data_8GXD # _model_server_result.job_id LHCuaM2hDvRSFLDY2Nfq4A _model_server_result.datetime_utc '2025-07-07 23:28:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gxd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 8GXD # _exptl.entry_id 8GXD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GXD _cell.length_a 152.99 _cell.length_b 152.99 _cell.length_c 132.02 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GXD _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8GXD _atom_sites.fract_transf_matrix[1][1] 0.006536 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006536 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007575 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 2 GOL A 1 402 2 GOL GOL . D 2 GOL A 1 403 3 GOL GOL . E 3 CA A 1 404 1 CA CA . F 3 CA A 1 405 2 CA CA . G 3 CA A 1 406 3 CA CA . H 3 CA A 1 407 4 CA CA . I 4 HOH A 1 501 31 HOH HOH . I 4 HOH A 2 502 20 HOH HOH . I 4 HOH A 3 503 9 HOH HOH . I 4 HOH A 4 504 13 HOH HOH . I 4 HOH A 5 505 17 HOH HOH . I 4 HOH A 6 506 24 HOH HOH . I 4 HOH A 7 507 27 HOH HOH . I 4 HOH A 8 508 2 HOH HOH . I 4 HOH A 9 509 7 HOH HOH . I 4 HOH A 10 510 19 HOH HOH . I 4 HOH A 11 511 15 HOH HOH . I 4 HOH A 12 512 30 HOH HOH . I 4 HOH A 13 513 21 HOH HOH . I 4 HOH A 14 514 6 HOH HOH . I 4 HOH A 15 515 8 HOH HOH . I 4 HOH A 16 516 10 HOH HOH . I 4 HOH A 17 517 16 HOH HOH . I 4 HOH A 18 518 11 HOH HOH . I 4 HOH A 19 519 4 HOH HOH . I 4 HOH A 20 520 3 HOH HOH . I 4 HOH A 21 521 14 HOH HOH . I 4 HOH A 22 522 23 HOH HOH . I 4 HOH A 23 523 25 HOH HOH . I 4 HOH A 24 524 22 HOH HOH . I 4 HOH A 25 525 18 HOH HOH . I 4 HOH A 26 526 12 HOH HOH . I 4 HOH A 27 527 5 HOH HOH . I 4 HOH A 28 528 26 HOH HOH . I 4 HOH A 29 529 29 HOH HOH . I 4 HOH A 30 530 1 HOH HOH . I 4 HOH A 31 531 28 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 14.454 _atom_site.Cartn_y 37.882 _atom_site.Cartn_z 4.746 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 405 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #