data_8GTM # _model_server_result.job_id 5PV6SNNEPoJoy1j4tg-yCg _model_server_result.datetime_utc '2024-11-24 16:03:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gtm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8GTM # _exptl.entry_id 8GTM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 599.387 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-(4-bromanyl-2,6-dimethoxy-phenyl)-4,8-dimethyl-~{N},~{N}-bis[4,4,4-tris(fluoranyl)butyl]-1$l^{4},3,5,9-tetrazabicyclo[4.3.0]nona-1(6),2,4,8-tetraen-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.82 _cell.angle_gamma 90 _cell.entry_id 8GTM _cell.length_a 95.66 _cell.length_b 70.65 _cell.length_c 86.75 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 86 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 188 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 156 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 258 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.968 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H27 Br F6 N5 O2' _chem_comp.formula_weight 599.387 _chem_comp.id 0VI _chem_comp.mon_nstd_flag . _chem_comp.name 7-(4-bromanyl-2,6-dimethoxy-phenyl)-4,8-dimethyl-~{N},~{N}-bis[4,4,4-tris(fluoranyl)butyl]-1$l^{4},3,5,9-tetrazabicyclo[4.3.0]nona-1(6),2,4,8-tetraen-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F30 C26 0VI sing 1 n n C25 C26 0VI sing 2 n n C25 C24 0VI sing 3 n n F34 C29 0VI sing 4 n n C26 F31 0VI sing 5 n n C26 F32 0VI sing 6 n n C23 C24 0VI sing 7 n n C23 N21 0VI sing 8 n n C28 C29 0VI sing 9 n n C28 C27 0VI sing 10 n n C29 F33 0VI sing 11 n n C29 F35 0VI sing 12 n n C22 N21 0VI sing 13 n n C22 C27 0VI sing 14 n n N21 C15 0VI sing 15 n n N16 C15 0VI doub 16 n y N16 C17 0VI sing 17 n y C15 N13 0VI sing 18 n y C19 C17 0VI sing 19 n n C17 N18 0VI doub 20 n y N13 N12 0VI sing 21 n n N13 C14 0VI doub 22 n y N12 C11 0VI doub 23 n n N18 C14 0VI sing 24 n y C14 C10 0VI sing 25 n n C11 C10 0VI sing 26 n n C11 C20 0VI sing 27 n n C10 C05 0VI sing 28 n n O08 C37 0VI sing 29 n n O08 C04 0VI sing 30 n n C05 C04 0VI doub 31 n y C05 C06 0VI sing 32 n y C04 C03 0VI sing 33 n y O07 C06 0VI sing 34 n n O07 C36 0VI sing 35 n n C06 C01 0VI doub 36 n y C03 C02 0VI doub 37 n y C01 C02 0VI sing 38 n y C02 BR1 0VI sing 39 n n C01 H11 0VI sing 40 n n C03 H12 0VI sing 41 n n C10 H13 0VI sing 42 n n C19 H92 0VI sing 43 n n C19 H93 0VI sing 44 n n C19 H91 0VI sing 45 n n C20 H02 0VI sing 46 n n C20 H03 0VI sing 47 n n C20 H01 0VI sing 48 n n C22 H21 0VI sing 49 n n C22 H22 0VI sing 50 n n C23 H31 0VI sing 51 n n C23 H32 0VI sing 52 n n C24 H42 0VI sing 53 n n C24 H41 0VI sing 54 n n C25 H51 0VI sing 55 n n C25 H52 0VI sing 56 n n C27 H74 0VI sing 57 n n C27 H75 0VI sing 58 n n C28 H82 0VI sing 59 n n C28 H81 0VI sing 60 n n C36 H63 0VI sing 61 n n C36 H62 0VI sing 62 n n C36 H61 0VI sing 63 n n C37 H71 0VI sing 64 n n C37 H72 0VI sing 65 n n C37 H73 0VI sing 66 n n # _atom_sites.entry_id 8GTM _atom_sites.fract_transf_matrix[1][1] 0.010454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001436 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011636 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 0VI _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id 0VI _pdbx_nonpoly_scheme.auth_mon_id 203 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 0VI . . . C 3 21.525 7.065 5.485 1 50.46 ? C14 0VI 401 A 1 HETATM 2 C C11 0VI . . . C 3 23.851 6.758 5.896 1 51.88 ? C11 0VI 401 A 1 HETATM 3 N N12 0VI . . . C 3 23.668 6.775 4.455 1 53.49 ? N12 0VI 401 A 1 HETATM 4 C C01 0VI . . . C 3 21.551 6.874 10.189 1 51.67 ? C01 0VI 401 A 1 HETATM 5 C C02 0VI . . . C 3 21.363 8.229 10.425 1 58.91 ? C02 0VI 401 A 1 HETATM 6 C C03 0VI . . . C 3 21.543 9.151 9.404 1 54.57 ? C03 0VI 401 A 1 HETATM 7 C C04 0VI . . . C 3 21.951 8.65 8.179 1 58.24 ? C04 0VI 401 A 1 HETATM 8 C C05 0VI . . . C 3 22.103 7.157 7.959 1 55.51 ? C05 0VI 401 A 1 HETATM 9 C C06 0VI . . . C 3 21.952 6.382 8.951 1 52.92 ? C06 0VI 401 A 1 HETATM 10 C C10 0VI . . . C 3 22.527 6.867 6.533 1 49.33 ? C10 0VI 401 A 1 HETATM 11 C C15 0VI . . . C 3 21.459 6.814 3.101 1 45.49 ? C15 0VI 401 A 1 HETATM 12 C C17 0VI . . . C 3 19.496 6.932 4.408 1 51.1 ? C17 0VI 401 A 1 HETATM 13 C C19 0VI . . . C 3 17.975 6.997 4.475 1 50.14 ? C19 0VI 401 A 1 HETATM 14 C C20 0VI . . . C 3 25.197 6.771 6.575 1 55.15 ? C20 0VI 401 A 1 HETATM 15 C C22 0VI . . . C 3 21.242 6.172 0.682 1 60.57 ? C22 0VI 401 A 1 HETATM 16 C C23 0VI . . . C 3 23.485 7.08 1.559 1 56.29 ? C23 0VI 401 A 1 HETATM 17 C C24 0VI . . . C 3 23.62 8.579 1.902 1 52.52 ? C24 0VI 401 A 1 HETATM 18 C C25 0VI . . . C 3 24.694 9.348 1.114 1 64.09 ? C25 0VI 401 A 1 HETATM 19 C C26 0VI . . . C 3 24.534 10.872 1.16 1 64.67 ? C26 0VI 401 A 1 HETATM 20 C C27 0VI . . . C 3 21.834 4.853 0.139 1 53.33 ? C27 0VI 401 A 1 HETATM 21 C C28 0VI . . . C 3 21.349 3.715 1.059 1 55.74 ? C28 0VI 401 A 1 HETATM 22 C C29 0VI . . . C 3 21.897 2.4 0.543 1 53.68 ? C29 0VI 401 A 1 HETATM 23 C C36 0VI . . . C 3 22.399 4.156 9.626 1 61.7 ? C36 0VI 401 A 1 HETATM 24 C C37 0VI . . . C 3 21.451 10.802 7.199 1 52.4 ? C37 0VI 401 A 1 HETATM 25 F F30 0VI . . . C 3 24.18 11.351 2.388 1 66.34 ? F30 0VI 401 A 1 HETATM 26 F F31 0VI . . . C 3 23.575 11.235 0.27 1 62.52 ? F31 0VI 401 A 1 HETATM 27 F F32 0VI . . . C 3 25.722 11.451 0.81 1 61.14 ? F32 0VI 401 A 1 HETATM 28 F F33 0VI . . . C 3 21.631 1.43 1.443 1 62.07 ? F33 0VI 401 A 1 HETATM 29 F F34 0VI . . . C 3 21.263 2.067 -0.585 1 56.28 ? F34 0VI 401 A 1 HETATM 30 F F35 0VI . . . C 3 23.232 2.561 0.294 1 53.45 ? F35 0VI 401 A 1 HETATM 31 N N13 0VI . . . C 3 22.188 6.845 4.222 1 50.65 ? N13 0VI 401 A 1 HETATM 32 N N16 0VI . . . C 3 20.116 6.886 3.173 1 52.44 ? N16 0VI 401 A 1 HETATM 33 N N18 0VI . . . C 3 20.221 6.955 5.537 1 50.08 ? N18 0VI 401 A 1 HETATM 34 N N21 0VI . . . C 3 22.079 6.756 1.785 1 55.42 ? N21 0VI 401 A 1 HETATM 35 O O07 0VI . . . C 3 22.172 5.064 8.584 1 54.28 ? O07 0VI 401 A 1 HETATM 36 O O08 0VI . . . C 3 22.159 9.602 7.129 1 56.4 ? O08 0VI 401 A 1 HETATM 37 BR BR1 0VI . . . C 3 20.838 8.919 12.147 1 55.02 ? BR1 0VI 401 A 1 HETATM 38 H H11 0VI . . . C 3 21.403 6.273 10.884 1 62.27 ? H11 0VI 401 A 1 HETATM 39 H H12 0VI . . . C 3 21.396 10.06 9.536 1 65.75 ? H12 0VI 401 A 1 HETATM 40 H H13 0VI . . . C 3 21.682 6.404 6.423 1 59.46 ? H13 0VI 401 A 1 HETATM 41 H H92 0VI . . . C 3 17.6 6.644 3.653 1 60.43 ? H92 0VI 401 A 1 HETATM 42 H H93 0VI . . . C 3 17.662 6.469 5.226 1 60.43 ? H93 0VI 401 A 1 HETATM 43 H H91 0VI . . . C 3 17.695 7.919 4.588 1 60.43 ? H91 0VI 401 A 1 HETATM 44 H H02 0VI . . . C 3 25.19 6.148 7.318 1 66.44 ? H02 0VI 401 A 1 HETATM 45 H H03 0VI . . . C 3 25.882 6.508 5.939 1 66.44 ? H03 0VI 401 A 1 HETATM 46 H H01 0VI . . . C 3 25.386 7.664 6.902 1 66.44 ? H01 0VI 401 A 1 HETATM 47 H H21 0VI . . . C 3 21.187 6.813 -0.044 1 72.95 ? H21 0VI 401 A 1 HETATM 48 H H22 0VI . . . C 3 20.351 5.997 1.023 1 72.95 ? H22 0VI 401 A 1 HETATM 49 H H31 0VI . . . C 3 23.726 6.92 0.633 1 67.82 ? H31 0VI 401 A 1 HETATM 50 H H32 0VI . . . C 3 24.053 6.547 2.136 1 67.82 ? H32 0VI 401 A 1 HETATM 51 H H42 0VI . . . C 3 23.83 8.653 2.846 1 63.29 ? H42 0VI 401 A 1 HETATM 52 H H41 0VI . . . C 3 22.764 9.004 1.736 1 63.29 ? H41 0VI 401 A 1 HETATM 53 H H51 0VI . . . C 3 24.658 9.064 0.187 1 77.18 ? H51 0VI 401 A 1 HETATM 54 H H52 0VI . . . C 3 25.564 9.121 1.479 1 77.18 ? H52 0VI 401 A 1 HETATM 55 H H74 0VI . . . C 3 21.531 4.7 -0.77 1 64.26 ? H74 0VI 401 A 1 HETATM 56 H H75 0VI . . . C 3 22.804 4.896 0.143 1 64.26 ? H75 0VI 401 A 1 HETATM 57 H H82 0VI . . . C 3 21.663 3.869 1.964 1 67.15 ? H82 0VI 401 A 1 HETATM 58 H H81 0VI . . . C 3 20.38 3.688 1.063 1 67.15 ? H81 0VI 401 A 1 HETATM 59 H H63 0VI . . . C 3 22.895 3.393 9.289 1 74.3 ? H63 0VI 401 A 1 HETATM 60 H H62 0VI . . . C 3 22.91 4.59 10.327 1 74.3 ? H62 0VI 401 A 1 HETATM 61 H H61 0VI . . . C 3 21.549 3.856 9.985 1 74.3 ? H61 0VI 401 A 1 HETATM 62 H H71 0VI . . . C 3 20.534 10.622 7.458 1 63.14 ? H71 0VI 401 A 1 HETATM 63 H H72 0VI . . . C 3 21.864 11.384 7.856 1 63.14 ? H72 0VI 401 A 1 HETATM 64 H H73 0VI . . . C 3 21.463 11.236 6.331 1 63.14 ? H73 0VI 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 516 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 64 #