data_8GTH
#
_model_server_result.job_id            1Z0SAxIR54uWQfkCWSJKqQ 
_model_server_result.datetime_utc      '2024-10-19 05:24:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gth 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":201}' 
#
_entry.id    8GTH 
#
_exptl.entry_id    8GTH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GTH 
_cell.length_a            71.63 
_cell.length_b            71.63 
_cell.length_c            349.76 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GTH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G 1 1 
B,H 2 1 
C,I 3 1 
D,J 4 1 
E,K 5 1 
F,L 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 20 A CYS 61 1_555 G CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale2 A SG CYS 23 A CYS 64 1_555 G CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale3 B SG CYS 20 B CYS 61 1_555 H CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? 
covale ? covale4 B SG CYS 23 B CYS 64 1_555 H CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale5 C SG CYS 20 C CYS 61 1_555 I CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale6 C SG CYS 23 C CYS 64 1_555 I CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale7 D SG CYS 20 E CYS 61 1_555 J CAB HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale8 D SG CYS 23 E CYS 64 1_555 J CAC HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale9 E SG CYS 20 F CYS 61 1_555 K CAB HEC . F HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale10 E SG CYS 23 F CYS 64 1_555 K CAC HEC . F HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale11 F SG CYS 20 D CYS 61 1_555 L CAB HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale12 F SG CYS 23 D CYS 64 1_555 L CAC HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
metalc ? metalc1 A NE2 HIS 24 A HIS 65 1_555 G FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc2 A SD MET 83 A MET 124 1_555 G FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc3 B NE2 HIS 24 B HIS 65 1_555 H FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc4 B SD MET 83 B MET 124 1_555 H FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc5 C NE2 HIS 24 C HIS 65 1_555 I FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc6 C SD MET 83 C MET 124 1_555 I FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc7 D NE2 HIS 24 E HIS 65 1_555 J FE HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc8 D SD MET 83 E MET 124 1_555 J FE HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc9 E NE2 HIS 24 F HIS 65 1_555 K FE HEC . F HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc10 E SD MET 83 F MET 124 1_555 K FE HEC . F HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc11 F NE2 HIS 24 D HIS 65 1_555 L FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc12 F SD MET 83 D MET 124 1_555 L FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 129 n n 
FE NB HEC sing 130 n n 
FE NC HEC sing 131 n n 
FE ND HEC sing 132 n n 
CHA C1A HEC doub 133 n n 
CHA C4D HEC sing 134 n n 
CHA HHA HEC sing 135 n n 
CHB C4A HEC doub 136 n n 
CHB C1B HEC sing 137 n n 
CHB HHB HEC sing 138 n n 
CHC C4B HEC doub 139 n n 
CHC C1C HEC sing 140 n n 
CHC HHC HEC sing 141 n n 
CHD C4C HEC doub 142 n n 
CHD C1D HEC sing 143 n n 
CHD HHD HEC sing 144 n n 
NA C1A HEC sing 145 n y 
NA C4A HEC sing 146 n y 
C1A C2A HEC sing 147 n y 
C2A C3A HEC doub 148 n y 
C2A CAA HEC sing 149 n n 
C3A C4A HEC sing 150 n y 
C3A CMA HEC sing 151 n n 
CMA HMA1 HEC sing 152 n n 
CMA HMA2 HEC sing 153 n n 
CMA HMA3 HEC sing 154 n n 
CAA CBA HEC sing 155 n n 
CAA HAA1 HEC sing 156 n n 
CAA HAA2 HEC sing 157 n n 
CBA CGA HEC sing 158 n n 
CBA HBA1 HEC sing 159 n n 
CBA HBA2 HEC sing 160 n n 
CGA O1A HEC doub 161 n n 
CGA O2A HEC sing 162 n n 
O2A H2A HEC sing 163 n n 
NB C1B HEC sing 164 n y 
NB C4B HEC sing 165 n y 
C1B C2B HEC doub 166 n y 
C2B C3B HEC sing 167 n y 
C2B CMB HEC sing 168 n n 
C3B C4B HEC sing 169 n y 
C3B CAB HEC doub 170 e n 
CMB HMB1 HEC sing 171 n n 
CMB HMB2 HEC sing 172 n n 
CMB HMB3 HEC sing 173 n n 
CAB CBB HEC sing 174 n n 
CAB HAB HEC sing 175 n n 
CBB HBB1 HEC sing 176 n n 
CBB HBB2 HEC sing 177 n n 
CBB HBB3 HEC sing 178 n n 
NC C1C HEC sing 179 n y 
NC C4C HEC sing 180 n y 
C1C C2C HEC doub 181 n y 
C2C C3C HEC sing 182 n y 
C2C CMC HEC sing 183 n n 
C3C C4C HEC sing 184 n y 
C3C CAC HEC doub 185 e n 
CMC HMC1 HEC sing 186 n n 
CMC HMC2 HEC sing 187 n n 
CMC HMC3 HEC sing 188 n n 
CAC CBC HEC sing 189 n n 
CAC HAC HEC sing 190 n n 
CBC HBC1 HEC sing 191 n n 
CBC HBC2 HEC sing 192 n n 
CBC HBC3 HEC sing 193 n n 
ND C1D HEC sing 194 n y 
ND C4D HEC sing 195 n y 
C1D C2D HEC doub 196 n y 
C2D C3D HEC sing 197 n y 
C2D CMD HEC sing 198 n n 
C3D C4D HEC doub 199 n y 
C3D CAD HEC sing 200 n n 
CMD HMD1 HEC sing 201 n n 
CMD HMD2 HEC sing 202 n n 
CMD HMD3 HEC sing 203 n n 
CAD CBD HEC sing 204 n n 
CAD HAD1 HEC sing 205 n n 
CAD HAD2 HEC sing 206 n n 
CBD CGD HEC sing 207 n n 
CBD HBD1 HEC sing 208 n n 
CBD HBD2 HEC sing 209 n n 
CGD O1D HEC doub 210 n n 
CGD O2D HEC sing 211 n n 
O2D H2D HEC sing 212 n n 
#
_atom_sites.entry_id                     8GTH 
_atom_sites.fract_transf_matrix[1][1]    0.013961 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013961 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002859 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 HEC A 1 201 201 HEC HEC . 
H 2 HEC B 1 201 201 HEC HEC . 
I 2 HEC C 1 201 201 HEC HEC . 
J 2 HEC E 1 201 201 HEC HEC . 
K 2 HEC F 1 201 201 HEC HEC . 
L 2 HEC D 1 201 201 HEC HEC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . L 2 -0.976 22.069 56.545 1 41.03 ? FE HEC 201 D 1 
HETATM 2 C CHA HEC . . . L 2 -3.405 21.641 54.168 1 56.7 ? CHA HEC 201 D 1 
HETATM 3 C CHB HEC . . . L 2 -1.521 18.844 57.648 1 56.57 ? CHB HEC 201 D 1 
HETATM 4 C CHC HEC . . . L 2 1.659 22.334 58.764 1 59.53 ? CHC HEC 201 D 1 
HETATM 5 C CHD HEC . . . L 2 -0.662 25.376 55.779 1 56.06 ? CHD HEC 201 D 1 
HETATM 6 N NA HEC . . . L 2 -2.245 20.533 56.021 1 51.01 ? NA HEC 201 D 1 
HETATM 7 C C1A HEC . . . L 2 -3.149 20.555 54.977 1 52.06 ? C1A HEC 201 D 1 
HETATM 8 C C2A HEC . . . L 2 -3.76 19.24 54.889 1 52.07 ? C2A HEC 201 D 1 
HETATM 9 C C3A HEC . . . L 2 -3.238 18.476 55.851 1 51.27 ? C3A HEC 201 D 1 
HETATM 10 C C4A HEC . . . L 2 -2.275 19.271 56.581 1 53.09 ? C4A HEC 201 D 1 
HETATM 11 C CMA HEC . . . L 2 -3.594 17.001 56.136 1 49.53 ? CMA HEC 201 D 1 
HETATM 12 C CAA HEC . . . L 2 -4.834 18.784 53.879 1 51 ? CAA HEC 201 D 1 
HETATM 13 C CBA HEC . . . L 2 -6.109 19.593 54.087 1 51.73 ? CBA HEC 201 D 1 
HETATM 14 C CGA HEC . . . L 2 -7.14 19.16 53.082 1 56.07 ? CGA HEC 201 D 1 
HETATM 15 O O1A HEC . . . L 2 -7.429 17.938 53.002 1 54.12 ? O1A HEC 201 D 1 
HETATM 16 O O2A HEC . . . L 2 -7.678 20.041 52.367 1 60.94 ? O2A HEC 201 D 1 
HETATM 17 N NB HEC . . . L 2 -0.103 20.833 57.943 1 49.83 ? NB HEC 201 D 1 
HETATM 18 C C1B HEC . . . L 2 -0.48 19.534 58.224 1 55.55 ? C1B HEC 201 D 1 
HETATM 19 C C2B HEC . . . L 2 0.415 19.011 59.229 1 56.26 ? C2B HEC 201 D 1 
HETATM 20 C C3B HEC . . . L 2 1.291 19.97 59.548 1 51.82 ? C3B HEC 201 D 1 
HETATM 21 C C4B HEC . . . L 2 0.986 21.134 58.741 1 52.13 ? C4B HEC 201 D 1 
HETATM 22 C CMB HEC . . . L 2 0.323 17.591 59.824 1 49.02 ? CMB HEC 201 D 1 
HETATM 23 C CAB HEC . . . L 2 2.443 19.878 60.574 1 45.46 ? CAB HEC 201 D 1 
HETATM 24 C CBB HEC . . . L 2 3.557 18.941 60.057 1 50.18 ? CBB HEC 201 D 1 
HETATM 25 N NC HEC . . . L 2 0.238 23.579 57.194 1 51.96 ? NC HEC 201 D 1 
HETATM 26 C C1C HEC . . . L 2 1.32 23.459 58.045 1 56.16 ? C1C HEC 201 D 1 
HETATM 27 C C2C HEC . . . L 2 2.121 24.66 57.927 1 55.44 ? C2C HEC 201 D 1 
HETATM 28 C C3C HEC . . . L 2 1.397 25.55 57.236 1 59.46 ? C3C HEC 201 D 1 
HETATM 29 C C4C HEC . . . L 2 0.253 24.856 56.67 1 56.6 ? C4C HEC 201 D 1 
HETATM 30 C CMC HEC . . . L 2 3.296 25.002 58.871 1 60.79 ? CMC HEC 201 D 1 
HETATM 31 C CAC HEC . . . L 2 1.797 27.011 56.928 1 61.25 ? CAC HEC 201 D 1 
HETATM 32 C CBC HEC . . . L 2 3.005 27.026 55.967 1 65.54 ? CBC HEC 201 D 1 
HETATM 33 N ND HEC . . . L 2 -1.9 23.319 55.193 1 49.54 ? ND HEC 201 D 1 
HETATM 34 C C1D HEC . . . L 2 -1.58 24.665 55.032 1 56.56 ? C1D HEC 201 D 1 
HETATM 35 C C2D HEC . . . L 2 -2.369 25.203 53.945 1 53.31 ? C2D HEC 201 D 1 
HETATM 36 C C3D HEC . . . L 2 -3.229 24.028 53.445 1 52.05 ? C3D HEC 201 D 1 
HETATM 37 C C4D HEC . . . L 2 -2.866 22.906 54.28 1 53.65 ? C4D HEC 201 D 1 
HETATM 38 C CMD HEC . . . L 2 -2.335 26.659 53.427 1 47.21 ? CMD HEC 201 D 1 
HETATM 39 C CAD HEC . . . L 2 -4.269 23.993 52.302 1 44.2 ? CAD HEC 201 D 1 
HETATM 40 C CBD HEC . . . L 2 -3.709 24.576 51.01 1 49.56 ? CBD HEC 201 D 1 
HETATM 41 C CGD HEC . . . L 2 -4.841 24.741 50.034 1 51.92 ? CGD HEC 201 D 1 
HETATM 42 O O1D HEC . . . L 2 -5.882 24.054 50.202 1 59.29 ? O1D HEC 201 D 1 
HETATM 43 O O2D HEC . . . L 2 -4.702 25.559 49.09 1 54.27 ? O2D HEC 201 D 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#