data_8GUT
#
_model_server_result.job_id            wtvBpW6qXtqtXj4Umfnq6g 
_model_server_result.datetime_utc      '2025-08-30 23:40:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gut 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    8GUT 
#
_exptl.entry_id    8GUT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              454.537 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[[4-[5-fluoranyl-6-[(oxan-4-ylamino)methyl]pyridin-2-yl]phenyl]methyl]-3-(2-methylpropyl)imidazolidine-2,4-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GUT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GUT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 154 R CYS 174 1_555 D SG CYS 159 R CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 E SG CYS 22 S CYS 22 1_555 E SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 E SG CYS 159 S CYS 147 1_555 E SG CYS 229 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C25 H31 F N4 O3' 
_chem_comp.formula_weight    454.537 
_chem_comp.id                KO8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[[4-[5-fluoranyl-6-[(oxan-4-ylamino)methyl]pyridin-2-yl]phenyl]methyl]-3-(2-methylpropyl)imidazolidine-2,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F1 C18 KO8 sing 171 n n 
C20 N4 KO8 sing 172 n n 
C20 C19 KO8 sing 173 n n 
N4 C21 KO8 sing 174 n n 
C18 C19 KO8 doub 175 n y 
C18 C17 KO8 sing 176 n y 
C21 C25 KO8 sing 177 n n 
C21 C22 KO8 sing 178 n n 
C19 N3 KO8 sing 179 n y 
C17 C16 KO8 doub 180 n y 
C25 C24 KO8 sing 181 n n 
N3 C8 KO8 doub 182 n y 
C24 O3 KO8 sing 183 n n 
C22 C23 KO8 sing 184 n n 
C15 C13 KO8 sing 185 n n 
C23 O3 KO8 sing 186 n n 
C16 C8 KO8 sing 187 n y 
C8 C5 KO8 sing 188 n n 
C14 C13 KO8 sing 189 n n 
C13 C12 KO8 sing 190 n n 
C5 C4 KO8 doub 191 n y 
C5 C6 KO8 sing 192 n y 
C4 C3 KO8 sing 193 n y 
C12 N2 KO8 sing 194 n n 
C6 C1 KO8 doub 195 n y 
C3 C2 KO8 doub 196 n y 
O1 C11 KO8 doub 197 n n 
N2 C11 KO8 sing 198 n n 
N2 C10 KO8 sing 199 n n 
C11 N1 KO8 sing 200 n n 
C1 C2 KO8 sing 201 n y 
C2 C7 KO8 sing 202 n n 
C10 O2 KO8 doub 203 n n 
C10 C9 KO8 sing 204 n n 
N1 C9 KO8 sing 205 n n 
N1 C7 KO8 sing 206 n n 
C9 H1 KO8 sing 207 n n 
C9 H2 KO8 sing 208 n n 
C1 H3 KO8 sing 209 n n 
C3 H4 KO8 sing 210 n n 
C4 H5 KO8 sing 211 n n 
N4 H6 KO8 sing 212 n n 
C6 H8 KO8 sing 213 n n 
C7 H9 KO8 sing 214 n n 
C7 H10 KO8 sing 215 n n 
C12 H11 KO8 sing 216 n n 
C12 H12 KO8 sing 217 n n 
C13 H13 KO8 sing 218 n n 
C14 H14 KO8 sing 219 n n 
C14 H15 KO8 sing 220 n n 
C14 H16 KO8 sing 221 n n 
C15 H17 KO8 sing 222 n n 
C15 H18 KO8 sing 223 n n 
C15 H19 KO8 sing 224 n n 
C16 H20 KO8 sing 225 n n 
C17 H21 KO8 sing 226 n n 
C20 H22 KO8 sing 227 n n 
C20 H23 KO8 sing 228 n n 
C21 H24 KO8 sing 229 n n 
C22 H25 KO8 sing 230 n n 
C22 H26 KO8 sing 231 n n 
C23 H27 KO8 sing 232 n n 
C23 H28 KO8 sing 233 n n 
C24 H29 KO8 sing 234 n n 
C24 H30 KO8 sing 235 n n 
C25 H31 KO8 sing 236 n n 
C25 H32 KO8 sing 237 n n 
#
_atom_sites.entry_id                     8GUT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           KO8 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     401 
_pdbx_nonpoly_scheme.pdb_mon_id       KO8 
_pdbx_nonpoly_scheme.auth_mon_id      LEI 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 KO8 . . . F 6 131.431 122.844 168.13 1 76.9 ? C8 KO8 401 R 1 
HETATM 2 C C9 KO8 . . . F 6 127.136 118.62 172.506 1 76.9 ? C9 KO8 401 R 1 
HETATM 3 C C1 KO8 . . . F 6 129.267 122.832 171.234 1 76.9 ? C1 KO8 401 R 1 
HETATM 4 N N1 KO8 . . . F 6 127.196 119.994 172.047 1 76.9 ? N1 KO8 401 R 1 
HETATM 5 O O1 KO8 . . . F 6 126.043 121.237 170.521 1 76.9 ? O1 KO8 401 R 1 
HETATM 6 C C2 KO8 . . . F 6 128.991 121.485 171.37 1 76.9 ? C2 KO8 401 R 1 
HETATM 7 N N2 KO8 . . . F 6 125.533 119.071 170.854 1 76.9 ? N2 KO8 401 R 1 
HETATM 8 O O2 KO8 . . . F 6 125.6 116.974 171.706 1 76.9 ? O2 KO8 401 R 1 
HETATM 9 C C3 KO8 . . . F 6 129.499 120.585 170.456 1 76.9 ? C3 KO8 401 R 1 
HETATM 10 N N3 KO8 . . . F 6 132.036 121.934 167.371 1 76.9 ? N3 KO8 401 R 1 
HETATM 11 O O3 KO8 . . . F 6 135.492 117.63 168.375 1 76.9 ? O3 KO8 401 R 1 
HETATM 12 C C4 KO8 . . . F 6 130.285 121.016 169.408 1 76.9 ? C4 KO8 401 R 1 
HETATM 13 N N4 KO8 . . . F 6 133.047 119.92 165.957 1 76.9 ? N4 KO8 401 R 1 
HETATM 14 C C5 KO8 . . . F 6 130.56 122.361 169.276 1 76.9 ? C5 KO8 401 R 1 
HETATM 15 C C6 KO8 . . . F 6 130.063 123.264 170.186 1 76.9 ? C6 KO8 401 R 1 
HETATM 16 C C7 KO8 . . . F 6 128.122 120.999 172.526 1 76.9 ? C7 KO8 401 R 1 
HETATM 17 C C10 KO8 . . . F 6 126.004 118.084 171.662 1 76.9 ? C10 KO8 401 R 1 
HETATM 18 C C11 KO8 . . . F 6 126.232 120.208 171.077 1 76.9 ? C11 KO8 401 R 1 
HETATM 19 C C12 KO8 . . . F 6 124.44 118.972 169.901 1 76.9 ? C12 KO8 401 R 1 
HETATM 20 C C13 KO8 . . . F 6 124.678 117.88 168.864 1 76.9 ? C13 KO8 401 R 1 
HETATM 21 C C14 KO8 . . . F 6 123.392 117.078 168.69 1 76.9 ? C14 KO8 401 R 1 
HETATM 22 C C15 KO8 . . . F 6 125.07 118.521 167.536 1 76.9 ? C15 KO8 401 R 1 
HETATM 23 C C16 KO8 . . . F 6 131.603 124.188 167.89 1 76.9 ? C16 KO8 401 R 1 
HETATM 24 C C17 KO8 . . . F 6 132.399 124.582 166.857 1 76.9 ? C17 KO8 401 R 1 
HETATM 25 C C18 KO8 . . . F 6 133.014 123.641 166.078 1 76.9 ? C18 KO8 401 R 1 
HETATM 26 C C19 KO8 . . . F 6 132.819 122.296 166.351 1 76.9 ? C19 KO8 401 R 1 
HETATM 27 C C20 KO8 . . . F 6 133.494 121.223 165.505 1 76.9 ? C20 KO8 401 R 1 
HETATM 28 C C21 KO8 . . . F 6 134.177 119.088 166.334 1 76.9 ? C21 KO8 401 R 1 
HETATM 29 C C22 KO8 . . . F 6 134.985 119.783 167.416 1 76.9 ? C22 KO8 401 R 1 
HETATM 30 C C23 KO8 . . . F 6 136.059 118.806 167.879 1 76.9 ? C23 KO8 401 R 1 
HETATM 31 C C24 KO8 . . . F 6 134.777 116.937 167.394 1 76.9 ? C24 KO8 401 R 1 
HETATM 32 C C25 KO8 . . . F 6 133.617 117.782 166.885 1 76.9 ? C25 KO8 401 R 1 
HETATM 33 F F1 KO8 . . . F 6 133.812 124.011 165.039 1 76.9 ? F1 KO8 401 R 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           399 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           33 
#