data_8GW5 # _model_server_result.job_id pAwSYZNZmYIOMJijax2aWg _model_server_result.datetime_utc '2024-11-16 19:29:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gw5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 8GW5 # _exptl.entry_id 8GW5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GW5 _cell.length_a 88.224 _cell.length_b 88.224 _cell.length_c 57.999 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GW5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 28.9995 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8GW5 _atom_sites.fract_transf_matrix[1][1] 0.011335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 201 201 GOL GOL . D 2 GOL A 1 202 202 GOL GOL . E 3 HOH A 1 301 127 HOH HOH . E 3 HOH A 2 302 86 HOH HOH . E 3 HOH A 3 303 91 HOH HOH . E 3 HOH A 4 304 56 HOH HOH . E 3 HOH A 5 305 81 HOH HOH . E 3 HOH A 6 306 55 HOH HOH . E 3 HOH A 7 307 12 HOH HOH . E 3 HOH A 8 308 77 HOH HOH . E 3 HOH A 9 309 87 HOH HOH . E 3 HOH A 10 310 114 HOH HOH . E 3 HOH A 11 311 44 HOH HOH . E 3 HOH A 12 312 8 HOH HOH . E 3 HOH A 13 313 80 HOH HOH . E 3 HOH A 14 314 53 HOH HOH . E 3 HOH A 15 315 2 HOH HOH . E 3 HOH A 16 316 50 HOH HOH . E 3 HOH A 17 317 15 HOH HOH . E 3 HOH A 18 318 13 HOH HOH . E 3 HOH A 19 319 6 HOH HOH . E 3 HOH A 20 320 43 HOH HOH . E 3 HOH A 21 321 19 HOH HOH . E 3 HOH A 22 322 47 HOH HOH . E 3 HOH A 23 323 112 HOH HOH . E 3 HOH A 24 324 60 HOH HOH . E 3 HOH A 25 325 20 HOH HOH . E 3 HOH A 26 326 14 HOH HOH . E 3 HOH A 27 327 7 HOH HOH . E 3 HOH A 28 328 61 HOH HOH . E 3 HOH A 29 329 181 HOH HOH . E 3 HOH A 30 330 22 HOH HOH . E 3 HOH A 31 331 42 HOH HOH . E 3 HOH A 32 332 123 HOH HOH . E 3 HOH A 33 333 48 HOH HOH . E 3 HOH A 34 334 17 HOH HOH . E 3 HOH A 35 335 10 HOH HOH . E 3 HOH A 36 336 67 HOH HOH . E 3 HOH A 37 337 84 HOH HOH . E 3 HOH A 38 338 159 HOH HOH . E 3 HOH A 39 339 126 HOH HOH . E 3 HOH A 40 340 37 HOH HOH . E 3 HOH A 41 341 69 HOH HOH . E 3 HOH A 42 342 65 HOH HOH . E 3 HOH A 43 343 52 HOH HOH . E 3 HOH A 44 344 182 HOH HOH . E 3 HOH A 45 345 115 HOH HOH . E 3 HOH A 46 346 94 HOH HOH . E 3 HOH A 47 347 49 HOH HOH . E 3 HOH A 48 348 145 HOH HOH . E 3 HOH A 49 349 152 HOH HOH . E 3 HOH A 50 350 46 HOH HOH . E 3 HOH A 51 351 25 HOH HOH . E 3 HOH A 52 352 66 HOH HOH . E 3 HOH A 53 353 88 HOH HOH . E 3 HOH A 54 354 89 HOH HOH . E 3 HOH A 55 355 35 HOH HOH . E 3 HOH A 56 356 75 HOH HOH . E 3 HOH A 57 357 110 HOH HOH . E 3 HOH A 58 358 119 HOH HOH . E 3 HOH A 59 359 120 HOH HOH . E 3 HOH A 60 360 40 HOH HOH . E 3 HOH A 61 361 146 HOH HOH . E 3 HOH A 62 362 131 HOH HOH . E 3 HOH A 63 363 41 HOH HOH . E 3 HOH A 64 364 108 HOH HOH . E 3 HOH A 65 365 85 HOH HOH . E 3 HOH A 66 366 142 HOH HOH . E 3 HOH A 67 367 82 HOH HOH . E 3 HOH A 68 368 141 HOH HOH . E 3 HOH A 69 369 168 HOH HOH . E 3 HOH A 70 370 179 HOH HOH . E 3 HOH A 71 371 59 HOH HOH . E 3 HOH A 72 372 175 HOH HOH . E 3 HOH A 73 373 38 HOH HOH . E 3 HOH A 74 374 183 HOH HOH . E 3 HOH A 75 375 98 HOH HOH . E 3 HOH A 76 376 184 HOH HOH . E 3 HOH A 77 377 54 HOH HOH . E 3 HOH A 78 378 174 HOH HOH . E 3 HOH A 79 379 186 HOH HOH . E 3 HOH A 80 380 163 HOH HOH . E 3 HOH A 81 381 177 HOH HOH . E 3 HOH A 82 382 138 HOH HOH . E 3 HOH A 83 383 76 HOH HOH . E 3 HOH A 84 384 185 HOH HOH . E 3 HOH A 85 385 92 HOH HOH . E 3 HOH A 86 386 165 HOH HOH . E 3 HOH A 87 387 128 HOH HOH . E 3 HOH A 88 388 133 HOH HOH . E 3 HOH A 89 389 106 HOH HOH . E 3 HOH A 90 390 118 HOH HOH . E 3 HOH A 91 391 172 HOH HOH . E 3 HOH A 92 392 21 HOH HOH . E 3 HOH A 93 393 156 HOH HOH . E 3 HOH A 94 394 134 HOH HOH . E 3 HOH A 95 395 103 HOH HOH . F 3 HOH B 1 201 79 HOH HOH . F 3 HOH B 2 202 187 HOH HOH . F 3 HOH B 3 203 27 HOH HOH . F 3 HOH B 4 204 71 HOH HOH . F 3 HOH B 5 205 26 HOH HOH . F 3 HOH B 6 206 135 HOH HOH . F 3 HOH B 7 207 162 HOH HOH . F 3 HOH B 8 208 153 HOH HOH . F 3 HOH B 9 209 104 HOH HOH . F 3 HOH B 10 210 32 HOH HOH . F 3 HOH B 11 211 62 HOH HOH . F 3 HOH B 12 212 73 HOH HOH . F 3 HOH B 13 213 154 HOH HOH . F 3 HOH B 14 214 3 HOH HOH . F 3 HOH B 15 215 149 HOH HOH . F 3 HOH B 16 216 45 HOH HOH . F 3 HOH B 17 217 105 HOH HOH . F 3 HOH B 18 218 31 HOH HOH . F 3 HOH B 19 219 9 HOH HOH . F 3 HOH B 20 220 28 HOH HOH . F 3 HOH B 21 221 78 HOH HOH . F 3 HOH B 22 222 161 HOH HOH . F 3 HOH B 23 223 36 HOH HOH . F 3 HOH B 24 224 51 HOH HOH . F 3 HOH B 25 225 30 HOH HOH . F 3 HOH B 26 226 178 HOH HOH . F 3 HOH B 27 227 97 HOH HOH . F 3 HOH B 28 228 29 HOH HOH . F 3 HOH B 29 229 24 HOH HOH . F 3 HOH B 30 230 18 HOH HOH . F 3 HOH B 31 231 16 HOH HOH . F 3 HOH B 32 232 72 HOH HOH . F 3 HOH B 33 233 188 HOH HOH . F 3 HOH B 34 234 90 HOH HOH . F 3 HOH B 35 235 107 HOH HOH . F 3 HOH B 36 236 34 HOH HOH . F 3 HOH B 37 237 139 HOH HOH . F 3 HOH B 38 238 58 HOH HOH . F 3 HOH B 39 239 68 HOH HOH . F 3 HOH B 40 240 137 HOH HOH . F 3 HOH B 41 241 169 HOH HOH . F 3 HOH B 42 242 189 HOH HOH . F 3 HOH B 43 243 143 HOH HOH . F 3 HOH B 44 244 74 HOH HOH . F 3 HOH B 45 245 167 HOH HOH . F 3 HOH B 46 246 132 HOH HOH . F 3 HOH B 47 247 100 HOH HOH . F 3 HOH B 48 248 83 HOH HOH . F 3 HOH B 49 249 93 HOH HOH . F 3 HOH B 50 250 121 HOH HOH . F 3 HOH B 51 251 160 HOH HOH . F 3 HOH B 52 252 157 HOH HOH . F 3 HOH B 53 253 155 HOH HOH . F 3 HOH B 54 254 164 HOH HOH . F 3 HOH B 55 255 130 HOH HOH . F 3 HOH B 56 256 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 19.742 -32.21 15.484 1 28.6 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . D 2 20.718 -31.235 15.397 1 22.81 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . D 2 18.576 -31.653 14.632 1 28.37 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . D 2 18.837 -31.837 13.294 1 25.03 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . D 2 17.32 -32.348 15.122 1 36.37 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . D 2 16.228 -31.692 14.516 1 29.86 ? O3 GOL 202 A 1 HETATM 7 H H11 GOL . . . D 2 19.444 -32.374 16.392 1 34.24 ? H11 GOL 202 A 1 HETATM 8 H H12 GOL . . . D 2 20.027 -33.07 15.138 1 34.24 ? H12 GOL 202 A 1 HETATM 9 H HO1 GOL . . . D 2 21.387 -31.597 15.018 1 27.3 ? HO1 GOL 202 A 1 HETATM 10 H H2 GOL . . . D 2 18.462 -30.698 14.76 1 33.97 ? H2 GOL 202 A 1 HETATM 11 H HO2 GOL . . . D 2 19.193 -32.605 13.186 1 29.97 ? HO2 GOL 202 A 1 HETATM 12 H H31 GOL . . . D 2 17.3 -32.314 16.091 1 43.57 ? H31 GOL 202 A 1 HETATM 13 H H32 GOL . . . D 2 17.376 -33.291 14.899 1 43.57 ? H32 GOL 202 A 1 HETATM 14 H HO3 GOL . . . D 2 16.538 -31.214 13.865 1 35.76 ? HO3 GOL 202 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #