data_8GVW # _model_server_result.job_id SVP-aEV_Fi_mjAoUxUyvbA _model_server_result.datetime_utc '2024-10-15 11:20:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":803}' # _entry.id 8GVW # _exptl.entry_id 8GVW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GVW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 N N N ? 4 T N N ? 4 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 553 A CYS 553 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 553 B CYS 553 1_555 B SG CYS 558 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 553 C CYS 553 1_555 C SG CYS 558 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 D SG CYS 553 D CYS 553 1_555 D SG CYS 558 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A ND1 HIS 172 A HIS 172 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc2 A SG CYS 176 A CYS 176 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 A SG CYS 178 A CYS 178 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 A SG CYS 181 A CYS 181 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc5 A OE2 GLU 418 A GLU 418 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc6 A OE1 GLU 421 A GLU 421 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc7 A OD1 ASN 436 A ASN 436 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc8 A OD1 ASP 439 A ASP 439 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc9 B ND1 HIS 172 B HIS 172 1_555 O ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc10 B SG CYS 176 B CYS 176 1_555 O ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc11 B SG CYS 178 B CYS 178 1_555 O ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc12 B SG CYS 181 B CYS 181 1_555 O ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc13 B OE2 GLU 418 B GLU 418 1_555 P CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc14 B OE1 GLU 421 B GLU 421 1_555 P CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc15 B OD1 ASN 436 B ASN 436 1_555 P CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc16 B OD1 ASP 439 B ASP 439 1_555 P CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc17 C ND1 HIS 172 C HIS 172 1_555 U ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc18 C SG CYS 176 C CYS 176 1_555 U ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc19 C SG CYS 178 C CYS 178 1_555 U ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc20 C SG CYS 181 C CYS 181 1_555 U ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc21 C OE2 GLU 418 C GLU 418 1_555 V CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc22 C OE1 GLU 421 C GLU 421 1_555 V CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc23 C OD1 ASN 436 C ASN 436 1_555 V CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc24 C OD1 ASP 439 C ASP 439 1_555 V CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? metalc ? metalc25 D ND1 HIS 172 D HIS 172 1_555 AA ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc26 D SG CYS 176 D CYS 176 1_555 AA ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc27 D SG CYS 178 D CYS 178 1_555 AA ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc28 D SG CYS 181 D CYS 181 1_555 AA ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc29 D OE2 GLU 418 D GLU 418 1_555 BA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc30 D OE1 GLU 421 D GLU 421 1_555 BA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc31 D OD1 ASN 436 D ASN 436 1_555 BA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc32 D OD1 ASP 439 D ASP 439 1_555 BA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8GVW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PTY A 1 801 801 PTY PTY . F 3 POV A 1 802 802 POV POV . G 4 Y01 A 1 803 803 Y01 Y01 . H 5 ZN A 1 804 804 ZN ZN . I 6 CA A 1 805 805 CA CA . J 7 YZY A 1 806 806 YZY YZY . K 7 YZY A 1 807 806 YZY YZY . L 2 PTY B 1 801 801 PTY PTY . M 3 POV B 1 802 802 POV POV . N 4 Y01 B 1 803 803 Y01 Y01 . O 5 ZN B 1 804 804 ZN ZN . P 6 CA B 1 805 805 CA CA . Q 7 YZY B 1 806 806 YZY YZY . R 2 PTY C 1 801 801 PTY PTY . S 3 POV C 1 802 802 POV POV . T 4 Y01 C 1 803 803 Y01 Y01 . U 5 ZN C 1 804 804 ZN ZN . V 6 CA C 1 805 805 CA CA . W 7 YZY C 1 806 806 YZY YZY . X 2 PTY D 1 801 801 PTY PTY . Y 3 POV D 1 802 802 POV POV . Z 4 Y01 D 1 803 803 Y01 Y01 . AA 5 ZN D 1 804 804 ZN ZN . BA 6 CA D 1 805 805 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . N 4 210.586 192.742 202.417 1 63.47 ? CAA Y01 803 B 1 HETATM 2 C CBA Y01 . . . N 4 209.731 193.665 201.562 1 63.47 ? CBA Y01 803 B 1 HETATM 3 C CAB Y01 . . . N 4 208.964 194.65 202.432 1 63.47 ? CAB Y01 803 B 1 HETATM 4 C CAN Y01 . . . N 4 208.81 192.875 200.627 1 63.47 ? CAN Y01 803 B 1 HETATM 5 C CAJ Y01 . . . N 4 207.949 191.822 201.283 1 63.47 ? CAJ Y01 803 B 1 HETATM 6 C CAO Y01 . . . N 4 206.502 192.231 201.43 1 63.47 ? CAO Y01 803 B 1 HETATM 7 C CBB Y01 . . . N 4 205.633 191.286 202.274 1 63.47 ? CBB Y01 803 B 1 HETATM 8 C CAC Y01 . . . N 4 205.769 189.858 201.75 1 63.47 ? CAC Y01 803 B 1 HETATM 9 C CBE Y01 . . . N 4 205.968 191.446 203.772 1 63.47 ? CBE Y01 803 B 1 HETATM 10 C CAP Y01 . . . N 4 206.066 192.943 204.183 1 63.47 ? CAP Y01 803 B 1 HETATM 11 C CAQ Y01 . . . N 4 205.442 193.069 205.584 1 63.47 ? CAQ Y01 803 B 1 HETATM 12 C CBG Y01 . . . N 4 205.494 191.637 206.098 1 63.47 ? CBG Y01 803 B 1 HETATM 13 C CBI Y01 . . . N 4 205.054 190.814 204.869 1 63.47 ? CBI Y01 803 B 1 HETATM 14 C CAE Y01 . . . N 4 203.575 191.053 204.52 1 63.47 ? CAE Y01 803 B 1 HETATM 15 C CAU Y01 . . . N 4 205.3 189.343 205.222 1 63.47 ? CAU Y01 803 B 1 HETATM 16 C CAS Y01 . . . N 4 204.542 188.937 206.489 1 63.47 ? CAS Y01 803 B 1 HETATM 17 C CBF Y01 . . . N 4 204.924 189.798 207.701 1 63.47 ? CBF Y01 803 B 1 HETATM 18 C CBD Y01 . . . N 4 204.782 191.3 207.402 1 63.47 ? CBD Y01 803 B 1 HETATM 19 C CAK Y01 . . . N 4 205.363 192.112 208.557 1 63.47 ? CAK Y01 803 B 1 HETATM 20 C CAI Y01 . . . N 4 205.065 191.53 209.905 1 63.47 ? CAI Y01 803 B 1 HETATM 21 C CAZ Y01 . . . N 4 204.51 190.346 210.122 1 63.47 ? CAZ Y01 803 B 1 HETATM 22 C CAV Y01 . . . N 4 204.201 189.882 211.532 1 63.47 ? CAV Y01 803 B 1 HETATM 23 C CBH Y01 . . . N 4 204.17 189.379 208.992 1 63.47 ? CBH Y01 803 B 1 HETATM 24 C CAD Y01 . . . N 4 202.643 189.395 208.799 1 63.47 ? CAD Y01 803 B 1 HETATM 25 C CAT Y01 . . . N 4 204.633 187.955 209.377 1 63.47 ? CAT Y01 803 B 1 HETATM 26 C CAR Y01 . . . N 4 204.232 187.537 210.79 1 63.47 ? CAR Y01 803 B 1 HETATM 27 C CBC Y01 . . . N 4 204.78 188.512 211.793 1 63.47 ? CBC Y01 803 B 1 HETATM 28 O OAW Y01 . . . N 4 204.411 188.066 213.131 1 63.47 ? OAW Y01 803 B 1 HETATM 29 C CAY Y01 . . . N 4 205.285 188.246 214.114 1 63.47 ? CAY Y01 803 B 1 HETATM 30 O OAG Y01 . . . N 4 205.894 189.261 214.288 1 63.47 ? OAG Y01 803 B 1 HETATM 31 C CAM Y01 . . . N 4 205.502 186.982 214.905 1 63.47 ? CAM Y01 803 B 1 HETATM 32 C CAL Y01 . . . N 4 205.199 186.978 216.389 1 63.47 ? CAL Y01 803 B 1 HETATM 33 C CAX Y01 . . . N 4 203.725 187.047 216.747 1 63.47 ? CAX Y01 803 B 1 HETATM 34 O OAH Y01 . . . N 4 203.411 187.003 217.952 1 63.47 ? OAH Y01 803 B 1 HETATM 35 O OAF Y01 . . . N 4 202.897 187.141 215.821 1 63.47 ? OAF Y01 803 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #