data_8GUT # _model_server_result.job_id CQlROXNEbejOTJUsZ8YXgw _model_server_result.datetime_utc '2024-10-11 00:26:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gut # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 8GUT # _exptl.entry_id 8GUT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 454.537 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[[4-[5-fluoranyl-6-[(oxan-4-ylamino)methyl]pyridin-2-yl]phenyl]methyl]-3-(2-methylpropyl)imidazolidine-2,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GUT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GUT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 154 R CYS 174 1_555 D SG CYS 159 R CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 E SG CYS 22 S CYS 22 1_555 E SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 E SG CYS 159 S CYS 147 1_555 E SG CYS 229 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C25 H31 F N4 O3' _chem_comp.formula_weight 454.537 _chem_comp.id KO8 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[[4-[5-fluoranyl-6-[(oxan-4-ylamino)methyl]pyridin-2-yl]phenyl]methyl]-3-(2-methylpropyl)imidazolidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8GUT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id KO8 _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id KO8 _pdbx_nonpoly_scheme.auth_mon_id LEI _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 KO8 . . . F 6 131.431 122.844 168.13 1 76.9 ? C8 KO8 401 R 1 HETATM 2 C C9 KO8 . . . F 6 127.136 118.62 172.506 1 76.9 ? C9 KO8 401 R 1 HETATM 3 C C1 KO8 . . . F 6 129.267 122.832 171.234 1 76.9 ? C1 KO8 401 R 1 HETATM 4 N N1 KO8 . . . F 6 127.196 119.994 172.047 1 76.9 ? N1 KO8 401 R 1 HETATM 5 O O1 KO8 . . . F 6 126.043 121.237 170.521 1 76.9 ? O1 KO8 401 R 1 HETATM 6 C C2 KO8 . . . F 6 128.991 121.485 171.37 1 76.9 ? C2 KO8 401 R 1 HETATM 7 N N2 KO8 . . . F 6 125.533 119.071 170.854 1 76.9 ? N2 KO8 401 R 1 HETATM 8 O O2 KO8 . . . F 6 125.6 116.974 171.706 1 76.9 ? O2 KO8 401 R 1 HETATM 9 C C3 KO8 . . . F 6 129.499 120.585 170.456 1 76.9 ? C3 KO8 401 R 1 HETATM 10 N N3 KO8 . . . F 6 132.036 121.934 167.371 1 76.9 ? N3 KO8 401 R 1 HETATM 11 O O3 KO8 . . . F 6 135.492 117.63 168.375 1 76.9 ? O3 KO8 401 R 1 HETATM 12 C C4 KO8 . . . F 6 130.285 121.016 169.408 1 76.9 ? C4 KO8 401 R 1 HETATM 13 N N4 KO8 . . . F 6 133.047 119.92 165.957 1 76.9 ? N4 KO8 401 R 1 HETATM 14 C C5 KO8 . . . F 6 130.56 122.361 169.276 1 76.9 ? C5 KO8 401 R 1 HETATM 15 C C6 KO8 . . . F 6 130.063 123.264 170.186 1 76.9 ? C6 KO8 401 R 1 HETATM 16 C C7 KO8 . . . F 6 128.122 120.999 172.526 1 76.9 ? C7 KO8 401 R 1 HETATM 17 C C10 KO8 . . . F 6 126.004 118.084 171.662 1 76.9 ? C10 KO8 401 R 1 HETATM 18 C C11 KO8 . . . F 6 126.232 120.208 171.077 1 76.9 ? C11 KO8 401 R 1 HETATM 19 C C12 KO8 . . . F 6 124.44 118.972 169.901 1 76.9 ? C12 KO8 401 R 1 HETATM 20 C C13 KO8 . . . F 6 124.678 117.88 168.864 1 76.9 ? C13 KO8 401 R 1 HETATM 21 C C14 KO8 . . . F 6 123.392 117.078 168.69 1 76.9 ? C14 KO8 401 R 1 HETATM 22 C C15 KO8 . . . F 6 125.07 118.521 167.536 1 76.9 ? C15 KO8 401 R 1 HETATM 23 C C16 KO8 . . . F 6 131.603 124.188 167.89 1 76.9 ? C16 KO8 401 R 1 HETATM 24 C C17 KO8 . . . F 6 132.399 124.582 166.857 1 76.9 ? C17 KO8 401 R 1 HETATM 25 C C18 KO8 . . . F 6 133.014 123.641 166.078 1 76.9 ? C18 KO8 401 R 1 HETATM 26 C C19 KO8 . . . F 6 132.819 122.296 166.351 1 76.9 ? C19 KO8 401 R 1 HETATM 27 C C20 KO8 . . . F 6 133.494 121.223 165.505 1 76.9 ? C20 KO8 401 R 1 HETATM 28 C C21 KO8 . . . F 6 134.177 119.088 166.334 1 76.9 ? C21 KO8 401 R 1 HETATM 29 C C22 KO8 . . . F 6 134.985 119.783 167.416 1 76.9 ? C22 KO8 401 R 1 HETATM 30 C C23 KO8 . . . F 6 136.059 118.806 167.879 1 76.9 ? C23 KO8 401 R 1 HETATM 31 C C24 KO8 . . . F 6 134.777 116.937 167.394 1 76.9 ? C24 KO8 401 R 1 HETATM 32 C C25 KO8 . . . F 6 133.617 117.782 166.885 1 76.9 ? C25 KO8 401 R 1 HETATM 33 F F1 KO8 . . . F 6 133.812 124.011 165.039 1 76.9 ? F1 KO8 401 R 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #