data_8GYE # _model_server_result.job_id zGD-IUmpqWK1Oj8jbEQ-og _model_server_result.datetime_utc '2024-11-26 18:52:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 8GYE # _exptl.entry_id 8GYE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 82.495 _cell.angle_gamma 74.822 _cell.entry_id 8GYE _cell.length_a 60.021 _cell.length_b 65.913 _cell.length_c 83.643 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,I,J,N,O 1 1 C,D,L,M 2 1 B,H,K 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_545 x,y-1,z 1 0 0 0 1 0 0 0 1 -17.257251 -63.613763 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 28 1_555 A SG CYS 14 A CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 8 A CYS 31 1_555 A SG CYS 22 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 25 A CYS 48 1_555 A SG CYS 39 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 42 A CYS 65 1_555 A SG CYS 55 A CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 45 A CYS 68 1_555 A SG CYS 63 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 65 A CYS 88 1_555 A SG CYS 79 A CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 71 A CYS 94 1_555 A SG CYS 76 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 A SG CYS 83 A CYS 106 1_555 A SG CYS 94 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 A SG CYS 97 A CYS 120 1_555 A SG CYS 110 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 A SG CYS 116 A CYS 139 1_555 A SG CYS 135 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 B SG CYS 5 D CYS 28 1_555 B SG CYS 14 D CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 B SG CYS 8 D CYS 31 1_555 B SG CYS 22 D CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 B SG CYS 25 D CYS 48 1_555 B SG CYS 39 D CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf14 B SG CYS 42 D CYS 65 1_555 B SG CYS 55 D CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 B SG CYS 45 D CYS 68 1_555 B SG CYS 63 D CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 B SG CYS 65 D CYS 88 1_555 B SG CYS 79 D CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 B SG CYS 71 D CYS 94 1_555 B SG CYS 76 D CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf18 B SG CYS 83 D CYS 106 1_555 B SG CYS 94 D CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf19 B SG CYS 97 D CYS 120 1_555 B SG CYS 110 D CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf20 B SG CYS 116 D CYS 139 1_555 B SG CYS 135 D CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf21 C SG CYS 22 B CYS 22 1_555 C SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf22 C SG CYS 144 B CYS 144 1_555 C SG CYS 200 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf23 D SG CYS 23 C CYS 23 1_555 D SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf24 D SG CYS 134 C CYS 134 1_555 D SG CYS 194 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf25 E SG CYS 22 E CYS 22 1_555 E SG CYS 95 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf26 E SG CYS 144 E CYS 144 1_555 E SG CYS 200 E CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf27 F SG CYS 23 F CYS 23 1_555 F SG CYS 88 F CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf28 F SG CYS 134 F CYS 134 1_555 F SG CYS 194 F CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 126 A ASN 149 1_555 G C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 B ND2 ASN 126 D ASN 149 1_555 H C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8GYE _atom_sites.fract_transf_matrix[1][1] 0.016661 _atom_sites.fract_transf_matrix[1][2] -0.00452 _atom_sites.fract_transf_matrix[1][3] -0.002358 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01572 _atom_sites.fract_transf_matrix[2][3] 0.000562 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 201 201 NAG NAG . H 4 NAG D 1 201 201 NAG NAG . I 5 GOL E 1 301 2 GOL GOL . J 6 HOH A 1 301 33 HOH HOH . J 6 HOH A 2 302 72 HOH HOH . J 6 HOH A 3 303 38 HOH HOH . J 6 HOH A 4 304 106 HOH HOH . J 6 HOH A 5 305 45 HOH HOH . J 6 HOH A 6 306 89 HOH HOH . J 6 HOH A 7 307 2 HOH HOH . J 6 HOH A 8 308 7 HOH HOH . J 6 HOH A 9 309 53 HOH HOH . J 6 HOH A 10 310 128 HOH HOH . J 6 HOH A 11 311 24 HOH HOH . J 6 HOH A 12 312 30 HOH HOH . J 6 HOH A 13 313 73 HOH HOH . K 6 HOH D 1 301 54 HOH HOH . K 6 HOH D 2 302 16 HOH HOH . K 6 HOH D 3 303 13 HOH HOH . K 6 HOH D 4 304 69 HOH HOH . K 6 HOH D 5 305 9 HOH HOH . K 6 HOH D 6 306 65 HOH HOH . K 6 HOH D 7 307 22 HOH HOH . K 6 HOH D 8 308 127 HOH HOH . L 6 HOH B 1 301 120 HOH HOH . L 6 HOH B 2 302 52 HOH HOH . L 6 HOH B 3 303 119 HOH HOH . L 6 HOH B 4 304 68 HOH HOH . L 6 HOH B 5 305 3 HOH HOH . L 6 HOH B 6 306 86 HOH HOH . L 6 HOH B 7 307 42 HOH HOH . L 6 HOH B 8 308 118 HOH HOH . L 6 HOH B 9 309 50 HOH HOH . L 6 HOH B 10 310 90 HOH HOH . L 6 HOH B 11 311 122 HOH HOH . L 6 HOH B 12 312 81 HOH HOH . L 6 HOH B 13 313 21 HOH HOH . L 6 HOH B 14 314 105 HOH HOH . L 6 HOH B 15 315 47 HOH HOH . L 6 HOH B 16 316 124 HOH HOH . L 6 HOH B 17 317 87 HOH HOH . L 6 HOH B 18 318 100 HOH HOH . L 6 HOH B 19 319 91 HOH HOH . L 6 HOH B 20 320 39 HOH HOH . L 6 HOH B 21 321 12 HOH HOH . L 6 HOH B 22 322 126 HOH HOH . L 6 HOH B 23 323 67 HOH HOH . L 6 HOH B 24 324 103 HOH HOH . L 6 HOH B 25 325 102 HOH HOH . L 6 HOH B 26 326 44 HOH HOH . L 6 HOH B 27 327 59 HOH HOH . L 6 HOH B 28 328 1 HOH HOH . L 6 HOH B 29 329 113 HOH HOH . L 6 HOH B 30 330 107 HOH HOH . M 6 HOH C 1 301 114 HOH HOH . M 6 HOH C 2 302 79 HOH HOH . M 6 HOH C 3 303 83 HOH HOH . M 6 HOH C 4 304 20 HOH HOH . M 6 HOH C 5 305 40 HOH HOH . M 6 HOH C 6 306 75 HOH HOH . M 6 HOH C 7 307 32 HOH HOH . M 6 HOH C 8 308 17 HOH HOH . M 6 HOH C 9 309 35 HOH HOH . M 6 HOH C 10 310 63 HOH HOH . M 6 HOH C 11 311 96 HOH HOH . M 6 HOH C 12 312 56 HOH HOH . M 6 HOH C 13 313 6 HOH HOH . M 6 HOH C 14 314 4 HOH HOH . M 6 HOH C 15 315 76 HOH HOH . M 6 HOH C 16 316 51 HOH HOH . M 6 HOH C 17 317 37 HOH HOH . M 6 HOH C 18 318 108 HOH HOH . M 6 HOH C 19 319 62 HOH HOH . M 6 HOH C 20 320 97 HOH HOH . M 6 HOH C 21 321 10 HOH HOH . M 6 HOH C 22 322 61 HOH HOH . M 6 HOH C 23 323 101 HOH HOH . M 6 HOH C 24 324 111 HOH HOH . M 6 HOH C 25 325 74 HOH HOH . M 6 HOH C 26 326 34 HOH HOH . M 6 HOH C 27 327 125 HOH HOH . M 6 HOH C 28 328 71 HOH HOH . M 6 HOH C 29 329 43 HOH HOH . M 6 HOH C 30 330 66 HOH HOH . N 6 HOH E 1 401 36 HOH HOH . N 6 HOH E 2 402 18 HOH HOH . N 6 HOH E 3 403 80 HOH HOH . N 6 HOH E 4 404 77 HOH HOH . N 6 HOH E 5 405 57 HOH HOH . N 6 HOH E 6 406 117 HOH HOH . N 6 HOH E 7 407 78 HOH HOH . N 6 HOH E 8 408 11 HOH HOH . N 6 HOH E 9 409 64 HOH HOH . N 6 HOH E 10 410 28 HOH HOH . N 6 HOH E 11 411 26 HOH HOH . N 6 HOH E 12 412 88 HOH HOH . N 6 HOH E 13 413 31 HOH HOH . N 6 HOH E 14 414 85 HOH HOH . N 6 HOH E 15 415 98 HOH HOH . N 6 HOH E 16 416 55 HOH HOH . N 6 HOH E 17 417 109 HOH HOH . N 6 HOH E 18 418 121 HOH HOH . N 6 HOH E 19 419 19 HOH HOH . N 6 HOH E 20 420 14 HOH HOH . N 6 HOH E 21 421 82 HOH HOH . N 6 HOH E 22 422 115 HOH HOH . N 6 HOH E 23 423 60 HOH HOH . N 6 HOH E 24 424 93 HOH HOH . N 6 HOH E 25 425 94 HOH HOH . N 6 HOH E 26 426 99 HOH HOH . N 6 HOH E 27 427 8 HOH HOH . N 6 HOH E 28 428 58 HOH HOH . O 6 HOH F 1 301 92 HOH HOH . O 6 HOH F 2 302 27 HOH HOH . O 6 HOH F 3 303 110 HOH HOH . O 6 HOH F 4 304 112 HOH HOH . O 6 HOH F 5 305 5 HOH HOH . O 6 HOH F 6 306 41 HOH HOH . O 6 HOH F 7 307 123 HOH HOH . O 6 HOH F 8 308 116 HOH HOH . O 6 HOH F 9 309 46 HOH HOH . O 6 HOH F 10 310 29 HOH HOH . O 6 HOH F 11 311 25 HOH HOH . O 6 HOH F 12 312 48 HOH HOH . O 6 HOH F 13 313 15 HOH HOH . O 6 HOH F 14 314 49 HOH HOH . O 6 HOH F 15 315 70 HOH HOH . O 6 HOH F 16 316 23 HOH HOH . O 6 HOH F 17 317 95 HOH HOH . O 6 HOH F 18 318 84 HOH HOH . O 6 HOH F 19 319 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 4 33.712 93.69 88.03 1 96.06 ? C1 NAG 201 D 1 HETATM 2 C C2 NAG . . . H 4 32.928 95 87.818 1 95.87 ? C2 NAG 201 D 1 HETATM 3 C C3 NAG . . . H 4 32.36 95.524 89.144 1 99.42 ? C3 NAG 201 D 1 HETATM 4 C C4 NAG . . . H 4 31.632 94.422 89.899 1 97.99 ? C4 NAG 201 D 1 HETATM 5 C C5 NAG . . . H 4 32.55 93.221 90.048 1 92.55 ? C5 NAG 201 D 1 HETATM 6 C C6 NAG . . . H 4 31.909 92.065 90.779 1 88.3 ? C6 NAG 201 D 1 HETATM 7 C C7 NAG . . . H 4 33.346 96.839 86.233 1 105.91 ? C7 NAG 201 D 1 HETATM 8 C C8 NAG . . . H 4 31.925 96.668 85.792 1 109.96 ? C8 NAG 201 D 1 HETATM 9 N N2 NAG . . . H 4 33.766 96.011 87.195 1 100.84 ? N2 NAG 201 D 1 HETATM 10 O O3 NAG . . . H 4 31.446 96.582 88.88 1 94.03 ? O3 NAG 201 D 1 HETATM 11 O O4 NAG . . . H 4 31.228 94.879 91.185 1 97.89 ? O4 NAG 201 D 1 HETATM 12 O O5 NAG . . . H 4 32.906 92.753 88.741 1 92.91 ? O5 NAG 201 D 1 HETATM 13 O O6 NAG . . . H 4 32.671 90.876 90.628 1 83.62 ? O6 NAG 201 D 1 HETATM 14 O O7 NAG . . . H 4 34.087 97.687 85.738 1 102.96 ? O7 NAG 201 D 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #