data_8GVW # _model_server_result.job_id vKlCr_NR-LxZlzagFFGMVw _model_server_result.datetime_utc '2024-10-15 11:27:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":802}' # _entry.id 8GVW # _exptl.entry_id 8GVW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GVW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 M N N ? 3 S N N ? 3 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 553 A CYS 553 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 553 B CYS 553 1_555 B SG CYS 558 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 553 C CYS 553 1_555 C SG CYS 558 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 D SG CYS 553 D CYS 553 1_555 D SG CYS 558 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A ND1 HIS 172 A HIS 172 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc2 A SG CYS 176 A CYS 176 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 A SG CYS 178 A CYS 178 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 A SG CYS 181 A CYS 181 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc5 A OE2 GLU 418 A GLU 418 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc6 A OE1 GLU 421 A GLU 421 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc7 A OD1 ASN 436 A ASN 436 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc8 A OD1 ASP 439 A ASP 439 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc9 B ND1 HIS 172 B HIS 172 1_555 O ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc10 B SG CYS 176 B CYS 176 1_555 O ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc11 B SG CYS 178 B CYS 178 1_555 O ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc12 B SG CYS 181 B CYS 181 1_555 O ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc13 B OE2 GLU 418 B GLU 418 1_555 P CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc14 B OE1 GLU 421 B GLU 421 1_555 P CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc15 B OD1 ASN 436 B ASN 436 1_555 P CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc16 B OD1 ASP 439 B ASP 439 1_555 P CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc17 C ND1 HIS 172 C HIS 172 1_555 U ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc18 C SG CYS 176 C CYS 176 1_555 U ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc19 C SG CYS 178 C CYS 178 1_555 U ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc20 C SG CYS 181 C CYS 181 1_555 U ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc21 C OE2 GLU 418 C GLU 418 1_555 V CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc22 C OE1 GLU 421 C GLU 421 1_555 V CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc23 C OD1 ASN 436 C ASN 436 1_555 V CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc24 C OD1 ASP 439 C ASP 439 1_555 V CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? metalc ? metalc25 D ND1 HIS 172 D HIS 172 1_555 AA ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc26 D SG CYS 176 D CYS 176 1_555 AA ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc27 D SG CYS 178 D CYS 178 1_555 AA ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc28 D SG CYS 181 D CYS 181 1_555 AA ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc29 D OE2 GLU 418 D GLU 418 1_555 BA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc30 D OE1 GLU 421 D GLU 421 1_555 BA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc31 D OD1 ASN 436 D ASN 436 1_555 BA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc32 D OD1 ASP 439 D ASP 439 1_555 BA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # _atom_sites.entry_id 8GVW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PTY A 1 801 801 PTY PTY . F 3 POV A 1 802 802 POV POV . G 4 Y01 A 1 803 803 Y01 Y01 . H 5 ZN A 1 804 804 ZN ZN . I 6 CA A 1 805 805 CA CA . J 7 YZY A 1 806 806 YZY YZY . K 7 YZY A 1 807 806 YZY YZY . L 2 PTY B 1 801 801 PTY PTY . M 3 POV B 1 802 802 POV POV . N 4 Y01 B 1 803 803 Y01 Y01 . O 5 ZN B 1 804 804 ZN ZN . P 6 CA B 1 805 805 CA CA . Q 7 YZY B 1 806 806 YZY YZY . R 2 PTY C 1 801 801 PTY PTY . S 3 POV C 1 802 802 POV POV . T 4 Y01 C 1 803 803 Y01 Y01 . U 5 ZN C 1 804 804 ZN ZN . V 6 CA C 1 805 805 CA CA . W 7 YZY C 1 806 806 YZY YZY . X 2 PTY D 1 801 801 PTY PTY . Y 3 POV D 1 802 802 POV POV . Z 4 Y01 D 1 803 803 Y01 Y01 . AA 5 ZN D 1 804 804 ZN ZN . BA 6 CA D 1 805 805 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P POV . . . F 3 223.383 181.907 180.83 1 95.15 ? P POV 802 A 1 HETATM 2 C C1 POV . . . F 3 224.969 183.04 182.632 1 95.15 ? C1 POV 802 A 1 HETATM 3 C C2 POV . . . F 3 224.607 182.395 183.952 1 95.15 ? C2 POV 802 A 1 HETATM 4 C C3 POV . . . F 3 223.673 183.235 184.792 1 95.15 ? C3 POV 802 A 1 HETATM 5 C C210 POV . . . F 3 228.464 184.204 194.085 1 95.15 ? C210 POV 802 A 1 HETATM 6 C C310 POV . . . F 3 226.893 191.19 195.268 1 95.15 ? C310 POV 802 A 1 HETATM 7 O O11 POV . . . F 3 223.79 183.138 181.78 1 95.15 ? O11 POV 802 A 1 HETATM 8 C C211 POV . . . F 3 229.027 184.943 195.258 1 95.15 ? C211 POV 802 A 1 HETATM 9 C C311 POV . . . F 3 226.671 191.335 196.752 1 95.15 ? C311 POV 802 A 1 HETATM 10 O O12 POV . . . F 3 222.003 182.402 180.177 1 95.15 ? O12 POV 802 A 1 HETATM 11 C C212 POV . . . F 3 227.983 185.588 196.114 1 95.15 ? C212 POV 802 A 1 HETATM 12 C C312 POV . . . F 3 226.952 192.717 197.283 1 95.15 ? C312 POV 802 A 1 HETATM 13 O O13 POV . . . F 3 224.399 181.826 179.725 1 95.15 ? O13 POV 802 A 1 HETATM 14 C C213 POV . . . F 3 228.546 186.383 197.28 1 95.15 ? C213 POV 802 A 1 HETATM 15 O O14 POV . . . F 3 223.078 180.687 181.655 1 95.15 ? O14 POV 802 A 1 HETATM 16 C C214 POV . . . F 3 227.509 187.113 198.096 1 95.15 ? C214 POV 802 A 1 HETATM 17 C C215 POV . . . F 3 226.491 186.216 198.752 1 95.15 ? C215 POV 802 A 1 HETATM 18 C C216 POV . . . F 3 225.461 186.951 199.574 1 95.15 ? C216 POV 802 A 1 HETATM 19 C C217 POV . . . F 3 226.036 187.767 200.703 1 95.15 ? C217 POV 802 A 1 HETATM 20 C C21 POV . . . F 3 226.592 181.164 184.632 1 95.15 ? C21 POV 802 A 1 HETATM 21 O O21 POV . . . F 3 225.765 182.209 184.814 1 95.15 ? O21 POV 802 A 1 HETATM 22 C C22 POV . . . F 3 227.253 180.708 185.914 1 95.15 ? C22 POV 802 A 1 HETATM 23 O O22 POV . . . F 3 226.788 180.642 183.565 1 95.15 ? O22 POV 802 A 1 HETATM 24 C C23 POV . . . F 3 228.344 181.607 186.444 1 95.15 ? C23 POV 802 A 1 HETATM 25 C C24 POV . . . F 3 227.834 182.93 186.998 1 95.15 ? C24 POV 802 A 1 HETATM 26 C C25 POV . . . F 3 228.63 183.491 188.148 1 95.15 ? C25 POV 802 A 1 HETATM 27 C C26 POV . . . F 3 228.39 182.785 189.458 1 95.15 ? C26 POV 802 A 1 HETATM 28 C C27 POV . . . F 3 228.989 183.489 190.668 1 95.15 ? C27 POV 802 A 1 HETATM 29 C C28 POV . . . F 3 228.617 182.874 191.979 1 95.15 ? C28 POV 802 A 1 HETATM 30 C C29 POV . . . F 3 229.17 183.616 193.155 1 95.15 ? C29 POV 802 A 1 HETATM 31 C C31 POV . . . F 3 223.864 184.983 186.365 1 95.15 ? C31 POV 802 A 1 HETATM 32 O O31 POV . . . F 3 224.454 184.288 185.398 1 95.15 ? O31 POV 802 A 1 HETATM 33 C C32 POV . . . F 3 224.791 186.009 186.954 1 95.15 ? C32 POV 802 A 1 HETATM 34 O O32 POV . . . F 3 222.73 184.793 186.716 1 95.15 ? O32 POV 802 A 1 HETATM 35 C C33 POV . . . F 3 224.949 185.886 188.439 1 95.15 ? C33 POV 802 A 1 HETATM 36 C C34 POV . . . F 3 225.735 187.04 189.039 1 95.15 ? C34 POV 802 A 1 HETATM 37 C C35 POV . . . F 3 225.771 187.051 190.548 1 95.15 ? C35 POV 802 A 1 HETATM 38 C C36 POV . . . F 3 226.373 188.3 191.143 1 95.15 ? C36 POV 802 A 1 HETATM 39 C C37 POV . . . F 3 226.269 188.385 192.646 1 95.15 ? C37 POV 802 A 1 HETATM 40 C C38 POV . . . F 3 226.713 189.708 193.221 1 95.15 ? C38 POV 802 A 1 HETATM 41 C C39 POV . . . F 3 226.535 189.832 194.714 1 95.15 ? C39 POV 802 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #