data_8GY1 # _model_server_result.job_id 2zGi1SfVZBdP3wC-MXcw-g _model_server_result.datetime_utc '2024-10-10 02:27:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8GY1 # _exptl.entry_id 8GY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GY1 _cell.length_a 148.212 _cell.length_b 148.212 _cell.length_c 148.212 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 0 296.424 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_575 x,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 296.424 0 5 'crystal symmetry operation' 5_564 z,x+1,y-1 0 0 1 1 0 0 0 1 0 0 148.212 -148.212 6 'crystal symmetry operation' 6_566 z,-x+1,-y+1 0 0 1 -1 0 0 0 -1 0 0 148.212 148.212 7 'crystal symmetry operation' 7_564 -z,-x+1,y-1 0 0 -1 -1 0 0 0 1 0 0 148.212 -148.212 8 'crystal symmetry operation' 8_566 -z,x+1,-y+1 0 0 -1 1 0 0 0 -1 0 0 148.212 148.212 9 'crystal symmetry operation' 9_465 y-1,z+1,x 0 1 0 0 0 1 1 0 0 -148.212 148.212 0 10 'crystal symmetry operation' 10_665 -y+1,z+1,-x 0 -1 0 0 0 1 -1 0 0 148.212 148.212 0 11 'crystal symmetry operation' 11_465 y-1,-z+1,-x 0 1 0 0 0 -1 -1 0 0 -148.212 148.212 0 12 'crystal symmetry operation' 12_665 -y+1,-z+1,x 0 -1 0 0 0 -1 1 0 0 148.212 148.212 0 13 'crystal symmetry operation' 13_465 y-1,x+1,-z 0 1 0 1 0 0 0 0 -1 -148.212 148.212 0 14 'crystal symmetry operation' 14_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 148.212 148.212 0 15 'crystal symmetry operation' 15_465 y-1,-x+1,z 0 1 0 -1 0 0 0 0 1 -148.212 148.212 0 16 'crystal symmetry operation' 16_665 -y+1,x+1,z 0 -1 0 1 0 0 0 0 1 148.212 148.212 0 17 'crystal symmetry operation' 17_566 x,z+1,-y+1 1 0 0 0 0 1 0 -1 0 0 148.212 148.212 18 'crystal symmetry operation' 18_564 -x,z+1,y-1 -1 0 0 0 0 1 0 1 0 0 148.212 -148.212 19 'crystal symmetry operation' 19_566 -x,-z+1,-y+1 -1 0 0 0 0 -1 0 -1 0 0 148.212 148.212 20 'crystal symmetry operation' 20_564 x,-z+1,y-1 1 0 0 0 0 -1 0 1 0 0 148.212 -148.212 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_575 z,-y+2,x 0 0 1 0 -1 0 1 0 0 0 296.424 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_575 -z,-y+2,-x 0 0 -1 0 -1 0 -1 0 0 0 296.424 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 122 A ASP 122 1_555 D AG AG . A AG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc2 A OE1 GLU 130 A GLU 130 1_555 H AG AG . A AG 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc3 A OE1 GLU 130 A GLU 130 1_555 H AG AG . A AG 207 6_566 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc4 D AG AG . A AG 203 1_555 I O HOH . A HOH 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc5 E AG AG . A AG 204 1_555 I O HOH . A HOH 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc6 H AG AG . A AG 207 1_555 I O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc7 H AG AG . A AG 207 1_555 I O HOH . A HOH 331 12_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8GY1 _atom_sites.fract_transf_matrix[1][1] 0.006747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006747 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006747 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 2 GOL GOL . C 2 GOL A 1 202 3 GOL GOL . D 3 AG A 1 203 5 AG AG . E 3 AG A 1 204 6 AG AG . F 3 AG A 1 205 7 AG AG . G 3 AG A 1 206 8 AG AG . H 3 AG A 1 207 9 AG AG . I 4 HOH A 1 301 132 HOH HOH . I 4 HOH A 2 302 143 HOH HOH . I 4 HOH A 3 303 115 HOH HOH . I 4 HOH A 4 304 96 HOH HOH . I 4 HOH A 5 305 141 HOH HOH . I 4 HOH A 6 306 199 HOH HOH . I 4 HOH A 7 307 102 HOH HOH . I 4 HOH A 8 308 124 HOH HOH . I 4 HOH A 9 309 185 HOH HOH . I 4 HOH A 10 310 91 HOH HOH . I 4 HOH A 11 311 78 HOH HOH . I 4 HOH A 12 312 179 HOH HOH . I 4 HOH A 13 313 49 HOH HOH . I 4 HOH A 14 314 13 HOH HOH . I 4 HOH A 15 315 130 HOH HOH . I 4 HOH A 16 316 2 HOH HOH . I 4 HOH A 17 317 117 HOH HOH . I 4 HOH A 18 318 127 HOH HOH . I 4 HOH A 19 319 84 HOH HOH . I 4 HOH A 20 320 53 HOH HOH . I 4 HOH A 21 321 107 HOH HOH . I 4 HOH A 22 322 43 HOH HOH . I 4 HOH A 23 323 30 HOH HOH . I 4 HOH A 24 324 148 HOH HOH . I 4 HOH A 25 325 8 HOH HOH . I 4 HOH A 26 326 93 HOH HOH . I 4 HOH A 27 327 38 HOH HOH . I 4 HOH A 28 328 94 HOH HOH . I 4 HOH A 29 329 57 HOH HOH . I 4 HOH A 30 330 86 HOH HOH . I 4 HOH A 31 331 198 HOH HOH . I 4 HOH A 32 332 41 HOH HOH . I 4 HOH A 33 333 21 HOH HOH . I 4 HOH A 34 334 51 HOH HOH . I 4 HOH A 35 335 60 HOH HOH . I 4 HOH A 36 336 45 HOH HOH . I 4 HOH A 37 337 15 HOH HOH . I 4 HOH A 38 338 170 HOH HOH . I 4 HOH A 39 339 165 HOH HOH . I 4 HOH A 40 340 128 HOH HOH . I 4 HOH A 41 341 16 HOH HOH . I 4 HOH A 42 342 66 HOH HOH . I 4 HOH A 43 343 150 HOH HOH . I 4 HOH A 44 344 11 HOH HOH . I 4 HOH A 45 345 162 HOH HOH . I 4 HOH A 46 346 112 HOH HOH . I 4 HOH A 47 347 17 HOH HOH . I 4 HOH A 48 348 152 HOH HOH . I 4 HOH A 49 349 12 HOH HOH . I 4 HOH A 50 350 111 HOH HOH . I 4 HOH A 51 351 158 HOH HOH . I 4 HOH A 52 352 163 HOH HOH . I 4 HOH A 53 353 181 HOH HOH . I 4 HOH A 54 354 1 HOH HOH . I 4 HOH A 55 355 58 HOH HOH . I 4 HOH A 56 356 90 HOH HOH . I 4 HOH A 57 357 135 HOH HOH . I 4 HOH A 58 358 22 HOH HOH . I 4 HOH A 59 359 26 HOH HOH . I 4 HOH A 60 360 27 HOH HOH . I 4 HOH A 61 361 89 HOH HOH . I 4 HOH A 62 362 69 HOH HOH . I 4 HOH A 63 363 129 HOH HOH . I 4 HOH A 64 364 20 HOH HOH . I 4 HOH A 65 365 28 HOH HOH . I 4 HOH A 66 366 103 HOH HOH . I 4 HOH A 67 367 3 HOH HOH . I 4 HOH A 68 368 24 HOH HOH . I 4 HOH A 69 369 101 HOH HOH . I 4 HOH A 70 370 145 HOH HOH . I 4 HOH A 71 371 167 HOH HOH . I 4 HOH A 72 372 23 HOH HOH . I 4 HOH A 73 373 61 HOH HOH . I 4 HOH A 74 374 173 HOH HOH . I 4 HOH A 75 375 5 HOH HOH . I 4 HOH A 76 376 177 HOH HOH . I 4 HOH A 77 377 77 HOH HOH . I 4 HOH A 78 378 59 HOH HOH . I 4 HOH A 79 379 178 HOH HOH . I 4 HOH A 80 380 7 HOH HOH . I 4 HOH A 81 381 121 HOH HOH . I 4 HOH A 82 382 98 HOH HOH . I 4 HOH A 83 383 153 HOH HOH . I 4 HOH A 84 384 9 HOH HOH . I 4 HOH A 85 385 37 HOH HOH . I 4 HOH A 86 386 63 HOH HOH . I 4 HOH A 87 387 65 HOH HOH . I 4 HOH A 88 388 122 HOH HOH . I 4 HOH A 89 389 14 HOH HOH . I 4 HOH A 90 390 29 HOH HOH . I 4 HOH A 91 391 80 HOH HOH . I 4 HOH A 92 392 39 HOH HOH . I 4 HOH A 93 393 146 HOH HOH . I 4 HOH A 94 394 106 HOH HOH . I 4 HOH A 95 395 32 HOH HOH . I 4 HOH A 96 396 40 HOH HOH . I 4 HOH A 97 397 33 HOH HOH . I 4 HOH A 98 398 46 HOH HOH . I 4 HOH A 99 399 47 HOH HOH . I 4 HOH A 100 400 202 HOH HOH . I 4 HOH A 101 401 10 HOH HOH . I 4 HOH A 102 402 6 HOH HOH . I 4 HOH A 103 403 74 HOH HOH . I 4 HOH A 104 404 182 HOH HOH . I 4 HOH A 105 405 34 HOH HOH . I 4 HOH A 106 406 62 HOH HOH . I 4 HOH A 107 407 48 HOH HOH . I 4 HOH A 108 408 35 HOH HOH . I 4 HOH A 109 409 174 HOH HOH . I 4 HOH A 110 410 44 HOH HOH . I 4 HOH A 111 411 64 HOH HOH . I 4 HOH A 112 412 56 HOH HOH . I 4 HOH A 113 413 99 HOH HOH . I 4 HOH A 114 414 157 HOH HOH . I 4 HOH A 115 415 109 HOH HOH . I 4 HOH A 116 416 92 HOH HOH . I 4 HOH A 117 417 168 HOH HOH . I 4 HOH A 118 418 52 HOH HOH . I 4 HOH A 119 419 73 HOH HOH . I 4 HOH A 120 420 4 HOH HOH . I 4 HOH A 121 421 118 HOH HOH . I 4 HOH A 122 422 137 HOH HOH . I 4 HOH A 123 423 79 HOH HOH . I 4 HOH A 124 424 68 HOH HOH . I 4 HOH A 125 425 144 HOH HOH . I 4 HOH A 126 426 123 HOH HOH . I 4 HOH A 127 427 25 HOH HOH . I 4 HOH A 128 428 67 HOH HOH . I 4 HOH A 129 429 119 HOH HOH . I 4 HOH A 130 430 81 HOH HOH . I 4 HOH A 131 431 156 HOH HOH . I 4 HOH A 132 432 75 HOH HOH . I 4 HOH A 133 433 31 HOH HOH . I 4 HOH A 134 434 195 HOH HOH . I 4 HOH A 135 435 180 HOH HOH . I 4 HOH A 136 436 42 HOH HOH . I 4 HOH A 137 437 160 HOH HOH . I 4 HOH A 138 438 149 HOH HOH . I 4 HOH A 139 439 131 HOH HOH . I 4 HOH A 140 440 190 HOH HOH . I 4 HOH A 141 441 200 HOH HOH . I 4 HOH A 142 442 85 HOH HOH . I 4 HOH A 143 443 125 HOH HOH . I 4 HOH A 144 444 194 HOH HOH . I 4 HOH A 145 445 192 HOH HOH . I 4 HOH A 146 446 87 HOH HOH . I 4 HOH A 147 447 55 HOH HOH . I 4 HOH A 148 448 100 HOH HOH . I 4 HOH A 149 449 161 HOH HOH . I 4 HOH A 150 450 138 HOH HOH . I 4 HOH A 151 451 19 HOH HOH . I 4 HOH A 152 452 171 HOH HOH . I 4 HOH A 153 453 184 HOH HOH . I 4 HOH A 154 454 113 HOH HOH . I 4 HOH A 155 455 196 HOH HOH . I 4 HOH A 156 456 140 HOH HOH . I 4 HOH A 157 457 18 HOH HOH . I 4 HOH A 158 458 188 HOH HOH . I 4 HOH A 159 459 82 HOH HOH . I 4 HOH A 160 460 70 HOH HOH . I 4 HOH A 161 461 110 HOH HOH . I 4 HOH A 162 462 71 HOH HOH . I 4 HOH A 163 463 164 HOH HOH . I 4 HOH A 164 464 136 HOH HOH . I 4 HOH A 165 465 155 HOH HOH . I 4 HOH A 166 466 186 HOH HOH . I 4 HOH A 167 467 54 HOH HOH . I 4 HOH A 168 468 116 HOH HOH . I 4 HOH A 169 469 104 HOH HOH . I 4 HOH A 170 470 197 HOH HOH . I 4 HOH A 171 471 201 HOH HOH . I 4 HOH A 172 472 166 HOH HOH . I 4 HOH A 173 473 142 HOH HOH . I 4 HOH A 174 474 193 HOH HOH . I 4 HOH A 175 475 105 HOH HOH . I 4 HOH A 176 476 126 HOH HOH . I 4 HOH A 177 477 72 HOH HOH . I 4 HOH A 178 478 147 HOH HOH . I 4 HOH A 179 479 76 HOH HOH . I 4 HOH A 180 480 88 HOH HOH . I 4 HOH A 181 481 191 HOH HOH . I 4 HOH A 182 482 95 HOH HOH . I 4 HOH A 183 483 108 HOH HOH . I 4 HOH A 184 484 172 HOH HOH . I 4 HOH A 185 485 83 HOH HOH . I 4 HOH A 186 486 169 HOH HOH . I 4 HOH A 187 487 139 HOH HOH . I 4 HOH A 188 488 50 HOH HOH . I 4 HOH A 189 489 154 HOH HOH . I 4 HOH A 190 490 97 HOH HOH . I 4 HOH A 191 491 114 HOH HOH . I 4 HOH A 192 492 120 HOH HOH . I 4 HOH A 193 493 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 0.66 123.08 55.33 1 76.81 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 -0.435 123.463 54.508 1 65.84 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 1.713 124.158 55.137 1 73.73 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 1.19 125.349 55.694 1 72.41 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 3.037 123.861 55.849 1 79.52 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 4.085 124.439 55.043 1 78.23 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #