data_8GX4 # _model_server_result.job_id o_5EpzwMOn1nmMi-MDsjDg _model_server_result.datetime_utc '2025-03-06 09:32:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8GX4 # _exptl.entry_id 8GX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8GX4 _cell.length_a 98.34 _cell.length_b 98.34 _cell.length_c 80.41 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 322 n n N HN1 SAM sing 323 n n N HN2 SAM sing 324 n n CA C SAM sing 325 n n CA CB SAM sing 326 n n CA HA SAM sing 327 n n C O SAM doub 328 n n C OXT SAM sing 329 n n CB CG SAM sing 330 n n CB HB1 SAM sing 331 n n CB HB2 SAM sing 332 n n CG SD SAM sing 333 n n CG HG1 SAM sing 334 n n CG HG2 SAM sing 335 n n SD CE SAM sing 336 n n SD C5' SAM sing 337 n n CE HE1 SAM sing 338 n n CE HE2 SAM sing 339 n n CE HE3 SAM sing 340 n n C5' C4' SAM sing 341 n n C5' "H5'1" SAM sing 342 n n C5' "H5'2" SAM sing 343 n n C4' O4' SAM sing 344 n n C4' C3' SAM sing 345 n n C4' H4' SAM sing 346 n n O4' C1' SAM sing 347 n n C3' O3' SAM sing 348 n n C3' C2' SAM sing 349 n n C3' H3' SAM sing 350 n n O3' HO3' SAM sing 351 n n C2' O2' SAM sing 352 n n C2' C1' SAM sing 353 n n C2' H2' SAM sing 354 n n O2' HO2' SAM sing 355 n n C1' N9 SAM sing 356 n n C1' H1' SAM sing 357 n n N9 C8 SAM sing 358 n y N9 C4 SAM sing 359 n y C8 N7 SAM doub 360 n y C8 H8 SAM sing 361 n n N7 C5 SAM sing 362 n y C5 C6 SAM sing 363 n y C5 C4 SAM doub 364 n y C6 N6 SAM sing 365 n n C6 N1 SAM doub 366 n y N6 HN61 SAM sing 367 n n N6 HN62 SAM sing 368 n n N1 C2 SAM sing 369 n y C2 N3 SAM doub 370 n y C2 H2 SAM sing 371 n n N3 C4 SAM sing 372 n y # _atom_sites.entry_id 8GX4 _atom_sites.fract_transf_matrix[1][1] 0.010169 _atom_sites.fract_transf_matrix[1][2] 0.005871 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 501 501 SAM SAM . C 3 GOL A 1 502 701 GOL GOL . D 4 EDO A 1 503 801 EDO EDO . E 4 EDO A 1 504 901 EDO EDO . F 5 PGE A 1 505 1001 PGE PGE . G 4 EDO A 1 506 1101 EDO EDO . H 4 EDO A 1 507 1201 EDO EDO . I 6 HOH A 1 601 102 HOH HOH . I 6 HOH A 2 602 23 HOH HOH . I 6 HOH A 3 603 114 HOH HOH . I 6 HOH A 4 604 122 HOH HOH . I 6 HOH A 5 605 51 HOH HOH . I 6 HOH A 6 606 32 HOH HOH . I 6 HOH A 7 607 127 HOH HOH . I 6 HOH A 8 608 105 HOH HOH . I 6 HOH A 9 609 96 HOH HOH . I 6 HOH A 10 610 117 HOH HOH . I 6 HOH A 11 611 31 HOH HOH . I 6 HOH A 12 612 116 HOH HOH . I 6 HOH A 13 613 11 HOH HOH . I 6 HOH A 14 614 171 HOH HOH . I 6 HOH A 15 615 50 HOH HOH . I 6 HOH A 16 616 123 HOH HOH . I 6 HOH A 17 617 10 HOH HOH . I 6 HOH A 18 618 24 HOH HOH . I 6 HOH A 19 619 158 HOH HOH . I 6 HOH A 20 620 75 HOH HOH . I 6 HOH A 21 621 38 HOH HOH . I 6 HOH A 22 622 5 HOH HOH . I 6 HOH A 23 623 46 HOH HOH . I 6 HOH A 24 624 12 HOH HOH . I 6 HOH A 25 625 7 HOH HOH . I 6 HOH A 26 626 21 HOH HOH . I 6 HOH A 27 627 109 HOH HOH . I 6 HOH A 28 628 4 HOH HOH . I 6 HOH A 29 629 36 HOH HOH . I 6 HOH A 30 630 137 HOH HOH . I 6 HOH A 31 631 29 HOH HOH . I 6 HOH A 32 632 15 HOH HOH . I 6 HOH A 33 633 151 HOH HOH . I 6 HOH A 34 634 27 HOH HOH . I 6 HOH A 35 635 1 HOH HOH . I 6 HOH A 36 636 68 HOH HOH . I 6 HOH A 37 637 6 HOH HOH . I 6 HOH A 38 638 69 HOH HOH . I 6 HOH A 39 639 39 HOH HOH . I 6 HOH A 40 640 33 HOH HOH . I 6 HOH A 41 641 22 HOH HOH . I 6 HOH A 42 642 99 HOH HOH . I 6 HOH A 43 643 2 HOH HOH . I 6 HOH A 44 644 14 HOH HOH . I 6 HOH A 45 645 28 HOH HOH . I 6 HOH A 46 646 54 HOH HOH . I 6 HOH A 47 647 156 HOH HOH . I 6 HOH A 48 648 52 HOH HOH . I 6 HOH A 49 649 112 HOH HOH . I 6 HOH A 50 650 35 HOH HOH . I 6 HOH A 51 651 48 HOH HOH . I 6 HOH A 52 652 125 HOH HOH . I 6 HOH A 53 653 120 HOH HOH . I 6 HOH A 54 654 37 HOH HOH . I 6 HOH A 55 655 129 HOH HOH . I 6 HOH A 56 656 47 HOH HOH . I 6 HOH A 57 657 82 HOH HOH . I 6 HOH A 58 658 83 HOH HOH . I 6 HOH A 59 659 49 HOH HOH . I 6 HOH A 60 660 179 HOH HOH . I 6 HOH A 61 661 73 HOH HOH . I 6 HOH A 62 662 104 HOH HOH . I 6 HOH A 63 663 92 HOH HOH . I 6 HOH A 64 664 17 HOH HOH . I 6 HOH A 65 665 57 HOH HOH . I 6 HOH A 66 666 8 HOH HOH . I 6 HOH A 67 667 67 HOH HOH . I 6 HOH A 68 668 26 HOH HOH . I 6 HOH A 69 669 19 HOH HOH . I 6 HOH A 70 670 95 HOH HOH . I 6 HOH A 71 671 62 HOH HOH . I 6 HOH A 72 672 18 HOH HOH . I 6 HOH A 73 673 45 HOH HOH . I 6 HOH A 74 674 64 HOH HOH . I 6 HOH A 75 675 77 HOH HOH . I 6 HOH A 76 676 181 HOH HOH . I 6 HOH A 77 677 162 HOH HOH . I 6 HOH A 78 678 139 HOH HOH . I 6 HOH A 79 679 66 HOH HOH . I 6 HOH A 80 680 128 HOH HOH . I 6 HOH A 81 681 63 HOH HOH . I 6 HOH A 82 682 174 HOH HOH . I 6 HOH A 83 683 53 HOH HOH . I 6 HOH A 84 684 91 HOH HOH . I 6 HOH A 85 685 79 HOH HOH . I 6 HOH A 86 686 71 HOH HOH . I 6 HOH A 87 687 20 HOH HOH . I 6 HOH A 88 688 100 HOH HOH . I 6 HOH A 89 689 143 HOH HOH . I 6 HOH A 90 690 98 HOH HOH . I 6 HOH A 91 691 3 HOH HOH . I 6 HOH A 92 692 65 HOH HOH . I 6 HOH A 93 693 43 HOH HOH . I 6 HOH A 94 694 118 HOH HOH . I 6 HOH A 95 695 175 HOH HOH . I 6 HOH A 96 696 60 HOH HOH . I 6 HOH A 97 697 130 HOH HOH . I 6 HOH A 98 698 106 HOH HOH . I 6 HOH A 99 699 176 HOH HOH . I 6 HOH A 100 700 142 HOH HOH . I 6 HOH A 101 701 145 HOH HOH . I 6 HOH A 102 702 41 HOH HOH . I 6 HOH A 103 703 9 HOH HOH . I 6 HOH A 104 704 16 HOH HOH . I 6 HOH A 105 705 72 HOH HOH . I 6 HOH A 106 706 25 HOH HOH . I 6 HOH A 107 707 113 HOH HOH . I 6 HOH A 108 708 61 HOH HOH . I 6 HOH A 109 709 81 HOH HOH . I 6 HOH A 110 710 152 HOH HOH . I 6 HOH A 111 711 164 HOH HOH . I 6 HOH A 112 712 144 HOH HOH . I 6 HOH A 113 713 169 HOH HOH . I 6 HOH A 114 714 59 HOH HOH . I 6 HOH A 115 715 124 HOH HOH . I 6 HOH A 116 716 30 HOH HOH . I 6 HOH A 117 717 153 HOH HOH . I 6 HOH A 118 718 121 HOH HOH . I 6 HOH A 119 719 140 HOH HOH . I 6 HOH A 120 720 180 HOH HOH . I 6 HOH A 121 721 172 HOH HOH . I 6 HOH A 122 722 119 HOH HOH . I 6 HOH A 123 723 163 HOH HOH . I 6 HOH A 124 724 135 HOH HOH . I 6 HOH A 125 725 154 HOH HOH . I 6 HOH A 126 726 173 HOH HOH . I 6 HOH A 127 727 107 HOH HOH . I 6 HOH A 128 728 131 HOH HOH . I 6 HOH A 129 729 76 HOH HOH . I 6 HOH A 130 730 178 HOH HOH . I 6 HOH A 131 731 141 HOH HOH . I 6 HOH A 132 732 93 HOH HOH . I 6 HOH A 133 733 87 HOH HOH . I 6 HOH A 134 734 146 HOH HOH . I 6 HOH A 135 735 136 HOH HOH . I 6 HOH A 136 736 165 HOH HOH . I 6 HOH A 137 737 115 HOH HOH . I 6 HOH A 138 738 74 HOH HOH . I 6 HOH A 139 739 126 HOH HOH . I 6 HOH A 140 740 147 HOH HOH . I 6 HOH A 141 741 166 HOH HOH . I 6 HOH A 142 742 168 HOH HOH . I 6 HOH A 143 743 42 HOH HOH . I 6 HOH A 144 744 155 HOH HOH . I 6 HOH A 145 745 148 HOH HOH . I 6 HOH A 146 746 110 HOH HOH . I 6 HOH A 147 747 157 HOH HOH . I 6 HOH A 148 748 150 HOH HOH . I 6 HOH A 149 749 56 HOH HOH . I 6 HOH A 150 750 97 HOH HOH . I 6 HOH A 151 751 161 HOH HOH . I 6 HOH A 152 752 132 HOH HOH . I 6 HOH A 153 753 34 HOH HOH . I 6 HOH A 154 754 40 HOH HOH . I 6 HOH A 155 755 101 HOH HOH . I 6 HOH A 156 756 94 HOH HOH . I 6 HOH A 157 757 133 HOH HOH . I 6 HOH A 158 758 149 HOH HOH . I 6 HOH A 159 759 103 HOH HOH . I 6 HOH A 160 760 160 HOH HOH . I 6 HOH A 161 761 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 34.032 -23.464 -2.79 1 35.2 ? N SAM 501 A 1 HETATM 2 C CA SAM . . . B 2 34.61 -23.222 -4.126 1 44.98 ? CA SAM 501 A 1 HETATM 3 C C SAM . . . B 2 33.767 -22.238 -4.935 1 43.47 ? C SAM 501 A 1 HETATM 4 O O SAM . . . B 2 32.833 -21.629 -4.414 1 40.97 ? O SAM 501 A 1 HETATM 5 O OXT SAM . . . B 2 33.992 -22.036 -6.127 1 50.04 ? OXT SAM 501 A 1 HETATM 6 C CB SAM . . . B 2 34.761 -24.514 -4.929 1 40.18 ? CB SAM 501 A 1 HETATM 7 C CG SAM . . . B 2 33.503 -25.367 -5.089 1 42.87 ? CG SAM 501 A 1 HETATM 8 S SD SAM . . . B 2 33.743 -26.83 -6.162 1 50.13 ? SD SAM 501 A 1 HETATM 9 C CE SAM . . . B 2 32.076 -26.943 -6.826 1 46.45 ? CE SAM 501 A 1 HETATM 10 C C5' SAM . . . B 2 33.785 -28.192 -4.967 1 41 ? C5' SAM 501 A 1 HETATM 11 C C4' SAM . . . B 2 35.141 -28.239 -4.261 1 42.41 ? C4' SAM 501 A 1 HETATM 12 O O4' SAM . . . B 2 35.141 -29.249 -3.278 1 43.85 ? O4' SAM 501 A 1 HETATM 13 C C3' SAM . . . B 2 36.316 -28.561 -5.184 1 42.83 ? C3' SAM 501 A 1 HETATM 14 O O3' SAM . . . B 2 37.351 -27.627 -4.955 1 39.98 ? O3' SAM 501 A 1 HETATM 15 C C2' SAM . . . B 2 36.78 -29.95 -4.765 1 41.29 ? C2' SAM 501 A 1 HETATM 16 O O2' SAM . . . B 2 38.171 -30.15 -4.871 1 37.6 ? O2' SAM 501 A 1 HETATM 17 C C1' SAM . . . B 2 36.384 -29.926 -3.303 1 40.65 ? C1' SAM 501 A 1 HETATM 18 N N9 SAM . . . B 2 36.192 -31.248 -2.706 1 38.85 ? N9 SAM 501 A 1 HETATM 19 C C8 SAM . . . B 2 35.489 -32.296 -3.243 1 42.16 ? C8 SAM 501 A 1 HETATM 20 N N7 SAM . . . B 2 35.515 -33.319 -2.356 1 36.35 ? N7 SAM 501 A 1 HETATM 21 C C5 SAM . . . B 2 36.211 -32.914 -1.269 1 37.42 ? C5 SAM 501 A 1 HETATM 22 C C6 SAM . . . B 2 36.534 -33.558 -0.092 1 36.57 ? C6 SAM 501 A 1 HETATM 23 N N6 SAM . . . B 2 36.123 -34.809 0.091 1 37 ? N6 SAM 501 A 1 HETATM 24 N N1 SAM . . . B 2 37.278 -32.9 0.873 1 36.95 ? N1 SAM 501 A 1 HETATM 25 C C2 SAM . . . B 2 37.692 -31.604 0.668 1 37.66 ? C2 SAM 501 A 1 HETATM 26 N N3 SAM . . . B 2 37.373 -30.957 -0.515 1 36.46 ? N3 SAM 501 A 1 HETATM 27 C C4 SAM . . . B 2 36.64 -31.613 -1.466 1 39.04 ? C4 SAM 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #