data_8GVW # _model_server_result.job_id lVE5axjvBEh0WVNKQGTLPg _model_server_result.datetime_utc '2024-10-15 11:20:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":801}' # _entry.id 8GVW # _exptl.entry_id 8GVW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GVW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 L N N ? 2 R N N ? 2 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 553 A CYS 553 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 553 B CYS 553 1_555 B SG CYS 558 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 553 C CYS 553 1_555 C SG CYS 558 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 D SG CYS 553 D CYS 553 1_555 D SG CYS 558 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A ND1 HIS 172 A HIS 172 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc2 A SG CYS 176 A CYS 176 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 A SG CYS 178 A CYS 178 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 A SG CYS 181 A CYS 181 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc5 A OE2 GLU 418 A GLU 418 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc6 A OE1 GLU 421 A GLU 421 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc7 A OD1 ASN 436 A ASN 436 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc8 A OD1 ASP 439 A ASP 439 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc9 B ND1 HIS 172 B HIS 172 1_555 O ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc10 B SG CYS 176 B CYS 176 1_555 O ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc11 B SG CYS 178 B CYS 178 1_555 O ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc12 B SG CYS 181 B CYS 181 1_555 O ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc13 B OE2 GLU 418 B GLU 418 1_555 P CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc14 B OE1 GLU 421 B GLU 421 1_555 P CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc15 B OD1 ASN 436 B ASN 436 1_555 P CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc16 B OD1 ASP 439 B ASP 439 1_555 P CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc17 C ND1 HIS 172 C HIS 172 1_555 U ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc18 C SG CYS 176 C CYS 176 1_555 U ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc19 C SG CYS 178 C CYS 178 1_555 U ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc20 C SG CYS 181 C CYS 181 1_555 U ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc21 C OE2 GLU 418 C GLU 418 1_555 V CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc22 C OE1 GLU 421 C GLU 421 1_555 V CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc23 C OD1 ASN 436 C ASN 436 1_555 V CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc24 C OD1 ASP 439 C ASP 439 1_555 V CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? metalc ? metalc25 D ND1 HIS 172 D HIS 172 1_555 AA ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc26 D SG CYS 176 D CYS 176 1_555 AA ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc27 D SG CYS 178 D CYS 178 1_555 AA ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc28 D SG CYS 181 D CYS 181 1_555 AA ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc29 D OE2 GLU 418 D GLU 418 1_555 BA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc30 D OE1 GLU 421 D GLU 421 1_555 BA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc31 D OD1 ASN 436 D ASN 436 1_555 BA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc32 D OD1 ASP 439 D ASP 439 1_555 BA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8GVW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PTY A 1 801 801 PTY PTY . F 3 POV A 1 802 802 POV POV . G 4 Y01 A 1 803 803 Y01 Y01 . H 5 ZN A 1 804 804 ZN ZN . I 6 CA A 1 805 805 CA CA . J 7 YZY A 1 806 806 YZY YZY . K 7 YZY A 1 807 806 YZY YZY . L 2 PTY B 1 801 801 PTY PTY . M 3 POV B 1 802 802 POV POV . N 4 Y01 B 1 803 803 Y01 Y01 . O 