data_8GTW # _model_server_result.job_id VPP6ImvKvP0LFi4nGZaDiw _model_server_result.datetime_utc '2024-11-21 08:52:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gtw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8GTW # _exptl.entry_id 8GTW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 541.35 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-4-(3,4-dichlorophenyl)-1-[(2-oxidanylidene-1H-quinolin-4-yl)carbonyl]-N-[3,3,3-tris(fluoranyl)propyl]piperazine-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.19 _cell.angle_gamma 90 _cell.entry_id 8GTW _cell.length_a 51.616 _cell.length_b 81.708 _cell.length_c 89.079 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 51.616 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C24 H21 Cl2 F3 N4 O3' _chem_comp.formula_weight 541.35 _chem_comp.id K9U _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-4-(3,4-dichlorophenyl)-1-[(2-oxidanylidene-1H-quinolin-4-yl)carbonyl]-N-[3,3,3-tris(fluoranyl)propyl]piperazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C15 K9U doub 173 n n C15 C16 K9U sing 174 n n C15 N3 K9U sing 175 n n C16 C12 K9U doub 176 n n N3 C14 K9U sing 177 n n C12 C11 K9U sing 178 n n C12 C13 K9U sing 179 n n CL2 C5 K9U sing 180 n n C14 C20 K9U doub 181 n y C14 C13 K9U sing 182 n y C11 O1 K9U doub 183 n n C11 N2 K9U sing 184 n n C20 C19 K9U sing 185 n y C13 C17 K9U doub 186 n y C7 C8 K9U sing 187 n n C7 N1 K9U sing 188 n n C6 C5 K9U doub 189 n y C6 C1 K9U sing 190 n y C5 C4 K9U sing 191 n y N2 C8 K9U sing 192 n n N2 C9 K9U sing 193 n n N1 C1 K9U sing 194 n n N1 C10 K9U sing 195 n n C1 C2 K9U doub 196 n y C10 C9 K9U sing 197 n n C19 C18 K9U doub 198 n y C4 CL1 K9U sing 199 n n C4 C3 K9U doub 200 n y C17 C18 K9U sing 201 n y C9 C21 K9U sing 202 n n C2 C3 K9U sing 203 n y C21 O3 K9U doub 204 n n C21 N4 K9U sing 205 n n N4 C22 K9U sing 206 n n C23 C22 K9U sing 207 n n C23 C24 K9U sing 208 n n F1 C24 K9U sing 209 n n C24 F2 K9U sing 210 n n C24 F3 K9U sing 211 n n N3 H1 K9U sing 212 n n C6 H2 K9U sing 213 n n C7 H3 K9U sing 214 n n C7 H4 K9U sing 215 n n C8 H5 K9U sing 216 n n C8 H6 K9U sing 217 n n C10 H7 K9U sing 218 n n C10 H8 K9U sing 219 n n C17 H9 K9U sing 220 n n C20 H10 K9U sing 221 n n C22 H11 K9U sing 222 n n C22 H12 K9U sing 223 n n C16 H13 K9U sing 224 n n C18 H14 K9U sing 225 n n C19 H15 K9U sing 226 n n C2 H16 K9U sing 227 n n C23 H17 K9U sing 228 n n C23 H18 K9U sing 229 n n C3 H19 K9U sing 230 n n C9 H20 K9U sing 231 n n N4 H21 K9U sing 232 n n # _atom_sites.entry_id 8GTW _atom_sites.fract_transf_matrix[1][1] 0.019374 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002444 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012239 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K9U A 1 401 401 K9U LIG . D 2 K9U B 1 401 401 K9U LIG . E 3 HOH A 1 501 64 HOH WAT . E 3 HOH A 2 502 104 HOH WAT . E 3 HOH A 3 503 145 HOH WAT . E 3 HOH A 4 504 32 HOH WAT . E 3 HOH A 5 505 120 HOH WAT . E 3 HOH A 6 506 28 HOH WAT . E 3 HOH A 7 507 160 HOH WAT . E 3 HOH A 8 508 6 HOH WAT . E 3 HOH A 9 509 86 HOH WAT . E 3 HOH A 10 510 39 HOH WAT . E 3 HOH A 11 511 105 HOH WAT . E 3 HOH A 12 512 176 HOH WAT . E 3 HOH A 13 513 157 HOH WAT . E 3 HOH A 14 514 129 HOH WAT . E 3 HOH A 15 515 24 HOH WAT . E 3 HOH A 16 516 75 HOH WAT . E 3 HOH A 17 517 11 HOH WAT . E 3 HOH A 18 518 9 HOH WAT . E 3 HOH A 19 519 99 HOH WAT . E 3 HOH A 20 520 78 HOH WAT . E 3 HOH A 21 521 54 HOH WAT . E 3 HOH A 22 522 127 HOH WAT . E 3 HOH A 23 523 122 HOH WAT . E 3 HOH A 24 524 169 HOH WAT . E 3 HOH A 25 525 68 HOH WAT . E 3 HOH A 26 526 31 HOH WAT . E 3 HOH A 27 527 7 HOH WAT . E 3 HOH A 28 528 12 HOH WAT . E 3 HOH A 29 529 38 HOH WAT . E 3 HOH A 30 530 41 HOH WAT . E 3 HOH A 31 531 107 HOH WAT . E 3 HOH A 32 532 88 HOH WAT . E 3 HOH A 33 533 74 HOH WAT . E 3 HOH A 34 534 72 HOH WAT . E 3 HOH A 35 535 73 HOH WAT . E 3 HOH A 36 536 96 HOH WAT . E 3 HOH A 37 537 111 HOH WAT . E 3 HOH A 38 538 67 HOH WAT . E 3 HOH A 39 539 185 HOH WAT . E 3 HOH A 40 540 5 HOH WAT . E 3 HOH A 41 541 132 HOH WAT . E 3 HOH A 42 542 4 HOH WAT . E 3 HOH A 43 543 69 HOH WAT . E 3 HOH A 44 544 81 HOH WAT . E 3 HOH A 45 545 44 HOH WAT . E 3 HOH A 46 546 18 HOH WAT . E 3 HOH A 47 547 34 HOH WAT . E 3 HOH A 48 548 133 HOH WAT . E 3 HOH A 49 549 92 HOH WAT . E 3 HOH A 50 550 94 HOH WAT . E 3 HOH A 51 551 112 HOH WAT . E 3 HOH A 52 552 113 HOH WAT . E 3 HOH A 53 553 82 HOH WAT . E 3 HOH A 54 554 22 HOH WAT . E 3 HOH A 55 555 136 HOH WAT . E 3 HOH A 56 556 128 HOH WAT . E 3 HOH A 57 557 119 HOH WAT . E 3 HOH A 58 558 168 HOH WAT . E 3 HOH A 59 559 109 HOH WAT . E 3 HOH A 60 560 20 HOH WAT . E 3 HOH A 61 561 187 HOH WAT . E 3 HOH A 62 562 42 HOH WAT . E 3 HOH A 63 563 70 HOH WAT . E 3 HOH A 64 564 10 HOH WAT . E 3 HOH A 65 565 182 HOH WAT . E 3 HOH A 66 566 55 HOH WAT . E 3 HOH A 67 567 151 HOH WAT . E 3 HOH A 68 568 13 HOH WAT . E 3 HOH A 69 569 52 HOH WAT . E 3 HOH A 70 570 186 HOH WAT . E 3 HOH A 71 571 62 HOH WAT . E 3 HOH A 72 572 50 HOH WAT . E 3 HOH A 73 573 26 HOH WAT . E 3 HOH A 74 574 90 HOH WAT . E 3 HOH A 75 575 155 HOH WAT . E 3 HOH A 76 576 158 HOH WAT . E 3 HOH A 77 577 177 HOH WAT . E 3 HOH A 78 578 138 HOH WAT . E 3 HOH A 79 579 43 HOH WAT . E 3 HOH A 80 580 114 HOH WAT . E 3 HOH A 81 581 137 HOH WAT . E 3 HOH A 82 582 172 HOH WAT . E 3 HOH A 83 583 110 HOH WAT . E 3 HOH A 84 584 135 HOH WAT . E 3 HOH A 85 585 97 HOH WAT . E 3 HOH A 86 586 181 HOH WAT . E 3 HOH A 87 587 115 HOH WAT . E 3 HOH A 88 588 161 HOH WAT . E 3 HOH A 89 589 184 HOH WAT . E 3 HOH A 90 590 124 HOH WAT . E 3 HOH A 91 591 131 HOH WAT . E 3 HOH A 92 592 103 HOH WAT . E 3 HOH A 93 593 102 HOH WAT . E 3 HOH A 94 594 150 HOH WAT . E 3 HOH A 95 595 179 HOH WAT . F 3 HOH B 1 501 15 HOH WAT . F 3 HOH B 2 502 125 HOH WAT . F 3 HOH B 3 503 180 HOH WAT . F 3 HOH B 4 504 116 HOH WAT . F 3 HOH B 5 505 134 HOH WAT . F 3 HOH B 6 506 149 HOH WAT . F 3 HOH B 7 507 35 HOH WAT . F 3 HOH B 8 508 121 HOH WAT . F 3 HOH B 9 509 29 HOH WAT . F 3 HOH B 10 510 171 HOH WAT . F 3 HOH B 11 511 87 HOH WAT . F 3 HOH B 12 512 80 HOH WAT . F 3 HOH B 13 513 156 HOH WAT . F 3 HOH B 14 514 84 HOH WAT . F 3 HOH B 15 515 48 HOH WAT . F 3 HOH B 16 516 77 HOH WAT . F 3 HOH B 17 517 146 HOH WAT . F 3 HOH B 18 518 36 HOH WAT . F 3 HOH B 19 519 25 HOH WAT . F 3 HOH B 20 520 141 HOH WAT . F 3 HOH B 21 521 130 HOH WAT . F 3 HOH B 22 522 101 HOH WAT . F 3 HOH B 23 523 139 HOH WAT . F 3 HOH B 24 524 8 HOH WAT . F 3 HOH B 25 525 85 HOH WAT . F 3 HOH B 26 526 143 HOH WAT . F 3 HOH B 27 527 165 HOH WAT . F 3 HOH B 28 528 58 HOH WAT . F 3 HOH B 29 529 47 HOH WAT . F 3 HOH B 30 530 46 HOH WAT . F 3 HOH B 31 531 91 HOH WAT . F 3 HOH B 32 532 2 HOH WAT . F 3 HOH B 33 533 140 HOH WAT . F 3 HOH B 34 534 108 HOH WAT . F 3 HOH B 35 535 163 HOH WAT . F 3 HOH B 36 536 30 HOH WAT . F 3 HOH B 37 537 49 HOH WAT . F 3 HOH B 38 538 45 HOH WAT . F 3 HOH B 39 539 65 HOH WAT . F 3 HOH B 40 540 53 HOH WAT . F 3 HOH B 41 541 3 HOH WAT . F 3 HOH B 42 542 63 HOH WAT . F 3 HOH B 43 543 183 HOH WAT . F 3 HOH B 44 544 66 HOH WAT . F 3 HOH B 45 545 153 HOH WAT . F 3 HOH B 46 546 1 HOH WAT . F 3 HOH B 47 547 27 HOH WAT . F 3 HOH B 48 548 37 HOH WAT . F 3 HOH B 49 549 166 HOH WAT . F 3 HOH B 50 550 93 HOH WAT . F 3 HOH B 51 551 76 HOH WAT . F 3 HOH B 52 552 106 HOH WAT . F 3 HOH B 53 553 23 HOH WAT . F 3 HOH B 54 554 19 HOH WAT . F 3 HOH B 55 555 144 HOH WAT . F 3 HOH B 56 556 51 HOH WAT . F 3 HOH B 57 557 148 HOH WAT . F 3 HOH B 58 558 170 HOH WAT . F 3 HOH B 59 559 95 HOH WAT . F 3 HOH B 60 560 40 HOH WAT . F 3 HOH B 61 561 60 HOH WAT . F 3 HOH B 62 562 100 HOH WAT . F 3 HOH B 63 563 57 HOH WAT . F 3 HOH B 64 564 501 HOH HOH . F 3 HOH B 65 565 147 HOH WAT . F 3 HOH B 66 566 188 HOH WAT . F 3 HOH B 67 567 83 HOH WAT . F 3 HOH B 68 568 21 HOH WAT . F 3 HOH B 69 569 178 HOH WAT . F 3 HOH B 70 570 117 HOH WAT . F 3 HOH B 71 571 14 HOH WAT . F 3 HOH B 72 572 33 HOH WAT . F 3 HOH B 73 573 56 HOH WAT . F 3 HOH B 74 574 118 HOH WAT . F 3 HOH B 75 575 98 HOH WAT . F 3 HOH B 76 576 59 HOH WAT . F 3 HOH B 77 577 17 HOH WAT . F 3 HOH B 78 578 162 HOH WAT . F 3 HOH B 79 579 16 HOH WAT . F 3 HOH B 80 580 126 HOH WAT . F 3 HOH B 81 581 167 HOH WAT . F 3 HOH B 82 582 152 HOH WAT . F 3 HOH B 83 583 159 HOH WAT . F 3 HOH B 84 584 123 HOH WAT . F 3 HOH B 85 585 173 HOH WAT . F 3 HOH B 86 586 189 HOH WAT . F 3 HOH B 87 587 142 HOH WAT . F 3 HOH B 88 588 174 HOH WAT . F 3 HOH B 89 589 79 HOH WAT . F 3 HOH B 90 590 164 HOH WAT . F 3 HOH B 91 591 154 HOH WAT . F 3 HOH B 92 592 175 HOH WAT . F 3 HOH B 93 593 89 HOH WAT . F 3 HOH B 94 594 71 HOH WAT . F 3 HOH B 95 595 61 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 K9U . . . D 2 -25.295 16.983 3.444 1 43.32 ? N1 K9U 401 B 1 HETATM 2 N N3 K9U . . . D 2 -30.867 13.279 6.38 1 36.34 ? N3 K9U 401 B 1 HETATM 3 C C4 K9U . . . D 2 -21.211 17.571 3.087 1 48.08 ? C4 K9U 401 B 1 HETATM 4 C C5 K9U . . . D 2 -21.709 16.614 3.96 1 50.91 ? C5 K9U 401 B 1 HETATM 5 C C6 K9U . . . D 2 -23.068 16.408 4.07 1 45.27 ? C6 K9U 401 B 1 HETATM 6 C C7 K9U . . . D 2 -25.829 15.803 4.143 1 40.15 ? C7 K9U 401 B 1 HETATM 7 C C8 K9U . . . D 2 -27.225 15.419 3.717 1 40.24 ? C8 K9U 401 B 1 HETATM 8 C C10 K9U . . . D 2 -26.229 18.084 3.176 1 44.14 ? C10 K9U 401 B 1 HETATM 9 C C13 K9U . . . D 2 -30.556 14.541 4.366 1 39.29 ? C13 K9U 401 B 1 HETATM 10 C C15 K9U . . . D 2 -30.176 14.158 7.146 1 35.88 ? C15 K9U 401 B 1 HETATM 11 C C17 K9U . . . D 2 -30.779 14.663 2.984 1 41.06 ? C17 K9U 401 B 1 HETATM 12 C C20 K9U . . . D 2 -31.818 12.452 4.323 1 39.93 ? C20 K9U 401 B 1 HETATM 13 C C21 K9U . . . D 2 -28.015 17.304 1.443 1 55.8 ? C21 K9U 401 B 1 HETATM 14 C C22 K9U . . . D 2 -28.044 19.35 0.02 1 69.62 ? C22 K9U 401 B 1 HETATM 15 C C24 K9U . . . D 2 -25.92 19.871 -1.222 1 81.45 ? C24 K9U 401 B 1 HETATM 16 C C1 K9U . . . D 2 -23.95 17.15 3.288 1 42.31 ? C1 K9U 401 B 1 HETATM 17 C C11 K9U . . . D 2 -29.256 16.712 4.484 1 40.01 ? C11 K9U 401 B 1 HETATM 18 C C12 K9U . . . D 2 -29.825 15.504 5.125 1 38.46 ? C12 K9U 401 B 1 HETATM 19 C C14 K9U . . . D 2 -31.085 13.415 5.025 1 38.75 ? C14 K9U 401 B 1 HETATM 20 C C16 K9U . . . D 2 -29.635 15.312 6.468 1 38.38 ? C16 K9U 401 B 1 HETATM 21 C C18 K9U . . . D 2 -31.5 13.719 2.309 1 41.84 ? C18 K9U 401 B 1 HETATM 22 C C19 K9U . . . D 2 -32.017 12.615 2.977 1 40.95 ? C19 K9U 401 B 1 HETATM 23 C C2 K9U . . . D 2 -23.443 18.132 2.433 1 43.68 ? C2 K9U 401 B 1 HETATM 24 C C23 K9U . . . D 2 -27.013 18.862 -0.975 1 75.95 ? C23 K9U 401 B 1 HETATM 25 C C3 K9U . . . D 2 -22.075 18.331 2.322 1 44.64 ? C3 K9U 401 B 1 HETATM 26 C C9 K9U . . . D 2 -27.677 17.655 2.895 1 47.34 ? C9 K9U 401 B 1 HETATM 27 F F1 K9U . . . D 2 -25.291 20.224 -0.101 1 82.57 ? F1 K9U 401 B 1 HETATM 28 F F2 K9U . . . D 2 -26.372 21 -1.765 1 82.63 ? F2 K9U 401 B 1 HETATM 29 F F3 K9U . . . D 2 -24.981 19.409 -2.046 1 82.55 ? F3 K9U 401 B 1 HETATM 30 N N2 K9U . . . D 2 -28.09 16.591 3.817 1 42.22 ? N2 K9U 401 B 1 HETATM 31 N N4 K9U . . . D 2 -28.654 18.237 0.735 1 63.99 ? N4 K9U 401 B 1 HETATM 32 O O1 K9U . . . D 2 -29.824 17.796 4.58 1 38.6 ? O1 K9U 401 B 1 HETATM 33 O O2 K9U . . . D 2 -30.026 13.947 8.368 1 36.79 ? O2 K9U 401 B 1 HETATM 34 O O3 K9U . . . D 2 -27.766 16.198 0.957 1 57.45 ? O3 K9U 401 B 1 HETATM 35 CL CL1 K9U . . . D 2 -19.506 17.838 2.944 1 48.63 ? CL1 K9U 401 B 1 HETATM 36 CL CL2 K9U . . . D 2 -20.648 15.647 4.925 1 60.12 ? CL2 K9U 401 B 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #