 O O3 ICT . . . K 5 -18.382 -5.222 -31.957 1 61.68 ? O3 ICT 403 C 1 HETATM 10 O O4 ICT . . . K 5 -19.386 -4.379 -30.191 1 53.07 ? O4 ICT 403 C 1 HETATM 11 C C6 ICT . . . K 5 -22.294 -3.648 -31.395 1 63.96 ? C6 ICT 403 C 1 HETATM 12 O O5 ICT . . . K 5 -23.021 -3.871 -32.384 1 60.36 ? O5 ICT 403 C 1 HETATM 13 O O6 ICT . . . K 5 -22.498 -4.124 -30.261 1 69.88 ? O6 ICT 403 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #