data_8GTR # _model_server_result.job_id ReTnurhB_ValcVl-kx-hoQ _model_server_result.datetime_utc '2024-12-22 02:29:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gtr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":401}' # _entry.id 8GTR # _exptl.entry_id 8GTR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GTR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GTR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 M N N ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 84 A CYS 84 1_555 A SG CYS 242 A CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 66 B CYS 66 1_555 B SG CYS 261 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 84 B CYS 84 1_555 B SG CYS 242 B CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 C SG CYS 66 C CYS 66 1_555 C SG CYS 261 C CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 84 C CYS 84 1_555 C SG CYS 242 C CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 D SG CYS 66 D CYS 66 1_555 D SG CYS 261 D CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 D SG CYS 84 D CYS 84 1_555 D SG CYS 242 D CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 E SG CYS 66 E CYS 66 1_555 E SG CYS 261 E CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 E SG CYS 84 E CYS 84 1_555 E SG CYS 242 E CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 F SG CYS 66 F CYS 66 1_555 F SG CYS 261 F CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 F SG CYS 84 F CYS 84 1_555 F SG CYS 242 F CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 G SG CYS 66 G CYS 66 1_555 G SG CYS 261 G CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf14 G SG CYS 84 G CYS 84 1_555 G SG CYS 242 G CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 71 A ASN 71 1_555 H C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B ND2 ASN 71 B ASN 71 1_555 J C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 C ND2 ASN 71 C ASN 71 1_555 L C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 D ND2 ASN 71 D ASN 71 1_555 O C1 NAG . D NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 E ND2 ASN 71 E ASN 71 1_555 Q C1 NAG . E NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 F ND2 ASN 71 F ASN 71 1_555 S C1 NAG . F NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 G ND2 ASN 71 G ASN 71 1_555 U C1 NAG . G NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 305 n n C1 C6 PTY sing 306 n n C1 HC11 PTY sing 307 n n C1 HC12 PTY sing 308 n n C2 C3 PTY sing 309 n n C2 N1 PTY sing 310 n n C2 HC21 PTY sing 311 n n C2 HC22 PTY sing 312 n n C3 O11 PTY sing 313 n n C3 HC31 PTY sing 314 n n C3 HC32 PTY sing 315 n n O4 C30 PTY sing 316 n n C5 C6 PTY sing 317 n n C5 O14 PTY sing 318 n n C5 HC51 PTY sing 319 n n C5 HC52 PTY sing 320 n n C6 O7 PTY sing 321 n n C6 HC6 PTY sing 322 n n O7 C8 PTY sing 323 n n C8 O10 PTY doub 324 n n C8 C11 PTY sing 325 n n C11 C12 PTY sing 326 n n C11 H111 PTY sing 327 n n C11 H112 PTY sing 328 n n C12 C13 PTY sing 329 n n C12 H121 PTY sing 330 n n C12 H122 PTY sing 331 n n C13 C14 PTY sing 332 n n C13 H131 PTY sing 333 n n C13 H132 PTY sing 334 n n C14 C15 PTY sing 335 n n C14 H141 PTY sing 336 n n C14 H142 PTY sing 337 n n C15 C16 PTY sing 338 n n C15 H151 PTY sing 339 n n C15 H152 PTY sing 340 n n C16 C17 PTY sing 341 n n C16 H161 PTY sing 342 n n C16 H162 PTY sing 343 n n C17 C18 PTY sing 344 n n C17 H171 PTY sing 345 n n C17 H172 PTY sing 346 n n C18 C19 PTY sing 347 n n C18 H181 PTY sing 348 n n C18 H182 PTY sing 349 n n C19 C20 PTY sing 350 n n C19 H191 PTY sing 351 n n C19 H192 PTY sing 352 n n C20 C21 PTY sing 353 n n C20 H201 PTY sing 354 n n C20 H202 PTY sing 355 n n C21 C22 PTY sing 356 n n C21 H211 PTY sing 357 n n C21 H212 PTY sing 358 n n C22 C23 PTY sing 359 n n C22 H221 PTY sing 360 n n C22 H222 PTY sing 361 n n C23 C24 PTY sing 362 n n C23 H231 PTY sing 363 n n C23 H232 PTY sing 364 n n C24 C25 PTY sing 365 n n C24 H241 PTY sing 366 n n C24 H242 PTY sing 367 n n C25 C26 PTY sing 368 n n C25 H251 PTY sing 369 n n C25 H252 PTY sing 370 n n C26 C27 PTY sing 371 n n C26 H261 PTY sing 372 n n C26 H262 PTY sing 373 n n C27 C28 PTY sing 374 n n C27 H271 PTY sing 375 n n C27 H272 PTY sing 376 n n C28 C29 PTY sing 377 n n C28 H281 PTY sing 378 n n C28 H282 PTY sing 379 n n C29 H291 PTY sing 380 n n C29 H292 PTY sing 381 n n C29 H293 PTY sing 382 n n C30 C31 PTY sing 383 n n C30 O30 PTY doub 384 n n C31 C32 PTY sing 385 n n C31 H311 PTY sing 386 n n C31 H312 PTY sing 387 n n C32 C33 PTY sing 388 n n C32 H321 PTY sing 389 n n C32 H322 PTY sing 390 n n C33 C34 PTY sing 391 n n C33 H331 PTY sing 392 n n C33 H332 PTY sing 393 n n C34 C35 PTY sing 394 n n C34 H341 PTY sing 395 n n C34 H342 PTY sing 396 n n C35 C36 PTY sing 397 n n C35 H351 PTY sing 398 n n C35 H352 PTY sing 399 n n C36 C37 PTY sing 400 n n C36 H361 PTY sing 401 n n C36 H362 PTY sing 402 n n C37 C38 PTY sing 403 n n C37 H371 PTY sing 404 n n C37 H372 PTY sing 405 n n C38 C39 PTY sing 406 n n C38 H381 PTY sing 407 n n C38 H382 PTY sing 408 n n C39 C40 PTY sing 409 n n C39 H391 PTY sing 410 n n C39 H392 PTY sing 411 n n C40 C41 PTY sing 412 n n C40 H401 PTY sing 413 n n C40 H402 PTY sing 414 n n C41 C42 PTY sing 415 n n C41 H411 PTY sing 416 n n C41 H412 PTY sing 417 n n C42 C43 PTY sing 418 n n C42 H421 PTY sing 419 n n C42 H422 PTY sing 420 n n C43 C44 PTY sing 421 n n C43 H431 PTY sing 422 n n C43 H432 PTY sing 423 n n C44 H441 PTY sing 424 n n C44 H442 PTY sing 425 n n C44 H443 PTY sing 426 n n P1 O11 PTY sing 427 n n P1 O12 PTY sing 428 n n P1 O13 PTY doub 429 n n P1 O14 PTY sing 430 n n O12 H12O PTY sing 431 n n N1 HN11 PTY sing 432 n n N1 HN12 PTY sing 433 n n # _atom_sites.entry_id 8GTR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 NAG A 1 401 401 NAG NAG . I 3 PTY A 1 402 403 PTY PTY . J 2 NAG B 1 401 401 NAG NAG . K 3 PTY B 1 402 403 PTY PTY . L 2 NAG C 1 401 401 NAG NAG . M 3 PTY C 1 402 403 PTY PTY . N 3 PTY D 1 401 403 PTY PTY . O 2 NAG D 1 402 401 NAG NAG . P 3 PTY E 1 401 403 PTY PTY . Q 2 NAG E 1 402 401 NAG NAG . R 3 PTY F 1 401 403 PTY PTY . S 2 NAG F 1 402 401 NAG NAG . T 3 PTY G 1 401 403 PTY PTY . U 2 NAG G 1 402 401 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . N 3 216.458 220.986 161.188 1 46.72 ? C1 PTY 401 D 1 HETATM 2 C C2 PTY . . . N 3 217.321 220.456 155.022 1 46.72 ? C2 PTY 401 D 1 HETATM 3 C C3 PTY . . . N 3 216.405 220.487 156.244 1 46.72 ? C3 PTY 401 D 1 HETATM 4 O O4 PTY . . . N 3 215.961 219.865 161.864 1 46.72 ? O4 PTY 401 D 1 HETATM 5 C C5 PTY . . . N 3 215.006 222.817 160.31 1 46.72 ? C5 PTY 401 D 1 HETATM 6 C C6 PTY . . . N 3 215.61 222.199 161.569 1 46.72 ? C6 PTY 401 D 1 HETATM 7 O O7 PTY . . . N 3 216.405 223.151 162.215 1 46.72 ? O7 PTY 401 D 1 HETATM 8 C C8 PTY . . . N 3 216.958 222.719 163.426 1 46.72 ? C8 PTY 401 D 1 HETATM 9 O O10 PTY . . . N 3 218.135 222.671 163.554 1 46.72 ? O10 PTY 401 D 1 HETATM 10 C C11 PTY . . . N 3 216.051 222.311 164.583 1 46.72 ? C11 PTY 401 D 1 HETATM 11 C C12 PTY . . . N 3 216.774 221.427 165.596 1 46.72 ? C12 PTY 401 D 1 HETATM 12 C C13 PTY . . . N 3 216.053 220.101 165.83 1 46.72 ? C13 PTY 401 D 1 HETATM 13 C C14 PTY . . . N 3 214.815 220.263 166.708 1 46.72 ? C14 PTY 401 D 1 HETATM 14 C C15 PTY . . . N 3 215.156 220.297 168.196 1 46.72 ? C15 PTY 401 D 1 HETATM 15 C C16 PTY . . . N 3 214.451 219.191 168.979 1 46.72 ? C16 PTY 401 D 1 HETATM 16 C C17 PTY . . . N 3 214.543 219.407 170.488 1 46.72 ? C17 PTY 401 D 1 HETATM 17 C C18 PTY . . . N 3 214.058 218.196 171.279 1 46.72 ? C18 PTY 401 D 1 HETATM 18 C C19 PTY . . . N 3 213.634 218.57 172.698 1 46.72 ? C19 PTY 401 D 1 HETATM 19 C C20 PTY . . . N 3 213.471 217.35 173.601 1 46.72 ? C20 PTY 401 D 1 HETATM 20 C C21 PTY . . . N 3 214.147 217.538 174.957 1 46.72 ? C21 PTY 401 D 1 HETATM 21 C C30 PTY . . . N 3 216.158 218.655 161.188 1 46.72 ? C30 PTY 401 D 1 HETATM 22 C C31 PTY . . . N 3 215.324 217.429 161.556 1 46.72 ? C31 PTY 401 D 1 HETATM 23 O O30 PTY . . . N 3 216.97 218.579 160.329 1 46.72 ? O30 PTY 401 D 1 HETATM 24 C C32 PTY . . . N 3 215.641 216.901 162.954 1 46.72 ? C32 PTY 401 D 1 HETATM 25 C C33 PTY . . . N 3 215.037 215.52 163.2 1 46.72 ? C33 PTY 401 D 1 HETATM 26 C C34 PTY . . . N 3 215.188 215.07 164.651 1 46.72 ? C34 PTY 401 D 1 HETATM 27 C C35 PTY . . . N 3 214.477 216.008 165.623 1 46.72 ? C35 PTY 401 D 1 HETATM 28 C C36 PTY . . . N 3 213.162 215.427 166.137 1 46.72 ? C36 PTY 401 D 1 HETATM 29 C C37 PTY . . . N 3 213.38 214.297 167.14 1 46.72 ? C37 PTY 401 D 1 HETATM 30 C C38 PTY . . . N 3 213.347 214.788 168.585 1 46.72 ? C38 PTY 401 D 1 HETATM 31 C C39 PTY . . . N 3 213.008 213.67 169.569 1 46.72 ? C39 PTY 401 D 1 HETATM 32 C C40 PTY . . . N 3 213.842 213.744 170.845 1 46.72 ? C40 PTY 401 D 1 HETATM 33 C C41 PTY . . . N 3 213.477 212.643 171.837 1 46.72 ? C41 PTY 401 D 1 HETATM 34 C C42 PTY . . . N 3 214.669 212.215 172.69 1 46.72 ? C42 PTY 401 D 1 HETATM 35 C C43 PTY . . . N 3 214.307 212.091 174.167 1 46.72 ? C43 PTY 401 D 1 HETATM 36 C C44 PTY . . . N 3 213.253 211.014 174.414 1 46.72 ? C44 PTY 401 D 1 HETATM 37 P P1 PTY . . . N 3 215.101 222.175 157.771 1 46.72 ? P1 PTY 401 D 1 HETATM 38 O O11 PTY . . . N 3 216.252 221.818 156.647 1 46.72 ? O11 PTY 401 D 1 HETATM 39 O O12 PTY . . . N 3 214.165 221.002 157.925 1 46.72 -1 O12 PTY 401 D 1 HETATM 40 O O13 PTY . . . N 3 214.319 223.386 157.322 1 46.72 ? O13 PTY 401 D 1 HETATM 41 O O14 PTY . . . N 3 215.82 222.492 159.22 1 46.72 ? O14 PTY 401 D 1 HETATM 42 N N1 PTY . . . N 3 217.932 219.146 154.88 1 46.72 ? N1 PTY 401 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 42 #