data_8GXF # _model_server_result.job_id UydSbk718xzWOtOL9QAsuA _model_server_result.datetime_utc '2024-11-28 01:07:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gxf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 8GXF # _exptl.entry_id 8GXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.866 _cell.angle_gamma 90 _cell.entry_id 8GXF _cell.length_a 43.889 _cell.length_b 99.013 _cell.length_c 98.822 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 8GXF _atom_sites.fract_transf_matrix[1][1] 0.022785 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004787 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 COA B 1 201 2 COA COA . F 2 COA A 1 201 1 COA COA . G 2 COA C 1 201 3 COA COA . H 2 COA D 1 201 4 COA COA . I 3 HOH B 1 301 7 HOH HOH . I 3 HOH B 2 302 19 HOH HOH . I 3 HOH B 3 303 36 HOH HOH . I 3 HOH B 4 304 3 HOH HOH . I 3 HOH B 5 305 37 HOH HOH . I 3 HOH B 6 306 9 HOH HOH . J 3 HOH A 1 301 24 HOH HOH . J 3 HOH A 2 302 22 HOH HOH . J 3 HOH A 3 303 39 HOH HOH . J 3 HOH A 4 304 32 HOH HOH . J 3 HOH A 5 305 38 HOH HOH . J 3 HOH A 6 306 20 HOH HOH . J 3 HOH A 7 307 21 HOH HOH . J 3 HOH A 8 308 40 HOH HOH . J 3 HOH A 9 309 41 HOH HOH . J 3 HOH A 10 310 28 HOH HOH . J 3 HOH A 11 311 42 HOH HOH . J 3 HOH A 12 312 10 HOH HOH . J 3 HOH A 13 313 12 HOH HOH . K 3 HOH C 1 301 8 HOH HOH . K 3 HOH C 2 302 30 HOH HOH . K 3 HOH C 3 303 33 HOH HOH . K 3 HOH C 4 304 2 HOH HOH . K 3 HOH C 5 305 6 HOH HOH . K 3 HOH C 6 306 5 HOH HOH . K 3 HOH C 7 307 15 HOH HOH . K 3 HOH C 8 308 1 HOH HOH . K 3 HOH C 9 309 4 HOH HOH . K 3 HOH C 10 310 11 HOH HOH . K 3 HOH C 11 311 23 HOH HOH . L 3 HOH D 1 301 26 HOH HOH . L 3 HOH D 2 302 13 HOH HOH . L 3 HOH D 3 303 18 HOH HOH . L 3 HOH D 4 304 27 HOH HOH . L 3 HOH D 5 305 34 HOH HOH . L 3 HOH D 6 306 16 HOH HOH . L 3 HOH D 7 307 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . E 2 -6.258 -9.735 28.791 1 39.33 ? N1A COA 201 B 1 HETATM 2 C C2A COA . . . E 2 -5.583 -8.767 29.432 1 38.59 ? C2A COA 201 B 1 HETATM 3 N N3A COA . . . E 2 -4.351 -9.024 29.913 1 39.74 ? N3A COA 201 B 1 HETATM 4 C C4A COA . . . E 2 -3.82 -10.263 29.747 1 45.24 ? C4A COA 201 B 1 HETATM 5 C C5A COA . . . E 2 -4.484 -11.232 29.108 1 44.81 ? C5A COA 201 B 1 HETATM 6 C C6A COA . . . E 2 -5.728 -10.955 28.623 1 35.75 ? C6A COA 201 B 1 HETATM 7 N N6A COA . . . E 2 -6.804 -11.58 27.923 1 41.78 ? N6A COA 201 B 1 HETATM 8 N N7A COA . . . E 2 -3.701 -12.342 29.098 1 49.82 ? N7A COA 201 B 1 HETATM 9 C C8A COA . . . E 2 -2.549 -12.06 29.733 1 42.73 ? C8A COA 201 B 1 HETATM 10 N N9A COA . . . E 2 -2.645 -10.779 30.132 1 44.37 ? N9A COA 201 B 1 HETATM 11 C C1B COA . . . E 2 -1.6 -10.132 30.802 1 37.36 ? C1B COA 201 B 1 HETATM 12 C C2B COA . . . E 2 -1.06 -10.891 31.74 1 39.73 ? C2B COA 201 B 1 HETATM 13 O O2B COA . . . E 2 -1.936 -10.929 32.947 1 42.23 ? O2B COA 201 B 1 HETATM 14 C C3B COA . . . E 2 0.204 -10.052 31.966 1 42.05 ? C3B COA 201 B 1 HETATM 15 O O3B COA . . . E 2 -0.141 -8.882 32.525 1 46.65 ? O3B COA 201 B 1 HETATM 16 P P3B COA . . . E 2 -0.333 -8.763 34.138 1 38.16 ? P3B COA 201 B 1 HETATM 17 O O7A COA . . . E 2 1.013 -8.714 34.773 1 42.53 ? O7A COA 201 B 1 HETATM 18 O O8A COA . . . E 2 -1.125 -7.505 34.37 1 34.68 ? O8A COA 201 B 1 HETATM 19 O O9A COA . . . E 2 -1.047 -9.941 34.68 1 42.32 ? O9A COA 201 B 1 HETATM 20 C C4B COA . . . E 2 0.693 -9.765 30.479 1 37.2 ? C4B COA 201 B 1 HETATM 21 O O4B COA . . . E 2 -0.374 -9.922 29.747 1 42.74 ? O4B COA 201 B 1 HETATM 22 C C5B COA . . . E 2 1.763 -10.736 30.025 1 28.4 ? C5B COA 201 B 1 HETATM 23 O O5B COA . . . E 2 2.472 -11.16 31.171 1 24.95 ? O5B COA 201 B 1 HETATM 24 P P1A COA . . . E 2 4.048 -11.347 31.027 1 28.35 ? P1A COA 201 B 1 HETATM 25 O O1A COA . . . E 2 4.535 -12.462 31.879 1 20.38 ? O1A COA 201 B 1 HETATM 26 O O2A COA . . . E 2 4.662 -10.055 31.388 1 35.49 ? O2A COA 201 B 1 HETATM 27 O O3A COA . . . E 2 4.452 -11.783 29.467 1 31.14 ? O3A COA 201 B 1 HETATM 28 P P2A COA . . . E 2 4.484 -13.383 29.068 1 22.29 ? P2A COA 201 B 1 HETATM 29 O O4A COA . . . E 2 5.612 -13.985 29.79 1 19.5 ? O4A COA 201 B 1 HETATM 30 O O5A COA . . . E 2 3.172 -13.982 29.534 1 22.95 ? O5A COA 201 B 1 HETATM 31 O O6A COA . . . E 2 4.601 -13.591 27.441 1 28.94 ? O6A COA 201 B 1 HETATM 32 C CBP COA . . . E 2 4.33 -14.361 25.235 1 19.44 ? CBP COA 201 B 1 HETATM 33 C CCP COA . . . E 2 3.807 -14.54 26.697 1 18.48 ? CCP COA 201 B 1 HETATM 34 C CDP COA . . . E 2 3.572 -13.062 24.733 1 24.79 ? CDP COA 201 B 1 HETATM 35 C CEP COA . . . E 2 5.883 -14.058 25.405 1 15.54 ? CEP COA 201 B 1 HETATM 36 C CAP COA . . . E 2 4.216 -15.649 24.304 1 26.66 ? CAP COA 201 B 1 HETATM 37 O OAP COA . . . E 2 3.917 -16.692 25.18 1 24.23 ? OAP COA 201 B 1 HETATM 38 C C9P COA . . . E 2 3.263 -15.766 23.056 1 29.46 ? C9P COA 201 B 1 HETATM 39 O O9P COA . . . E 2 2.566 -16.754 23.016 1 25.08 ? O9P COA 201 B 1 HETATM 40 N N8P COA . . . E 2 3.097 -14.865 21.816 1 21.37 ? N8P COA 201 B 1 HETATM 41 C C7P COA . . . E 2 3.799 -13.551 21.469 1 14.37 ? C7P COA 201 B 1 HETATM 42 C C6P COA . . . E 2 3.618 -13.177 19.957 1 24.97 ? C6P COA 201 B 1 HETATM 43 C C5P COA . . . E 2 4.306 -11.788 19.641 1 28.89 ? C5P COA 201 B 1 HETATM 44 O O5P COA . . . E 2 3.681 -10.839 19.533 1 31.47 ? O5P COA 201 B 1 HETATM 45 N N4P COA . . . E 2 5.71 -11.701 19.495 1 24.62 ? N4P COA 201 B 1 HETATM 46 C C3P COA . . . E 2 6.349 -10.403 19.227 1 20.24 ? C3P COA 201 B 1 HETATM 47 C C2P COA . . . E 2 6.333 -9.591 20.514 1 21.75 ? C2P COA 201 B 1 HETATM 48 S S1P COA . . . E 2 7.966 -9.559 21.237 1 24.78 ? S1P COA 201 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #