data_8GRZ # _model_server_result.job_id Nk5R3uoiVzpmAvvrNb0NJw _model_server_result.datetime_utc '2024-11-13 06:52:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8grz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8GRZ # _exptl.entry_id 8GRZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.318 _cell.angle_gamma 90 _cell.entry_id 8GRZ _cell.length_a 89.497 _cell.length_b 39.553 _cell.length_c 48.858 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 46 A CYS 46 1_555 A SG CYS 55 A CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A NE2 HIS 64 A HIS 64 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 8GRZ _atom_sites.fract_transf_matrix[1][1] 0.011174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006534 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 201 HEM HEM . C 3 HOH A 1 301 59 HOH HOH . C 3 HOH A 2 302 51 HOH HOH . C 3 HOH A 3 303 41 HOH HOH . C 3 HOH A 4 304 8 HOH HOH . C 3 HOH A 5 305 1 HOH HOH . C 3 HOH A 6 306 47 HOH HOH . C 3 HOH A 7 307 17 HOH HOH . C 3 HOH A 8 308 53 HOH HOH . C 3 HOH A 9 309 18 HOH HOH . C 3 HOH A 10 310 3 HOH HOH . C 3 HOH A 11 311 23 HOH HOH . C 3 HOH A 12 312 11 HOH HOH . C 3 HOH A 13 313 39 HOH HOH . C 3 HOH A 14 314 57 HOH HOH . C 3 HOH A 15 315 24 HOH HOH . C 3 HOH A 16 316 25 HOH HOH . C 3 HOH A 17 317 30 HOH HOH . C 3 HOH A 18 318 4 HOH HOH . C 3 HOH A 19 319 16 HOH HOH . C 3 HOH A 20 320 44 HOH HOH . C 3 HOH A 21 321 6 HOH HOH . C 3 HOH A 22 322 13 HOH HOH . C 3 HOH A 23 323 7 HOH HOH . C 3 HOH A 24 324 40 HOH HOH . C 3 HOH A 25 325 12 HOH HOH . C 3 HOH A 26 326 20 HOH HOH . C 3 HOH A 27 327 46 HOH HOH . C 3 HOH A 28 328 43 HOH HOH . C 3 HOH A 29 329 33 HOH HOH . C 3 HOH A 30 330 26 HOH HOH . C 3 HOH A 31 331 2 HOH HOH . C 3 HOH A 32 332 60 HOH HOH . C 3 HOH A 33 333 5 HOH HOH . C 3 HOH A 34 334 31 HOH HOH . C 3 HOH A 35 335 42 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 9 HOH HOH . C 3 HOH A 38 338 52 HOH HOH . C 3 HOH A 39 339 50 HOH HOH . C 3 HOH A 40 340 21 HOH HOH . C 3 HOH A 41 341 35 HOH HOH . C 3 HOH A 42 342 58 HOH HOH . C 3 HOH A 43 343 45 HOH HOH . C 3 HOH A 44 344 37 HOH HOH . C 3 HOH A 45 345 32 HOH HOH . C 3 HOH A 46 346 14 HOH HOH . C 3 HOH A 47 347 56 HOH HOH . C 3 HOH A 48 348 15 HOH HOH . C 3 HOH A 49 349 34 HOH HOH . C 3 HOH A 50 350 10 HOH HOH . C 3 HOH A 51 351 28 HOH HOH . C 3 HOH A 52 352 27 HOH HOH . C 3 HOH A 53 353 29 HOH HOH . C 3 HOH A 54 354 22 HOH HOH . C 3 HOH A 55 355 48 HOH HOH . C 3 HOH A 56 356 54 HOH HOH . C 3 HOH A 57 357 19 HOH HOH . C 3 HOH A 58 358 38 HOH HOH . C 3 HOH A 59 359 49 HOH HOH . C 3 HOH A 60 360 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 22.629 18.552 6.732 1 28.07 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 20.612 19.285 11.061 1 37.37 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 21.103 14.555 12.038 1 36.13 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 23.412 13.905 7.843 1 42.48 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 21.974 19.117 7.794 1 38.49 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 21.441 20.418 7.805 1 38.92 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 20.868 20.629 9.019 1 34.73 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 21.049 19.458 9.768 1 31.6 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 20.166 21.875 9.498 1 46.53 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 21.5 21.393 6.665 1 43.21 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 22.819 22.166 6.686 1 59.98 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 22.757 23.231 5.626 1 76.39 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 22.429 24.398 5.929 1 71.56 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 23.028 22.944 4.44 1 84.66 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 20.597 18.03 11.666 1 45.65 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 20.066 17.843 12.97 1 46.98 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 20.188 16.528 13.264 1 38.55 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 20.827 15.91 12.088 1 42.42 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 19.461 18.889 13.868 1 44.88 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 19.776 15.856 14.505 1 49.07 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 20.608 15.829 15.543 1 48.54 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 21.862 14.013 11.029 1 38.66 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 22.483 12.776 11.121 1 41.14 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 23.147 12.577 9.93 1 30.62 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 22.933 13.722 9.112 1 33.25 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 22.403 11.847 12.304 1 49.1 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 23.945 11.392 9.626 1 45.1 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 25.097 11.277 10.288 1 51.76 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 23.362 15.141 7.202 1 32.86 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 23.961 15.326 5.886 1 49.87 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 23.771 16.61 5.53 1 38.85 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 23.038 17.224 6.67 1 42.08 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 24.66 14.261 5.081 1 38.53 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 24.286 17.138 4.196 1 51.94 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 23.973 18.577 3.773 1 56.14 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 25.167 19.241 3.141 1 67.09 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 25.968 19.883 3.85 1 63.61 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 25.352 19.161 1.909 1 66.13 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 21.721 18.547 9.002 1 45.68 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 21.038 16.865 11.172 1 33.61 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 22.135 14.576 9.817 1 37.49 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 22.824 16.293 7.617 1 41.32 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 21.95 16.586 9.271 1 36.71 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #