data_8GTH
#
_model_server_result.job_id            6ti7pdoYSQuZxJZ2D_NMOg 
_model_server_result.datetime_utc      '2024-10-19 05:34:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gth 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":201}' 
#
_entry.id    8GTH 
#
_exptl.entry_id    8GTH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GTH 
_cell.length_a            71.63 
_cell.length_b            71.63 
_cell.length_c            349.76 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GTH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G 1 1 
B,H 2 1 
C,I 3 1 
D,J 4 1 
E,K 5 1 
F,L 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 20 A CYS 61 1_555 G CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale2 A SG CYS 23 A CYS 64 1_555 G CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale3 B SG CYS 20 B CYS 61 1_555 H CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? 
covale ? covale4 B SG CYS 23 B CYS 64 1_555 H CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale5 C SG CYS 20 C CYS 61 1_555 I CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale6 C SG CYS 23 C CYS 64 1_555 I CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale7 D SG CYS 20 E CYS 61 1_555 J CAB HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale8 D SG CYS 23 E CYS 64 1_555 J CAC HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale9 E SG CYS 20 F CYS 61 1_555 K CAB HEC . F HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale10 E SG CYS 23 F CYS 64 1_555 K CAC HEC . F HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale11 F SG CYS 20 D CYS 61 1_555 L CAB HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale12 F SG CYS 23 D CYS 64 1_555 L CAC HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
metalc ? metalc1 A NE2 HIS 24 A HIS 65 1_555 G FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc2 A SD MET 83 A MET 124 1_555 G FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc3 B NE2 HIS 24 B HIS 65 1_555 H FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc4 B SD MET 83 B MET 124 1_555 H FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc5 C NE2 HIS 24 C HIS 65 1_555 I FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc6 C SD MET 83 C MET 124 1_555 I FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc7 D NE2 HIS 24 E HIS 65 1_555 J FE HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc8 D SD MET 83 E MET 124 1_555 J FE HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc9 E NE2 HIS 24 F HIS 65 1_555 K FE HEC . F HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc10 E SD MET 83 F MET 124 1_555 K FE HEC . F HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc11 F NE2 HIS 24 D HIS 65 1_555 L FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc12 F SD MET 83 D MET 124 1_555 L FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 129 n n 
FE NB HEC sing 130 n n 
FE NC HEC sing 131 n n 
FE ND HEC sing 132 n n 
CHA C1A HEC doub 133 n n 
CHA C4D HEC sing 134 n n 
CHA HHA HEC sing 135 n n 
CHB C4A HEC doub 136 n n 
CHB C1B HEC sing 137 n n 
CHB HHB HEC sing 138 n n 
CHC C4B HEC doub 139 n n 
CHC C1C HEC sing 140 n n 
CHC HHC HEC sing 141 n n 
CHD C4C HEC doub 142 n n 
CHD C1D HEC sing 143 n n 
CHD HHD HEC sing 144 n n 
NA C1A HEC sing 145 n y 
NA C4A HEC sing 146 n y 
C1A C2A HEC sing 147 n y 
C2A C3A HEC doub 148 n y 
C2A CAA HEC sing 149 n n 
C3A C4A HEC sing 150 n y 
C3A CMA HEC sing 151 n n 
CMA HMA1 HEC sing 152 n n 
CMA HMA2 HEC sing 153 n n 
CMA HMA3 HEC sing 154 n n 
CAA CBA HEC sing 155 n n 
CAA HAA1 HEC sing 156 n n 
CAA HAA2 HEC sing 157 n n 
CBA CGA HEC sing 158 n n 
CBA HBA1 HEC sing 159 n n 
CBA HBA2 HEC sing 160 n n 
CGA O1A HEC doub 161 n n 
CGA O2A HEC sing 162 n n 
O2A H2A HEC sing 163 n n 
NB C1B HEC sing 164 n y 
NB C4B HEC sing 165 n y 
C1B C2B HEC doub 166 n y 
C2B C3B HEC sing 167 n y 
C2B CMB HEC sing 168 n n 
C3B C4B HEC sing 169 n y 
C3B CAB HEC doub 170 e n 
CMB HMB1 HEC sing 171 n n 
CMB HMB2 HEC sing 172 n n 
CMB HMB3 HEC sing 173 n n 
CAB CBB HEC sing 174 n n 
CAB HAB HEC sing 175 n n 
CBB HBB1 HEC sing 176 n n 
CBB HBB2 HEC sing 177 n n 
CBB HBB3 HEC sing 178 n n 
NC C1C HEC sing 179 n y 
NC C4C HEC sing 180 n y 
C1C C2C HEC doub 181 n y 
C2C C3C HEC sing 182 n y 
C2C CMC HEC sing 183 n n 
C3C C4C HEC sing 184 n y 
C3C CAC HEC doub 185 e n 
CMC HMC1 HEC sing 186 n n 
CMC HMC2 HEC sing 187 n n 
CMC HMC3 HEC sing 188 n n 
CAC CBC HEC sing 189 n n 
CAC HAC HEC sing 190 n n 
CBC HBC1 HEC sing 191 n n 
CBC HBC2 HEC sing 192 n n 
CBC HBC3 HEC sing 193 n n 
ND C1D HEC sing 194 n y 
ND C4D HEC sing 195 n y 
C1D C2D HEC doub 196 n y 
C2D C3D HEC sing 197 n y 
C2D CMD HEC sing 198 n n 
C3D C4D HEC doub 199 n y 
C3D CAD HEC sing 200 n n 
CMD HMD1 HEC sing 201 n n 
CMD HMD2 HEC sing 202 n n 
CMD HMD3 HEC sing 203 n n 
CAD CBD HEC sing 204 n n 
CAD HAD1 HEC sing 205 n n 
CAD HAD2 HEC sing 206 n n 
CBD CGD HEC sing 207 n n 
CBD HBD1 HEC sing 208 n n 
CBD HBD2 HEC sing 209 n n 
CGD O1D HEC doub 210 n n 
CGD O2D HEC sing 211 n n 
O2D H2D HEC sing 212 n n 
#
_atom_sites.entry_id                     8GTH 
_atom_sites.fract_transf_matrix[1][1]    0.013961 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013961 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002859 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 HEC A 1 201 201 HEC HEC . 
H 2 HEC B 1 201 201 HEC HEC . 
I 2 HEC C 1 201 201 HEC HEC . 
J 2 HEC E 1 201 201 HEC HEC . 
K 2 HEC F 1 201 201 HEC HEC . 
L 2 HEC D 1 201 201 HEC HEC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . I 2 -11.109 31.801 3.937 1 46.68 ? FE HEC 201 C 1 
HETATM 2 C CHA HEC . . . I 2 -10.741 29.305 6.247 1 52.02 ? CHA HEC 201 C 1 
HETATM 3 C CHB HEC . . . I 2 -14.248 30.595 3.158 1 54.24 ? CHB HEC 201 C 1 
HETATM 4 C CHC HEC . . . I 2 -11.483 34.216 1.495 1 56.59 ? CHC HEC 201 C 1 
HETATM 5 C CHD HEC . . . I 2 -7.85 32.82 4.397 1 49.05 ? CHD HEC 201 C 1 
HETATM 6 N NA HEC . . . I 2 -12.264 30.217 4.557 1 46.8 ? NA HEC 201 C 1 
HETATM 7 C C1A HEC . . . I 2 -11.946 29.345 5.58 1 48.58 ? C1A HEC 201 C 1 
HETATM 8 C C2A HEC . . . I 2 -13.105 28.502 5.822 1 50.27 ? C2A HEC 201 C 1 
HETATM 9 C C3A HEC . . . I 2 -14.063 28.862 4.969 1 48.52 ? C3A HEC 201 C 1 
HETATM 10 C C4A HEC . . . I 2 -13.558 29.947 4.156 1 48.3 ? C4A HEC 201 C 1 
HETATM 11 C CMA HEC . . . I 2 -15.468 28.23 4.871 1 49.22 ? CMA HEC 201 C 1 
HETATM 12 C CAA HEC . . . I 2 -13.244 27.375 6.866 1 47.99 ? CAA HEC 201 C 1 
HETATM 13 C CBA HEC . . . I 2 -12.238 26.264 6.596 1 47.5 ? CBA HEC 201 C 1 
HETATM 14 C CGA HEC . . . I 2 -12.49 25.147 7.571 1 57.33 ? CGA HEC 201 C 1 
HETATM 15 O O1A HEC . . . I 2 -11.541 24.777 8.305 1 56.95 ? O1A HEC 201 C 1 
HETATM 16 O O2A HEC . . . I 2 -13.639 24.638 7.624 1 55.12 ? O2A HEC 201 C 1 
HETATM 17 N NB HEC . . . I 2 -12.557 32.267 2.531 1 52.57 ? NB HEC 201 C 1 
HETATM 18 C C1B HEC . . . I 2 -13.827 31.724 2.493 1 54.53 ? C1B HEC 201 C 1 
HETATM 19 C C2B HEC . . . I 2 -14.646 32.552 1.636 1 58.38 ? C2B HEC 201 C 1 
HETATM 20 C C3B HEC . . . I 2 -13.887 33.548 1.167 1 55.51 ? C3B HEC 201 C 1 
HETATM 21 C C4B HEC . . . I 2 -12.56 33.391 1.726 1 54.12 ? C4B HEC 201 C 1 
HETATM 22 C CMB HEC . . . I 2 -16.132 32.283 1.321 1 64.95 ? CMB HEC 201 C 1 
HETATM 23 C CAB HEC . . . I 2 -14.322 34.687 0.215 1 60.28 ? CAB HEC 201 C 1 
HETATM 24 C CBB HEC . . . I 2 -15.27 35.667 0.943 1 68.14 ? CBB HEC 201 C 1 
HETATM 25 N NC HEC . . . I 2 -9.897 33.241 3.103 1 52.12 ? NC HEC 201 C 1 
HETATM 26 C C1C HEC . . . I 2 -10.255 34.136 2.112 1 52.95 ? C1C HEC 201 C 1 
HETATM 27 C C2C HEC . . . I 2 -9.159 35.061 1.919 1 52.83 ? C2C HEC 201 C 1 
HETATM 28 C C3C HEC . . . I 2 -8.117 34.602 2.624 1 55.73 ? C3C HEC 201 C 1 
HETATM 29 C C4C HEC . . . I 2 -8.584 33.499 3.446 1 52.67 ? C4C HEC 201 C 1 
HETATM 30 C CMC HEC . . . I 2 -9.108 36.108 0.784 1 57.23 ? CMC HEC 201 C 1 
HETATM 31 C CAC HEC . . . I 2 -6.699 35.216 2.673 1 54.59 ? CAC HEC 201 C 1 
HETATM 32 C CBC HEC . . . I 2 -6.746 36.626 3.301 1 59.01 ? CBC HEC 201 C 1 
HETATM 33 N ND HEC . . . I 2 -9.546 31.181 5.148 1 45.61 ? ND HEC 201 C 1 
HETATM 34 C C1D HEC . . . I 2 -8.262 31.724 5.129 1 49.19 ? C1D HEC 201 C 1 
HETATM 35 C C2D HEC . . . I 2 -7.419 30.948 6.014 1 50.81 ? C2D HEC 201 C 1 
HETATM 36 C C3D HEC . . . I 2 -8.329 29.852 6.584 1 45.32 ? C3D HEC 201 C 1 
HETATM 37 C C4D HEC . . . I 2 -9.626 30.077 5.994 1 47.08 ? C4D HEC 201 C 1 
HETATM 38 C CMD HEC . . . I 2 -5.921 31.173 6.314 1 50.15 ? CMD HEC 201 C 1 
HETATM 39 C CAD HEC . . . I 2 -7.964 28.738 7.585 1 46.84 ? CAD HEC 201 C 1 
HETATM 40 C CBD HEC . . . I 2 -7.678 29.35 8.95 1 50.36 ? CBD HEC 201 C 1 
HETATM 41 C CGD HEC . . . I 2 -7.486 28.241 9.948 1 54.42 ? CGD HEC 201 C 1 
HETATM 42 O O1D HEC . . . I 2 -6.809 28.482 10.979 1 52.33 ? O1D HEC 201 C 1 
HETATM 43 O O2D HEC . . . I 2 -7.996 27.117 9.707 1 54.89 ? O2D HEC 201 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#