data_8GV3 # _model_server_result.job_id 0pme-GLfDbZ_Eb1Rk3w2hQ _model_server_result.datetime_utc '2024-10-19 17:34:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gv3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 8GV3 # _exptl.entry_id 8GV3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 499.584 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4P)-4-{2-[4-(1H-imidazol-1-yl)phenyl]-5-[3-oxo-3-(2-oxo-1,3-thiazolidin-3-yl)propyl]-1H-pyrrol-1-yl}-3-methylbenzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GV3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GV3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 45 A CYS 44 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 A NE2 HIS 67 A HIS 66 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc3 A SG CYS 97 A CYS 96 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc4 A SG CYS 100 A CYS 99 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 A SG CYS 103 A CYS 102 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc6 A SG CYS 111 A CYS 110 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc7 A SG CYS 174 A CYS 173 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc8 D ZN ZN . A ZN 402 1_555 F N25 WKZ . A WKZ 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc9 B SG CYS 45 B CYS 44 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc10 B NE2 HIS 67 B HIS 66 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc11 B SG CYS 97 B CYS 96 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc12 B SG CYS 100 B CYS 99 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc13 B SG CYS 103 B CYS 102 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc14 B SG CYS 111 B CYS 110 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc15 B SG CYS 174 B CYS 173 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc16 H ZN ZN . B ZN 402 1_555 J N25 WKZ . B WKZ 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? # _chem_comp.formula 'C27 H25 N5 O3 S' _chem_comp.formula_weight 499.584 _chem_comp.id WKZ _chem_comp.mon_nstd_flag . _chem_comp.name (4P)-4-{2-[4-(1H-imidazol-1-yl)phenyl]-5-[3-oxo-3-(2-oxo-1,3-thiazolidin-3-yl)propyl]-1H-pyrrol-1-yl}-3-methylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 C32 WKZ sing 449 n n C33 S34 WKZ sing 450 n n C32 N31 WKZ sing 451 n n S34 C35 WKZ sing 452 n n N31 C35 WKZ sing 453 n n N31 C29 WKZ sing 454 n n C35 O36 WKZ doub 455 n n O30 C29 WKZ doub 456 n n C29 C28 WKZ sing 457 n n C17 C18 WKZ doub 458 n y C17 C16 WKZ sing 459 n y C28 C27 WKZ sing 460 n n C13 C14 WKZ sing 461 n y C13 C12 WKZ doub 462 n y C14 C15 WKZ doub 463 n y C18 C19 WKZ sing 464 n y C12 C27 WKZ sing 465 n n C12 N11 WKZ sing 466 n y C15 C16 WKZ sing 467 n n C15 N11 WKZ sing 468 n y C04 C05 WKZ doub 469 n y C04 C03 WKZ sing 470 n y C16 C21 WKZ doub 471 n y C26 N25 WKZ doub 472 n y C26 N22 WKZ sing 473 n y N11 C03 WKZ sing 474 n n C19 N22 WKZ sing 475 n n C19 C20 WKZ doub 476 n y N25 C24 WKZ sing 477 n y C05 C06 WKZ sing 478 n y N22 C23 WKZ sing 479 n y C03 C02 WKZ doub 480 n y C21 C20 WKZ sing 481 n y C24 C23 WKZ doub 482 n y N10 C08 WKZ sing 483 n n C06 C08 WKZ sing 484 n n C06 C07 WKZ doub 485 n y C02 C07 WKZ sing 486 n y C02 C01 WKZ sing 487 n n C08 O09 WKZ doub 488 n n C01 H1 WKZ sing 489 n n C01 H2 WKZ sing 490 n n C01 H3 WKZ sing 491 n n C04 H4 WKZ sing 492 n n C05 H5 WKZ sing 493 n n C07 H6 WKZ sing 494 n n C13 H7 WKZ sing 495 n n C14 H8 WKZ sing 496 n n C17 H9 WKZ sing 497 n n C18 H10 WKZ sing 498 n n C20 H11 WKZ sing 499 n n C21 H12 WKZ sing 500 n n C23 H13 WKZ sing 501 n n C24 H14 WKZ sing 502 n n C26 H15 WKZ sing 503 n n C27 H16 WKZ sing 504 n n C27 H17 WKZ sing 505 n n C28 H18 WKZ sing 506 n n C28 H19 WKZ sing 507 n n C32 H20 WKZ sing 508 n n C32 H21 WKZ sing 509 n n C33 H22 WKZ sing 510 n n C33 H23 WKZ sing 511 n n N10 H24 WKZ sing 512 n n N10 H25 WKZ sing 513 n n # _atom_sites.entry_id 8GV3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 400 ZN ZN . D 2 ZN A 1 402 401 ZN ZN . E 3 NAD A 1 403 500 NAD NAD . F 4 WKZ A 1 404 501 WKZ NY1 . G 2 ZN B 1 401 400 ZN ZN . H 2 ZN B 1 402 401 ZN ZN . I 3 NAD B 1 403 500 NAD NAD . J 4 WKZ B 1 404 501 WKZ NY1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 WKZ . . . F 4 117.7 96.751 103.698 1 68.54 ? C01 WKZ 404 A 1 HETATM 2 C C02 WKZ . . . F 4 118.925 97.03 102.829 1 68.54 ? C02 WKZ 404 A 1 HETATM 3 C C03 WKZ . . . F 4 118.797 97.392 101.495 1 68.54 ? C03 WKZ 404 A 1 HETATM 4 C C04 WKZ . . . F 4 119.927 97.642 100.74 1 68.54 ? C04 WKZ 404 A 1 HETATM 5 C C05 WKZ . . . F 4 121.183 97.528 101.303 1 68.54 ? C05 WKZ 404 A 1 HETATM 6 C C06 WKZ . . . F 4 121.312 97.169 102.631 1 68.54 ? C06 WKZ 404 A 1 HETATM 7 C C07 WKZ . . . F 4 120.186 96.92 103.392 1 68.54 ? C07 WKZ 404 A 1 HETATM 8 C C08 WKZ . . . F 4 122.699 97.033 103.252 1 68.54 ? C08 WKZ 404 A 1 HETATM 9 C C12 WKZ . . . F 4 116.732 96.49 100.462 1 68.54 ? C12 WKZ 404 A 1 HETATM 10 C C13 WKZ . . . F 4 115.598 97.018 99.891 1 68.54 ? C13 WKZ 404 A 1 HETATM 11 C C14 WKZ . . . F 4 115.707 98.374 99.924 1 68.54 ? C14 WKZ 404 A 1 HETATM 12 C C15 WKZ . . . F 4 116.905 98.679 100.524 1 68.54 ? C15 WKZ 404 A 1 HETATM 13 C C16 WKZ . . . F 4 117.445 100.089 100.769 1 68.54 ? C16 WKZ 404 A 1 HETATM 14 C C17 WKZ . . . F 4 117.346 101.036 99.767 1 68.54 ? C17 WKZ 404 A 1 HETATM 15 C C18 WKZ . . . F 4 117.832 102.313 99.979 1 68.54 ? C18 WKZ 404 A 1 HETATM 16 C C19 WKZ . . . F 4 118.416 102.64 101.192 1 68.54 ? C19 WKZ 404 A 1 HETATM 17 C C20 WKZ . . . F 4 118.516 101.694 102.196 1 68.54 ? C20 WKZ 404 A 1 HETATM 18 C C21 WKZ . . . F 4 118.028 100.42 101.982 1 68.54 ? C21 WKZ 404 A 1 HETATM 19 C C23 WKZ . . . F 4 118.456 104.835 102.286 1 68.54 ? C23 WKZ 404 A 1 HETATM 20 C C24 WKZ . . . F 4 119.207 105.965 102.199 1 68.54 ? C24 WKZ 404 A 1 HETATM 21 C C26 WKZ . . . F 4 119.959 104.539 100.787 1 68.54 ? C26 WKZ 404 A 1 HETATM 22 C C27 WKZ . . . F 4 117.035 94.999 100.652 1 68.54 ? C27 WKZ 404 A 1 HETATM 23 C C28 WKZ . . . F 4 118.235 94.501 99.845 1 68.54 ? C28 WKZ 404 A 1 HETATM 24 C C29 WKZ . . . F 4 117.966 94.531 98.346 1 68.54 ? C29 WKZ 404 A 1 HETATM 25 C C32 WKZ . . . F 4 118.853 94.928 95.802 1 68.54 ? C32 WKZ 404 A 1 HETATM 26 C C33 WKZ . . . F 4 120.347 94.837 95.182 1 68.54 ? C33 WKZ 404 A 1 HETATM 27 C C35 WKZ . . . F 4 120.518 95.229 97.691 1 68.54 ? C35 WKZ 404 A 1 HETATM 28 N N10 WKZ . . . F 4 123.879 97.297 102.448 1 68.54 ? N10 WKZ 404 A 1 HETATM 29 N N11 WKZ . . . F 4 117.5 97.521 100.853 1 68.54 ? N11 WKZ 404 A 1 HETATM 30 N N22 WKZ . . . F 4 118.926 103.977 101.42 1 68.54 ? N22 WKZ 404 A 1 HETATM 31 N N25 WKZ . . . F 4 120.126 105.774 101.277 1 68.54 ? N25 WKZ 404 A 1 HETATM 32 N N31 WKZ . . . F 4 119.018 94.864 97.396 1 68.54 ? N31 WKZ 404 A 1 HETATM 33 O O09 WKZ . . . F 4 122.809 96.696 104.384 1 68.54 ? O09 WKZ 404 A 1 HETATM 34 O O30 WKZ . . . F 4 116.88 94.276 97.961 1 68.54 ? O30 WKZ 404 A 1 HETATM 35 O O36 WKZ . . . F 4 120.954 95.846 98.6 1 68.54 ? O36 WKZ 404 A 1 HETATM 36 S S34 WKZ . . . F 4 121.352 94.603 96.488 1 68.54 ? S34 WKZ 404 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #