data_8GW6 # _model_server_result.job_id ZhRgA5HGnSvC-0OabB60nw _model_server_result.datetime_utc '2024-12-27 19:17:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gw6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":902}' # _entry.id 8GW6 # _exptl.entry_id 8GW6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GW6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GW6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 374 n n CBA CAB Y01 sing 375 n n CBA CAN Y01 sing 376 n n CAN CAJ Y01 sing 377 n n CAJ CAO Y01 sing 378 n n CAO CBB Y01 sing 379 n n CBB CAC Y01 sing 380 n n CBB CBE Y01 sing 381 n n CBE CAP Y01 sing 382 n n CBE CBI Y01 sing 383 n n CAP CAQ Y01 sing 384 n n CAQ CBG Y01 sing 385 n n CBG CBI Y01 sing 386 n n CBG CBD Y01 sing 387 n n CBI CAE Y01 sing 388 n n CBI CAU Y01 sing 389 n n CAU CAS Y01 sing 390 n n CAS CBF Y01 sing 391 n n CBF CBD Y01 sing 392 n n CBF CBH Y01 sing 393 n n CBD CAK Y01 sing 394 n n CAK CAI Y01 sing 395 n n CAI CAZ Y01 doub 396 n n CAZ CAV Y01 sing 397 n n CAZ CBH Y01 sing 398 n n CAV CBC Y01 sing 399 n n CBH CAD Y01 sing 400 n n CBH CAT Y01 sing 401 n n CAT CAR Y01 sing 402 n n CAR CBC Y01 sing 403 n n CBC OAW Y01 sing 404 n n OAW CAY Y01 sing 405 n n CAY OAG Y01 doub 406 n n CAY CAM Y01 sing 407 n n CAM CAL Y01 sing 408 n n CAL CAX Y01 sing 409 n n CAX OAH Y01 sing 410 n n CAX OAF Y01 doub 411 n n CAA HAA1 Y01 sing 412 n n CAA HAA2 Y01 sing 413 n n CAA HAA3 Y01 sing 414 n n CBA HBA Y01 sing 415 n n CAB HAB1 Y01 sing 416 n n CAB HAB2 Y01 sing 417 n n CAB HAB3 Y01 sing 418 n n CAN HAN1 Y01 sing 419 n n CAN HAN2 Y01 sing 420 n n CAJ HAJ1 Y01 sing 421 n n CAJ HAJ2 Y01 sing 422 n n CAO HAO1 Y01 sing 423 n n CAO HAO2 Y01 sing 424 n n CBB HBB Y01 sing 425 n n CAC HAC1 Y01 sing 426 n n CAC HAC2 Y01 sing 427 n n CAC HAC3 Y01 sing 428 n n CBE HBE Y01 sing 429 n n CAP HAP1 Y01 sing 430 n n CAP HAP2 Y01 sing 431 n n CAQ HAQ1 Y01 sing 432 n n CAQ HAQ2 Y01 sing 433 n n CBG HBG Y01 sing 434 n n CBD HBD Y01 sing 435 n n CAE HAE1 Y01 sing 436 n n CAE HAE2 Y01 sing 437 n n CAE HAE3 Y01 sing 438 n n CAU HAU1 Y01 sing 439 n n CAU HAU2 Y01 sing 440 n n CAS HAS1 Y01 sing 441 n n CAS HAS2 Y01 sing 442 n n CBF HBF Y01 sing 443 n n CAK HAK1 Y01 sing 444 n n CAK HAK2 Y01 sing 445 n n CAI HAI Y01 sing 446 n n CAV HAV1 Y01 sing 447 n n CAV HAV2 Y01 sing 448 n n CBC HBC Y01 sing 449 n n CAD HAD1 Y01 sing 450 n n CAD HAD2 Y01 sing 451 n n CAD HAD3 Y01 sing 452 n n CAT HAT1 Y01 sing 453 n n CAT HAT2 Y01 sing 454 n n CAR HAR1 Y01 sing 455 n n CAR HAR2 Y01 sing 456 n n CAM HAM1 Y01 sing 457 n n CAM HAM2 Y01 sing 458 n n CAL HAL1 Y01 sing 459 n n CAL HAL2 Y01 sing 460 n n OAH HAH Y01 sing 461 n n # _atom_sites.entry_id 8GW6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CL A 1 901 839 CL CL . E 3 Y01 A 1 902 840 Y01 Y01 . F 3 Y01 A 1 903 840 Y01 Y01 . G 2 CL B 1 901 839 CL CL . H 3 Y01 C 1 901 840 Y01 Y01 . I 2 CL C 1 902 839 CL CL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . E 3 104.122 106.636 107.875 1 20 ? CAA Y01 902 A 1 HETATM 2 C CBA Y01 . . . E 3 105.551 106.075 107.846 1 20 ? CBA Y01 902 A 1 HETATM 3 C CAB Y01 . . . E 3 106.33 106.757 106.737 1 20 ? CAB Y01 902 A 1 HETATM 4 C CAN Y01 . . . E 3 106.294 106.189 109.188 1 20 ? CAN Y01 902 A 1 HETATM 5 C CAJ Y01 . . . E 3 105.999 107.431 110.016 1 20 ? CAJ Y01 902 A 1 HETATM 6 C CAO Y01 . . . E 3 104.715 107.325 110.849 1 20 ? CAO Y01 902 A 1 HETATM 7 C CBB Y01 . . . E 3 104.877 107.128 112.359 1 20 ? CBB Y01 902 A 1 HETATM 8 C CAC Y01 . . . E 3 103.96 108.121 113.043 1 20 ? CAC Y01 902 A 1 HETATM 9 C CBE Y01 . . . E 3 104.578 105.686 112.871 1 20 ? CBE Y01 902 A 1 HETATM 10 C CAP Y01 . . . E 3 105.414 104.569 112.254 1 20 ? CAP Y01 902 A 1 HETATM 11 C CAQ Y01 . . . E 3 105.433 103.389 113.241 1 20 ? CAQ Y01 902 A 1 HETATM 12 C CBG Y01 . . . E 3 104.67 103.886 114.431 1 20 ? CBG Y01 902 A 1 HETATM 13 C CBI Y01 . . . E 3 104.822 105.404 114.353 1 20 ? CBI Y01 902 A 1 HETATM 14 C CAE Y01 . . . E 3 106.208 105.87 114.794 1 20 ? CAE Y01 902 A 1 HETATM 15 C CAU Y01 . . . E 3 103.757 105.876 115.315 1 20 ? CAU Y01 902 A 1 HETATM 16 C CAS Y01 . . . E 3 103.986 105.394 116.717 1 20 ? CAS Y01 902 A 1 HETATM 17 C CBF Y01 . . . E 3 104.273 103.908 116.88 1 20 ? CBF Y01 902 A 1 HETATM 18 C CBD Y01 . . . E 3 105.109 103.404 115.806 1 20 ? CBD Y01 902 A 1 HETATM 19 C CAK Y01 . . . E 3 105.039 101.952 115.864 1 20 ? CAK Y01 902 A 1 HETATM 20 C CAI Y01 . . . E 3 105.66 101.339 117.076 1 20 ? CAI Y01 902 A 1 HETATM 21 C CAZ Y01 . . . E 3 105.532 102.132 118.202 1 20 ? CAZ Y01 902 A 1 HETATM 22 C CAV Y01 . . . E 3 106.143 101.613 119.432 1 20 ? CAV Y01 902 A 1 HETATM 23 C CBH Y01 . . . E 3 104.864 103.462 118.198 1 20 ? CBH Y01 902 A 1 HETATM 24 C CAD Y01 . . . E 3 106.005 104.378 118.557 1 20 ? CAD Y01 902 A 1 HETATM 25 C CAT Y01 . . . E 3 103.991 103.431 119.357 1 20 ? CAT Y01 902 A 1 HETATM 26 C CAR Y01 . . . E 3 104.621 103.073 120.662 1 20 ? CAR Y01 902 A 1 HETATM 27 C CBC Y01 . . . E 3 105.219 101.68 120.635 1 20 ? CBC Y01 902 A 1 HETATM 28 O OAW Y01 . . . E 3 105.998 101.363 121.774 1 20 ? OAW Y01 902 A 1 HETATM 29 C CAY Y01 . . . E 3 105.386 101.389 123.029 1 20 ? CAY Y01 902 A 1 HETATM 30 O OAG Y01 . . . E 3 105.321 100.302 123.557 1 20 ? OAG Y01 902 A 1 HETATM 31 C CAM Y01 . . . E 3 104.884 102.703 123.623 1 20 ? CAM Y01 902 A 1 HETATM 32 C CAL Y01 . . . E 3 105.163 102.802 125.102 1 20 ? CAL Y01 902 A 1 HETATM 33 C CAX Y01 . . . E 3 106.67 102.684 125.447 1 20 ? CAX Y01 902 A 1 HETATM 34 O OAH Y01 . . . E 3 107.13 101.543 125.667 1 20 ? OAH Y01 902 A 1 HETATM 35 O OAF Y01 . . . E 3 107.302 103.76 125.475 1 20 ? OAF Y01 902 A 1 HETATM 36 H HAA1 Y01 . . . E 3 103.633 106.637 106.893 1 20 ? HAA1 Y01 902 A 1 HETATM 37 H HAA2 Y01 . . . E 3 103.434 106.102 108.534 1 20 ? HAA2 Y01 902 A 1 HETATM 38 H HAA3 Y01 . . . E 3 104.049 107.689 108.186 1 20 ? HAA3 Y01 902 A 1 HETATM 39 H HBA Y01 . . . E 3 105.456 104.994 107.586 1 20 ? HBA Y01 902 A 1 HETATM 40 H HAB1 Y01 . . . E 3 105.701 107.411 106.123 1 20 ? HAB1 Y01 902 A 1 HETATM 41 H HAB2 Y01 . . . E 3 106.816 106.049 106.06 1 20 ? HAB2 Y01 902 A 1 HETATM 42 H HAB3 Y01 . . . E 3 107.13 107.414 107.105 1 20 ? HAB3 Y01 902 A 1 HETATM 43 H HAN1 Y01 . . . E 3 107.38 106.126 108.996 1 20 ? HAN1 Y01 902 A 1 HETATM 44 H HAN2 Y01 . . . E 3 106.076 105.292 109.786 1 20 ? HAN2 Y01 902 A 1 HETATM 45 H HAJ1 Y01 . . . E 3 106.872 107.647 110.653 1 20 ? HAJ1 Y01 902 A 1 HETATM 46 H HAJ2 Y01 . . . E 3 105.959 108.318 109.357 1 20 ? HAJ2 Y01 902 A 1 HETATM 47 H HAO1 Y01 . . . E 3 104.138 106.457 110.482 1 20 ? HAO1 Y01 902 A 1 HETATM 48 H HAO2 Y01 . . . E 3 104.039 108.164 110.632 1 20 ? HAO2 Y01 902 A 1 HETATM 49 H HBB Y01 . . . E 3 105.94 107.354 112.629 1 20 ? HBB Y01 902 A 1 HETATM 50 H HAC1 Y01 . . . E 3 104.339 108.376 114.036 1 20 ? HAC1 Y01 902 A 1 HETATM 51 H HAC2 Y01 . . . E 3 103.842 109.05 112.482 1 20 ? HAC2 Y01 902 A 1 HETATM 52 H HAC3 Y01 . . . E 3 102.937 107.788 113.239 1 20 ? HAC3 Y01 902 A 1 HETATM 53 H HBE Y01 . . . E 3 103.517 105.474 112.627 1 20 ? HBE Y01 902 A 1 HETATM 54 H HAP1 Y01 . . . E 3 106.433 104.88 111.983 1 20 ? HAP1 Y01 902 A 1 HETATM 55 H HAP2 Y01 . . . E 3 105.006 104.245 111.281 1 20 ? HAP2 Y01 902 A 1 HETATM 56 H HAQ1 Y01 . . . E 3 105.018 102.466 112.804 1 20 ? HAQ1 Y01 902 A 1 HETATM 57 H HAQ2 Y01 . . . E 3 106.456 103.048 113.496 1 20 ? HAQ2 Y01 902 A 1 HETATM 58 H HBG Y01 . . . E 3 103.608 103.548 114.301 1 20 ? HBG Y01 902 A 1 HETATM 59 H HBD Y01 . . . E 3 106.179 103.688 115.982 1 20 ? HBD Y01 902 A 1 HETATM 60 H HAE1 Y01 . . . E 3 106.457 106.906 114.591 1 20 ? HAE1 Y01 902 A 1 HETATM 61 H HAE2 Y01 . . . E 3 107.037 105.341 114.312 1 20 ? HAE2 Y01 902 A 1 HETATM 62 H HAE3 Y01 . . . E 3 106.379 105.75 115.871 1 20 ? HAE3 Y01 902 A 1 HETATM 63 H HAU1 Y01 . . . E 3 102.774 105.553 114.97 1 20 ? HAU1 Y01 902 A 1 HETATM 64 H HAU2 Y01 . . . E 3 103.64 106.961 115.275 1 20 ? HAU2 Y01 902 A 1 HETATM 65 H HAS1 Y01 . . . E 3 103.129 105.7 117.332 1 20 ? HAS1 Y01 902 A 1 HETATM 66 H HAS2 Y01 . . . E 3 104.788 106.012 117.146 1 20 ? HAS2 Y01 902 A 1 HETATM 67 H HBF Y01 . . . E 3 103.272 103.413 116.873 1 20 ? HBF Y01 902 A 1 HETATM 68 H HAK1 Y01 . . . E 3 105.479 101.41 115.022 1 20 ? HAK1 Y01 902 A 1 HETATM 69 H HAK2 Y01 . . . E 3 103.957 101.666 115.879 1 20 ? HAK2 Y01 902 A 1 HETATM 70 H HAI Y01 . . . E 3 106.121 100.385 116.95 1 20 ? HAI Y01 902 A 1 HETATM 71 H HAV1 Y01 . . . E 3 106.611 100.654 119.224 1 20 ? HAV1 Y01 902 A 1 HETATM 72 H HAV2 Y01 . . . E 3 107.118 102.133 119.572 1 20 ? HAV2 Y01 902 A 1 HETATM 73 H HBC Y01 . . . E 3 104.489 100.843 120.512 1 20 ? HBC Y01 902 A 1 HETATM 74 H HAD1 Y01 . . . E 3 105.59 105.315 118.885 1 20 ? HAD1 Y01 902 A 1 HETATM 75 H HAD2 Y01 . . . E 3 106.654 104.058 119.358 1 20 ? HAD2 Y01 902 A 1 HETATM 76 H HAD3 Y01 . . . E 3 106.646 104.66 117.722 1 20 ? HAD3 Y01 902 A 1 HETATM 77 H HAT1 Y01 . . . E 3 103.249 102.691 119.216 1 20 ? HAT1 Y01 902 A 1 HETATM 78 H HAT2 Y01 . . . E 3 103.449 104.386 119.428 1 20 ? HAT2 Y01 902 A 1 HETATM 79 H HAR1 Y01 . . . E 3 103.847 103.149 121.437 1 20 ? HAR1 Y01 902 A 1 HETATM 80 H HAR2 Y01 . . . E 3 105.395 103.786 120.974 1 20 ? HAR2 Y01 902 A 1 HETATM 81 H HAM1 Y01 . . . E 3 103.788 102.771 123.458 1 20 ? HAM1 Y01 902 A 1 HETATM 82 H HAM2 Y01 . . . E 3 105.286 103.589 123.109 1 20 ? HAM2 Y01 902 A 1 HETATM 83 H HAL1 Y01 . . . E 3 104.626 102.022 125.671 1 20 ? HAL1 Y01 902 A 1 HETATM 84 H HAL2 Y01 . . . E 3 104.777 103.745 125.517 1 20 ? HAL2 Y01 902 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 84 #