5 ZN B 1 804 804 ZN ZN . P 6 CA B 1 805 805 CA CA . Q 7 YZY B 1 806 806 YZY YZY . R 2 PTY C 1 801 801 PTY PTY . S 3 POV C 1 802 802 POV POV . T 4 Y01 C 1 803 803 Y01 Y01 . U 5 ZN C 1 804 804 ZN ZN . V 6 CA C 1 805 805 CA CA . W 7 YZY C 1 806 806 YZY YZY . X 2 PTY D 1 801 801 PTY PTY . Y 3 POV D 1 802 802 POV POV . Z 4 Y01 D 1 803 803 Y01 Y01 . AA 5 ZN D 1 804 804 ZN ZN . BA 6 CA D 1 805 805 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . R 2 205.736 239.287 210.934 1 79.44 ? C1 PTY 801 C 1 HETATM 2 C C2 PTY . . . R 2 204.2 241.71 216.324 1 79.44 ? C2 PTY 801 C 1 HETATM 3 C C3 PTY . . . R 2 203.791 240.293 216.623 1 79.44 ? C3 PTY 801 C 1 HETATM 4 O O4 PTY . . . R 2 205.214 239.918 209.744 1 79.44 ? O4 PTY 801 C 1 HETATM 5 C C5 PTY . . . R 2 204.885 237.878 212.841 1 79.44 ? C5 PTY 801 C 1 HETATM 6 C C6 PTY . . . R 2 204.829 238.151 211.354 1 79.44 ? C6 PTY 801 C 1 HETATM 7 O O7 PTY . . . R 2 205.241 236.938 210.665 1 79.44 ? O7 PTY 801 C 1 HETATM 8 C C8 PTY . . . R 2 204.385 235.902 210.603 1 79.44 ? C8 PTY 801 C 1 HETATM 9 O O10 PTY . . . R 2 203.241 235.954 210.973 1 79.44 ? O10 PTY 801 C 1 HETATM 10 C C11 PTY . . . R 2 205.008 234.672 210.014 1 79.44 ? C11 PTY 801 C 1 HETATM 11 C C12 PTY . . . R 2 204.664 234.481 208.573 1 79.44 ? C12 PTY 801 C 1 HETATM 12 C C13 PTY . . . R 2 205.202 235.601 207.702 1 79.44 ? C13 PTY 801 C 1 HETATM 13 C C14 PTY . . . R 2 204.812 235.5 206.253 1 79.44 ? C14 PTY 801 C 1 HETATM 14 C C15 PTY . . . R 2 205.49 236.5 205.351 1 79.44 ? C15 PTY 801 C 1 HETATM 15 C C16 PTY . . . R 2 205.222 236.259 203.89 1 79.44 ? C16 PTY 801 C 1 HETATM 16 C C17 PTY . . . R 2 205.979 237.148 202.936 1 79.44 ? C17 PTY 801 C 1 HETATM 17 C C18 PTY . . . R 2 205.869 236.685 201.509 1 79.44 ? C18 PTY 801 C 1 HETATM 18 C C19 PTY . . . R 2 206.46 237.599 200.471 1 79.44 ? C19 PTY 801 C 1 HETATM 19 C C20 PTY . . . R 2 206.282 237.074 199.07 1 79.44 ? C20 PTY 801 C 1 HETATM 20 C C21 PTY . . . R 2 206.641 238.043 197.976 1 79.44 ? C21 PTY 801 C 1 HETATM 21 C C22 PTY . . . R 2 206.429 237.491 196.589 1 79.44 ? C22 PTY 801 C 1 HETATM 22 C C23 PTY . . . R 2 206.756 238.457 195.482 1 79.44 ? C23 PTY 801 C 1 HETATM 23 C C24 PTY . . . R 2 206.661 237.864 194.101 1 79.44 ? C24 PTY 801 C 1 HETATM 24 C C25 PTY . . . R 2 206.978 238.836 192.995 1 79.44 ? C25 PTY 801 C 1 HETATM 25 C C26 PTY . . . R 2 208.354 239.446 193.081 1 79.44 ? C26 PTY 801 C 1 HETATM 26 C C27 PTY . . . R 2 208.626 240.497 192.036 1 79.44 ? C27 PTY 801 C 1 HETATM 27 C C28 PTY . . . R 2 209.984 241.142 192.104 1 79.44 ? C28 PTY 801 C 1 HETATM 28 C C29 PTY . . . R 2 210.204 242.193 191.042 1 79.44 ? C29 PTY 801 C 1 HETATM 29 C C30 PTY . . . R 2 205.742 239.55 208.58 1 79.44 ? C30 PTY 801 C 1 HETATM 30 C C31 PTY . . . R 2 205.364 240.509 207.485 1 79.44 ? C31 PTY 801 C 1 HETATM 31 O O30 PTY . . . R 2 206.431 238.574 208.443 1 79.44 ? O30 PTY 801 C 1 HETATM 32 C C32 PTY . . . R 2 206.054 240.25 206.184 1 79.44 ? C32 PTY 801 C 1 HETATM 33 C C33 PTY . . . R 2 205.828 241.37 205.182 1 79.44 ? C33 PTY 801 C 1 HETATM 34 C C34 PTY . . . R 2 206.454 241.139 203.83 1 79.44 ? C34 PTY 801 C 1 HETATM 35 C C35 PTY . . . R 2 206.268 242.281 202.862 1 79.44 ? C35 PTY 801 C 1 HETATM 36 C C36 PTY . . . R 2 206.84 242.034 201.489 1 79.44 ? C36 PTY 801 C 1 HETATM 37 C C37 PTY . . . R 2 206.668 243.189 200.535 1 79.44 ? C37 PTY 801 C 1 HETATM 38 P P1 PTY . . . R 2 203.294 239.559 214.128 1 79.44 ? P1 PTY 801 C 1 HETATM 39 O O11 PTY . . . R 2 204.105 239.414 215.506 1 79.44 ? O11 PTY 801 C 1 HETATM 40 O O12 PTY . . . R 2 201.826 239.607 214.448 1 79.44 ? O12 PTY 801 C 1 HETATM 41 O O13 PTY . . . R 2 203.918 240.647 213.298 1 79.44 ? O13 PTY 801 C 1 HETATM 42 O O14 PTY . . . R 2 203.576 238.148 213.416 1 79.44 ? O14 PTY 801 C 1 HETATM 43 N N1 PTY . . . R 2 205.638 241.81 216.069 1 79.44 ? N1 PTY 801 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #