data_8GVJ # _model_server_result.job_id 3nEDuXlTzvgpdjT6cXZGFA _model_server_result.datetime_utc '2024-11-22 00:39:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gvj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1401}' # _entry.id 8GVJ # _exptl.entry_id 8GVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 558.554 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1^4Z,5^2E)-6^3-(trifluoromethyl)-5^1,5^6-dihydro-1^1H-8-aza-2(3,6)-quinolina-5(1,3)-pyridazina-1(4,1)-pyrazola-6(1,4)-benzenacyclododecaphane-5^6,7-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GVJ _cell.length_a 66.078 _cell.length_b 66.078 _cell.length_c 187.302 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H25 F3 N6 O2' _chem_comp.formula_weight 558.554 _chem_comp.id KGL _chem_comp.mon_nstd_flag . _chem_comp.name (1^4Z,5^2E)-6^3-(trifluoromethyl)-5^1,5^6-dihydro-1^1H-8-aza-2(3,6)-quinolina-5(1,3)-pyridazina-1(4,1)-pyrazola-6(1,4)-benzenacyclododecaphane-5^6,7-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N04 C03 KGL doub 173 n y N04 N05 KGL sing 174 n y C06 N05 KGL sing 175 n n C06 C07 KGL sing 176 n n C03 C02 KGL sing 177 n y N05 C01 KGL sing 178 n y C08 C07 KGL sing 179 n n C08 C09 KGL sing 180 n n C02 C01 KGL doub 181 n y C02 C36 KGL sing 182 n n C09 N10 KGL sing 183 n n C35 C36 KGL sing 184 n y C35 N34 KGL doub 185 n y C36 C37 KGL doub 186 n y O13 C11 KGL doub 187 n n N10 C11 KGL sing 188 n n N34 C31 KGL sing 189 n y C37 C32 KGL sing 190 n y C11 C12 KGL sing 191 n n C31 C32 KGL doub 192 n y C31 C30 KGL sing 193 n y C32 C33 KGL sing 194 n y C18 C12 KGL doub 195 n y C18 C17 KGL sing 196 n y C12 C14 KGL sing 197 n y C30 C29 KGL doub 198 n y C33 C28 KGL doub 199 n y C17 C16 KGL doub 200 n y F41 C38 KGL sing 201 n n C29 C28 KGL sing 202 n y C14 C38 KGL sing 203 n n C14 C15 KGL doub 204 n y C28 C27 KGL sing 205 n n F39 C38 KGL sing 206 n n C38 F40 KGL sing 207 n n C16 C15 KGL sing 208 n y C16 C19 KGL sing 209 n n C27 C26 KGL sing 210 n n N24 C19 KGL doub 211 n n N24 N23 KGL sing 212 n n C26 N23 KGL sing 213 n n C19 C20 KGL sing 214 n n N23 C22 KGL sing 215 n n C20 C21 KGL doub 216 n n C22 C21 KGL sing 217 n n C22 O25 KGL doub 218 n n C15 H1 KGL sing 219 n n C17 H2 KGL sing 220 n n C20 H3 KGL sing 221 n n C21 H4 KGL sing 222 n n C26 H5 KGL sing 223 n n C26 H6 KGL sing 224 n n C01 H7 KGL sing 225 n n C03 H8 KGL sing 226 n n C06 H9 KGL sing 227 n n C06 H10 KGL sing 228 n n C07 H11 KGL sing 229 n n C07 H12 KGL sing 230 n n C08 H13 KGL sing 231 n n C08 H14 KGL sing 232 n n C09 H15 KGL sing 233 n n C09 H16 KGL sing 234 n n C18 H17 KGL sing 235 n n C27 H18 KGL sing 236 n n C27 H19 KGL sing 237 n n C29 H20 KGL sing 238 n n C30 H21 KGL sing 239 n n C33 H22 KGL sing 240 n n C35 H23 KGL sing 241 n n C37 H24 KGL sing 242 n n N10 H25 KGL sing 243 n n # _atom_sites.entry_id 8GVJ _atom_sites.fract_transf_matrix[1][1] 0.015134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KGL A 1 1401 1401 KGL LIG . C 3 HOH A 1 1501 15 HOH HOH . C 3 HOH A 2 1502 7 HOH HOH . C 3 HOH A 3 1503 19 HOH HOH . C 3 HOH A 4 1504 21 HOH HOH . C 3 HOH A 5 1505 18 HOH HOH . C 3 HOH A 6 1506 1 HOH HOH . C 3 HOH A 7 1507 5 HOH HOH . C 3 HOH A 8 1508 10 HOH HOH . C 3 HOH A 9 1509 29 HOH HOH . C 3 HOH A 10 1510 23 HOH HOH . C 3 HOH A 11 1511 14 HOH HOH . C 3 HOH A 12 1512 32 HOH HOH . C 3 HOH A 13 1513 8 HOH HOH . C 3 HOH A 14 1514 4 HOH HOH . C 3 HOH A 15 1515 2 HOH HOH . C 3 HOH A 16 1516 9 HOH HOH . C 3 HOH A 17 1517 3 HOH HOH . C 3 HOH A 18 1518 24 HOH HOH . C 3 HOH A 19 1519 6 HOH HOH . C 3 HOH A 20 1520 16 HOH HOH . C 3 HOH A 21 1521 13 HOH HOH . C 3 HOH A 22 1522 28 HOH HOH . C 3 HOH A 23 1523 17 HOH HOH . C 3 HOH A 24 1524 27 HOH HOH . C 3 HOH A 25 1525 22 HOH HOH . C 3 HOH A 26 1526 20 HOH HOH . C 3 HOH A 27 1527 31 HOH HOH . C 3 HOH A 28 1528 11 HOH HOH . C 3 HOH A 29 1529 25 HOH HOH . C 3 HOH A 30 1530 26 HOH HOH . C 3 HOH A 31 1531 12 HOH HOH . C 3 HOH A 32 1532 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 KGL . . . B 2 -13.928 6.161 -28.598 1 48.43 ? C15 KGL 1401 A 1 HETATM 2 C C17 KGL . . . B 2 -14.6 4.535 -30.241 1 47.89 ? C17 KGL 1401 A 1 HETATM 3 C C20 KGL . . . B 2 -14.55 3.96 -26.525 1 44.44 ? C20 KGL 1401 A 1 HETATM 4 C C21 KGL . . . B 2 -14.538 2.777 -25.731 1 43.71 ? C21 KGL 1401 A 1 HETATM 5 C C22 KGL . . . B 2 -14.3 1.529 -26.339 1 46.4 ? C22 KGL 1401 A 1 HETATM 6 C C26 KGL . . . B 2 -13.817 0.232 -28.365 1 44.58 ? C26 KGL 1401 A 1 HETATM 7 C C28 KGL . . . B 2 -16.075 -0.443 -29.537 1 56.34 ? C28 KGL 1401 A 1 HETATM 8 C C01 KGL . . . B 2 -17.47 4.703 -33.897 1 49.25 ? C01 KGL 1401 A 1 HETATM 9 C C02 KGL . . . B 2 -18.259 3.504 -33.912 1 49.97 ? C02 KGL 1401 A 1 HETATM 10 C C03 KGL . . . B 2 -19.242 3.701 -34.904 1 46.22 ? C03 KGL 1401 A 1 HETATM 11 C C06 KGL . . . B 2 -17.433 6.778 -35.175 1 60.64 ? C06 KGL 1401 A 1 HETATM 12 C C07 KGL . . . B 2 -17.55 7.674 -33.956 1 60.24 ? C07 KGL 1401 A 1 HETATM 13 C C08 KGL . . . B 2 -16.978 9.122 -34.233 1 59.99 ? C08 KGL 1401 A 1 HETATM 14 C C09 KGL . . . B 2 -15.571 9.287 -33.562 1 54.07 ? C09 KGL 1401 A 1 HETATM 15 C C11 KGL . . . B 2 -14.228 7.795 -32.049 1 49.37 ? C11 KGL 1401 A 1 HETATM 16 C C12 KGL . . . B 2 -14.223 6.796 -30.897 1 44.86 ? C12 KGL 1401 A 1 HETATM 17 C C14 KGL . . . B 2 -13.899 7.144 -29.589 1 46.61 ? C14 KGL 1401 A 1 HETATM 18 C C16 KGL . . . B 2 -14.282 4.88 -28.928 1 49.5 ? C16 KGL 1401 A 1 HETATM 19 C C18 KGL . . . B 2 -14.577 5.496 -31.216 1 48.6 ? C18 KGL 1401 A 1 HETATM 20 C C19 KGL . . . B 2 -14.316 3.765 -27.905 1 45.17 ? C19 KGL 1401 A 1 HETATM 21 C C27 KGL . . . B 2 -14.983 -0.785 -28.516 1 49.98 ? C27 KGL 1401 A 1 HETATM 22 C C29 KGL . . . B 2 -17.149 -1.333 -29.623 1 55.82 ? C29 KGL 1401 A 1 HETATM 23 C C30 KGL . . . B 2 -18.176 -1.077 -30.51 1 48.34 ? C30 KGL 1401 A 1 HETATM 24 C C31 KGL . . . B 2 -18.122 0.068 -31.327 1 55.79 ? C31 KGL 1401 A 1 HETATM 25 C C32 KGL . . . B 2 -17.071 0.941 -31.258 1 54.62 ? C32 KGL 1401 A 1 HETATM 26 C C33 KGL . . . B 2 -16.014 0.686 -30.334 1 57.33 ? C33 KGL 1401 A 1 HETATM 27 C C35 KGL . . . B 2 -19.166 1.343 -32.995 1 51.14 ? C35 KGL 1401 A 1 HETATM 28 C C36 KGL . . . B 2 -18.127 2.282 -32.969 1 49.99 ? C36 KGL 1401 A 1 HETATM 29 C C37 KGL . . . B 2 -17.046 2.119 -32.099 1 49.28 ? C37 KGL 1401 A 1 HETATM 30 C C38 KGL . . . B 2 -13.501 8.576 -29.191 1 51.66 ? C38 KGL 1401 A 1 HETATM 31 F F39 KGL . . . B 2 -14.563 9.407 -29.269 1 57.4 ? F39 KGL 1401 A 1 HETATM 32 F F40 KGL . . . B 2 -13.024 8.56 -27.933 1 48.16 ? F40 KGL 1401 A 1 HETATM 33 F F41 KGL . . . B 2 -12.544 9.034 -30.007 1 57.89 ? F41 KGL 1401 A 1 HETATM 34 N N04 KGL . . . B 2 -19.008 4.902 -35.442 1 54.24 ? N04 KGL 1401 A 1 HETATM 35 N N05 KGL . . . B 2 -17.961 5.476 -34.844 1 55.15 ? N05 KGL 1401 A 1 HETATM 36 N N10 KGL . . . B 2 -15.505 8.351 -32.464 1 50.59 ? N10 KGL 1401 A 1 HETATM 37 N N23 KGL . . . B 2 -14.1 1.47 -27.642 1 44.48 ? N23 KGL 1401 A 1 HETATM 38 N N24 KGL . . . B 2 -14.094 2.549 -28.392 1 43.68 ? N24 KGL 1401 A 1 HETATM 39 N N34 KGL . . . B 2 -19.137 0.29 -32.202 1 56.52 ? N34 KGL 1401 A 1 HETATM 40 O O13 KGL . . . B 2 -13.242 8.086 -32.606 1 48.44 ? O13 KGL 1401 A 1 HETATM 41 O O25 KGL . . . B 2 -14.284 0.578 -25.682 1 47 ? O25 KGL 1401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 41 #