data_8GSJ # _model_server_result.job_id V9u7o-dOtYkfSiwc9YPxig _model_server_result.datetime_utc '2024-11-15 07:47:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gsj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":807}' # _entry.id 8GSJ # _exptl.entry_id 8GSJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GSJ _cell.length_a 60.4 _cell.length_b 66.48 _cell.length_c 84.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GSJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C08 K8C . A K8C 801 1_555 C N GLU . A GLU 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 C C GLU . A GLU 802 1_555 D N NAL . A NAL 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 D C NAL . A NAL 803 1_555 E N LEU . A LEU 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 E C LEU . A LEU 804 1_555 F N1 GJZ . A GJZ 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 151 n n C1 C2 GOL sing 152 n n C1 H11 GOL sing 153 n n C1 H12 GOL sing 154 n n O1 HO1 GOL sing 155 n n C2 O2 GOL sing 156 n n C2 C3 GOL sing 157 n n C2 H2 GOL sing 158 n n O2 HO2 GOL sing 159 n n C3 O3 GOL sing 160 n n C3 H31 GOL sing 161 n n C3 H32 GOL sing 162 n n O3 HO3 GOL sing 163 n n # _atom_sites.entry_id 8GSJ _atom_sites.fract_transf_matrix[1][1] 0.016556 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K8C A 1 801 0 K8C SNB . C 3 GLU A 1 802 1 GLU GLU . D 4 NAL A 1 803 2 NAL ANA . E 5 LEU A 1 804 3 LEU LEU . F 6 GJZ A 1 805 4 GJZ TPH . G 7 GOL A 1 806 1 GOL GOL . H 7 GOL A 1 807 2 GOL GOL . I 7 GOL A 1 808 4 GOL GOL . J 7 GOL A 1 809 5 GOL GOL . K 8 SO4 A 1 810 1 SO4 SO4 . L 8 SO4 A 1 811 2 SO4 SO4 . M 9 HOH A 1 901 92 HOH HOH . M 9 HOH A 2 902 62 HOH HOH . M 9 HOH A 3 903 56 HOH HOH . M 9 HOH A 4 904 66 HOH HOH . M 9 HOH A 5 905 87 HOH HOH . M 9 HOH A 6 906 44 HOH HOH . M 9 HOH A 7 907 69 HOH HOH . M 9 HOH A 8 908 63 HOH HOH . M 9 HOH A 9 909 82 HOH HOH . M 9 HOH A 10 910 47 HOH HOH . M 9 HOH A 11 911 15 HOH HOH . M 9 HOH A 12 912 77 HOH HOH . M 9 HOH A 13 913 75 HOH HOH . M 9 HOH A 14 914 96 HOH HOH . M 9 HOH A 15 915 11 HOH HOH . M 9 HOH A 16 916 25 HOH HOH . M 9 HOH A 17 917 57 HOH HOH . M 9 HOH A 18 918 28 HOH HOH . M 9 HOH A 19 919 73 HOH HOH . M 9 HOH A 20 920 54 HOH HOH . M 9 HOH A 21 921 8 HOH HOH . M 9 HOH A 22 922 21 HOH HOH . M 9 HOH A 23 923 76 HOH HOH . M 9 HOH A 24 924 64 HOH HOH . M 9 HOH A 25 925 31 HOH HOH . M 9 HOH A 26 926 29 HOH HOH . M 9 HOH A 27 927 78 HOH HOH . M 9 HOH A 28 928 100 HOH HOH . M 9 HOH A 29 929 90 HOH HOH . M 9 HOH A 30 930 14 HOH HOH . M 9 HOH A 31 931 19 HOH HOH . M 9 HOH A 32 932 35 HOH HOH . M 9 HOH A 33 933 26 HOH HOH . M 9 HOH A 34 934 10 HOH HOH . M 9 HOH A 35 935 24 HOH HOH . M 9 HOH A 36 936 13 HOH HOH . M 9 HOH A 37 937 60 HOH HOH . M 9 HOH A 38 938 22 HOH HOH . M 9 HOH A 39 939 27 HOH HOH . M 9 HOH A 40 940 30 HOH HOH . M 9 HOH A 41 941 95 HOH HOH . M 9 HOH A 42 942 99 HOH HOH . M 9 HOH A 43 943 5 HOH HOH . M 9 HOH A 44 944 103 HOH HOH . M 9 HOH A 45 945 97 HOH HOH . M 9 HOH A 46 946 42 HOH HOH . M 9 HOH A 47 947 41 HOH HOH . M 9 HOH A 48 948 9 HOH HOH . M 9 HOH A 49 949 58 HOH HOH . M 9 HOH A 50 950 6 HOH HOH . M 9 HOH A 51 951 72 HOH HOH . M 9 HOH A 52 952 89 HOH HOH . M 9 HOH A 53 953 53 HOH HOH . M 9 HOH A 54 954 23 HOH HOH . M 9 HOH A 55 955 20 HOH HOH . M 9 HOH A 56 956 7 HOH HOH . M 9 HOH A 57 957 91 HOH HOH . M 9 HOH A 58 958 59 HOH HOH . M 9 HOH A 59 959 46 HOH HOH . M 9 HOH A 60 960 16 HOH HOH . M 9 HOH A 61 961 48 HOH HOH . M 9 HOH A 62 962 49 HOH HOH . M 9 HOH A 63 963 55 HOH HOH . M 9 HOH A 64 964 61 HOH HOH . M 9 HOH A 65 965 3 HOH HOH . M 9 HOH A 66 966 37 HOH HOH . M 9 HOH A 67 967 98 HOH HOH . M 9 HOH A 68 968 67 HOH HOH . M 9 HOH A 69 969 38 HOH HOH . M 9 HOH A 70 970 18 HOH HOH . M 9 HOH A 71 971 79 HOH HOH . M 9 HOH A 72 972 68 HOH HOH . M 9 HOH A 73 973 83 HOH HOH . M 9 HOH A 74 974 81 HOH HOH . M 9 HOH A 75 975 93 HOH HOH . M 9 HOH A 76 976 102 HOH HOH . M 9 HOH A 77 977 65 HOH HOH . M 9 HOH A 78 978 40 HOH HOH . M 9 HOH A 79 979 2 HOH HOH . M 9 HOH A 80 980 71 HOH HOH . M 9 HOH A 81 981 80 HOH HOH . M 9 HOH A 82 982 94 HOH HOH . M 9 HOH A 83 983 36 HOH HOH . M 9 HOH A 84 984 33 HOH HOH . M 9 HOH A 85 985 104 HOH HOH . M 9 HOH A 86 986 70 HOH HOH . M 9 HOH A 87 987 101 HOH HOH . M 9 HOH A 88 988 74 HOH HOH . M 9 HOH A 89 989 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 7 -12.878 8.685 -4.154 1 84.54 ? C1 GOL 807 A 1 HETATM 2 O O1 GOL . . . H 7 -13.67 9.872 -4.295 1 85.95 ? O1 GOL 807 A 1 HETATM 3 C C2 GOL . . . H 7 -11.466 8.962 -4.671 1 84.05 ? C2 GOL 807 A 1 HETATM 4 O O2 GOL . . . H 7 -10.605 7.857 -4.341 1 84.12 ? O2 GOL 807 A 1 HETATM 5 C C3 GOL . . . H 7 -11.506 9.241 -6.181 1 78.83 ? C3 GOL 807 A 1 HETATM 6 O O3 GOL . . . H 7 -10.866 8.22 -6.952 1 73.19 ? O3 GOL 807 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 71 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 1028 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #