data_8GXF
#
_model_server_result.job_id            rrq8jWsiB30eq8h5no36bg 
_model_server_result.datetime_utc      '2024-11-24 07:34:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gxf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    8GXF 
#
_exptl.entry_id    8GXF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              767.534 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COENZYME A' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.866 
_cell.angle_gamma         90 
_cell.entry_id            8GXF 
_cell.length_a            43.889 
_cell.length_b            99.013 
_cell.length_c            98.822 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GXF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H36 N7 O16 P3 S' 
_chem_comp.formula_weight    767.534 
_chem_comp.id                COA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A COA sing 70 n y 
N1A C6A COA doub 71 n y 
C2A N3A COA doub 72 n y 
C2A H2A COA sing 73 n n 
N3A C4A COA sing 74 n y 
C4A C5A COA doub 75 n y 
C4A N9A COA sing 76 n y 
C5A C6A COA sing 77 n y 
C5A N7A COA sing 78 n y 
C6A N6A COA sing 79 n n 
N6A H61A COA sing 80 n n 
N6A H62A COA sing 81 n n 
N7A C8A COA doub 82 n y 
C8A N9A COA sing 83 n y 
C8A H8A COA sing 84 n n 
N9A C1B COA sing 85 n n 
C1B C2B COA sing 86 n n 
C1B O4B COA sing 87 n n 
C1B H1B COA sing 88 n n 
C2B O2B COA sing 89 n n 
C2B C3B COA sing 90 n n 
C2B H2B COA sing 91 n n 
O2B HO2A COA sing 92 n n 
C3B O3B COA sing 93 n n 
C3B C4B COA sing 94 n n 
C3B H3B COA sing 95 n n 
O3B P3B COA sing 96 n n 
P3B O7A COA doub 97 n n 
P3B O8A COA sing 98 n n 
P3B O9A COA sing 99 n n 
O8A HOA8 COA sing 100 n n 
O9A HOA9 COA sing 101 n n 
C4B O4B COA sing 102 n n 
C4B C5B COA sing 103 n n 
C4B H4B COA sing 104 n n 
C5B O5B COA sing 105 n n 
C5B H51A COA sing 106 n n 
C5B H52A COA sing 107 n n 
O5B P1A COA sing 108 n n 
P1A O1A COA doub 109 n n 
P1A O2A COA sing 110 n n 
P1A O3A COA sing 111 n n 
O2A HOA2 COA sing 112 n n 
O3A P2A COA sing 113 n n 
P2A O4A COA doub 114 n n 
P2A O5A COA sing 115 n n 
P2A O6A COA sing 116 n n 
O5A HOA5 COA sing 117 n n 
O6A CCP COA sing 118 n n 
CBP CCP COA sing 119 n n 
CBP CDP COA sing 120 n n 
CBP CEP COA sing 121 n n 
CBP CAP COA sing 122 n n 
CCP H121 COA sing 123 n n 
CCP H122 COA sing 124 n n 
CDP H131 COA sing 125 n n 
CDP H132 COA sing 126 n n 
CDP H133 COA sing 127 n n 
CEP H141 COA sing 128 n n 
CEP H142 COA sing 129 n n 
CEP H143 COA sing 130 n n 
CAP OAP COA sing 131 n n 
CAP C9P COA sing 132 n n 
CAP H10 COA sing 133 n n 
OAP HO1 COA sing 134 n n 
C9P O9P COA doub 135 n n 
C9P N8P COA sing 136 n n 
N8P C7P COA sing 137 n n 
N8P HN8 COA sing 138 n n 
C7P C6P COA sing 139 n n 
C7P H71 COA sing 140 n n 
C7P H72 COA sing 141 n n 
C6P C5P COA sing 142 n n 
C6P H61 COA sing 143 n n 
C6P H62 COA sing 144 n n 
C5P O5P COA doub 145 n n 
C5P N4P COA sing 146 n n 
N4P C3P COA sing 147 n n 
N4P HN4 COA sing 148 n n 
C3P C2P COA sing 149 n n 
C3P H31 COA sing 150 n n 
C3P H32 COA sing 151 n n 
C2P S1P COA sing 152 n n 
C2P H21 COA sing 153 n n 
C2P H22 COA sing 154 n n 
S1P HS1 COA sing 155 n n 
#
_atom_sites.entry_id                     8GXF 
_atom_sites.fract_transf_matrix[1][1]    0.022785 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004787 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0101 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01034 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 COA B 1 201 2 COA COA . 
F 2 COA A 1 201 1 COA COA . 
G 2 COA C 1 201 3 COA COA . 
H 2 COA D 1 201 4 COA COA . 
I 3 HOH B 1 301 7 HOH HOH . 
I 3 HOH B 2 302 19 HOH HOH . 
I 3 HOH B 3 303 36 HOH HOH . 
I 3 HOH B 4 304 3 HOH HOH . 
I 3 HOH B 5 305 37 HOH HOH . 
I 3 HOH B 6 306 9 HOH HOH . 
J 3 HOH A 1 301 24 HOH HOH . 
J 3 HOH A 2 302 22 HOH HOH . 
J 3 HOH A 3 303 39 HOH HOH . 
J 3 HOH A 4 304 32 HOH HOH . 
J 3 HOH A 5 305 38 HOH HOH . 
J 3 HOH A 6 306 20 HOH HOH . 
J 3 HOH A 7 307 21 HOH HOH . 
J 3 HOH A 8 308 40 HOH HOH . 
J 3 HOH A 9 309 41 HOH HOH . 
J 3 HOH A 10 310 28 HOH HOH . 
J 3 HOH A 11 311 42 HOH HOH . 
J 3 HOH A 12 312 10 HOH HOH . 
J 3 HOH A 13 313 12 HOH HOH . 
K 3 HOH C 1 301 8 HOH HOH . 
K 3 HOH C 2 302 30 HOH HOH . 
K 3 HOH C 3 303 33 HOH HOH . 
K 3 HOH C 4 304 2 HOH HOH . 
K 3 HOH C 5 305 6 HOH HOH . 
K 3 HOH C 6 306 5 HOH HOH . 
K 3 HOH C 7 307 15 HOH HOH . 
K 3 HOH C 8 308 1 HOH HOH . 
K 3 HOH C 9 309 4 HOH HOH . 
K 3 HOH C 10 310 11 HOH HOH . 
K 3 HOH C 11 311 23 HOH HOH . 
L 3 HOH D 1 301 26 HOH HOH . 
L 3 HOH D 2 302 13 HOH HOH . 
L 3 HOH D 3 303 18 HOH HOH . 
L 3 HOH D 4 304 27 HOH HOH . 
L 3 HOH D 5 305 34 HOH HOH . 
L 3 HOH D 6 306 16 HOH HOH . 
L 3 HOH D 7 307 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A COA . . . H 2 13.252 0.187 41.585 1 28.56 ? N1A COA 201 D 1 
HETATM 2 C C2A COA . . . H 2 12.065 0.694 41.945 1 32.13 ? C2A COA 201 D 1 
HETATM 3 N N3A COA . . . H 2 11.798 0.891 43.246 1 35.85 ? N3A COA 201 D 1 
HETATM 4 C C4A COA . . . H 2 12.734 0.579 44.178 1 34.73 ? C4A COA 201 D 1 
HETATM 5 C C5A COA . . . H 2 13.918 0.078 43.82 1 32.21 ? C5A COA 201 D 1 
HETATM 6 C C6A COA . . . H 2 14.176 -0.122 42.505 1 31.48 ? C6A COA 201 D 1 
HETATM 7 N N6A COA . . . H 2 15.209 -0.603 41.649 1 33.81 ? N6A COA 201 D 1 
HETATM 8 N N7A COA . . . H 2 14.636 -0.139 44.931 1 36.77 ? N7A COA 201 D 1 
HETATM 9 C C8A COA . . . H 2 13.888 0.233 45.986 1 38.9 ? C8A COA 201 D 1 
HETATM 10 N N9A COA . . . H 2 12.714 0.674 45.515 1 36.69 ? N9A COA 201 D 1 
HETATM 11 C C1B COA . . . H 2 11.706 1.153 46.386 1 34.7 ? C1B COA 201 D 1 
HETATM 12 C C2B COA . . . H 2 11.775 0.508 47.546 1 32.01 ? C2B COA 201 D 1 
HETATM 13 O O2B COA . . . H 2 10.949 -0.714 47.435 1 43.13 ? O2B COA 201 D 1 
HETATM 14 C C3B COA . . . H 2 11.107 1.495 48.496 1 27.49 ? C3B COA 201 D 1 
HETATM 15 O O3B COA . . . H 2 9.785 1.422 48.317 1 23.66 ? O3B COA 201 D 1 
HETATM 16 P P3B COA . . . H 2 8.933 0.796 49.558 1 25.98 ? P3B COA 201 D 1 
HETATM 17 O O7A COA . . . H 2 9.376 1.476 50.813 1 20.5 ? O7A COA 201 D 1 
HETATM 18 O O8A COA . . . H 2 7.466 1.004 49.292 1 30.75 ? O8A COA 201 D 1 
HETATM 19 O O9A COA . . . H 2 9.175 -0.656 49.703 1 35.8 ? O9A COA 201 D 1 
HETATM 20 C C4B COA . . . H 2 11.671 2.891 48.006 1 27.97 ? C4B COA 201 D 1 
HETATM 21 O O4B COA . . . H 2 11.956 2.728 46.745 1 31.49 ? O4B COA 201 D 1 
HETATM 22 C C5B COA . . . H 2 12.947 3.244 48.74 1 29.65 ? C5B COA 201 D 1 
HETATM 23 O O5B COA . . . H 2 12.789 3.023 50.135 1 40.98 ? O5B COA 201 D 1 
HETATM 24 P P1A COA . . . H 2 13.11 4.287 51.048 1 22.54 ? P1A COA 201 D 1 
HETATM 25 O O1A COA . . . H 2 13.538 3.885 52.416 1 28.32 ? O1A COA 201 D 1 
HETATM 26 O O2A COA . . . H 2 11.828 5.033 51.081 1 16 ? O2A COA 201 D 1 
HETATM 27 O O3A COA . . . H 2 14.353 5.016 50.238 1 18.91 ? O3A COA 201 D 1 
HETATM 28 P P2A COA . . . H 2 15.86 5.325 50.85 1 28.52 ? P2A COA 201 D 1 
HETATM 29 O O4A COA . . . H 2 15.85 6.797 50.906 1 31.81 ? O4A COA 201 D 1 
HETATM 30 O O5A COA . . . H 2 15.995 4.741 52.255 1 19.89 ? O5A COA 201 D 1 
HETATM 31 O O6A COA . . . H 2 17.184 4.913 49.911 1 35.02 ? O6A COA 201 D 1 
HETATM 32 C CBP COA . . . H 2 18.34 6.921 48.6 1 21.9 ? CBP COA 201 D 1 
HETATM 33 C CCP COA . . . H 2 17.596 5.512 48.636 1 28.18 ? CCP COA 201 D 1 
HETATM 34 C CDP COA . . . H 2 17.367 7.93 47.868 1 30.7 ? CDP COA 201 D 1 
HETATM 35 C CEP COA . . . H 2 18.559 7.524 50.052 1 22.66 ? CEP COA 201 D 1 
HETATM 36 C CAP COA . . . H 2 19.808 6.852 47.982 1 22.95 ? CAP COA 201 D 1 
HETATM 37 O OAP COA . . . H 2 20.193 5.552 48.177 1 22.71 ? OAP COA 201 D 1 
HETATM 38 C C9P COA . . . H 2 20.187 7.244 46.514 1 32.45 ? C9P COA 201 D 1 
HETATM 39 O O9P COA . . . H 2 20.893 6.462 45.888 1 22.28 ? O9P COA 201 D 1 
HETATM 40 N N8P COA . . . H 2 19.764 8.603 45.898 1 32.94 ? N8P COA 201 D 1 
HETATM 41 C C7P COA . . . H 2 20.039 9.175 44.493 1 19.66 ? C7P COA 201 D 1 
HETATM 42 C C6P COA . . . H 2 20.25 10.735 44.631 1 27.94 ? C6P COA 201 D 1 
HETATM 43 C C5P COA . . . H 2 19.234 11.82 44.018 1 22.74 ? C5P COA 201 D 1 
HETATM 44 O O5P COA . . . H 2 19.313 12.216 42.951 1 26.84 ? O5P COA 201 D 1 
HETATM 45 N N4P COA . . . H 2 18.235 12.391 44.814 1 20.56 ? N4P COA 201 D 1 
HETATM 46 C C3P COA . . . H 2 17.295 13.394 44.297 1 18.96 ? C3P COA 201 D 1 
HETATM 47 C C2P COA . . . H 2 16.31 13.857 45.379 1 23.88 ? C2P COA 201 D 1 
HETATM 48 S S1P COA . . . H 2 16.858 13.762 47.095 1 39.21 ? S1P COA 201 D 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#