data_8GZB # _model_server_result.job_id rI6AXTsj97EVc5wqe4fDCw _model_server_result.datetime_utc '2024-11-09 02:42:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gzb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8GZB # _exptl.entry_id 8GZB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.591 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(4-chlorophenyl)-1,3,4-oxadiazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.162 _cell.angle_gamma 90 _cell.entry_id 8GZB _cell.length_a 114.11 _cell.length_b 54.07 _cell.length_c 44.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GZB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -9.372998 0 43.491459 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C11 _struct_conn.ptnr2_label_comp_id KM6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id KM6 _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.809 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H5 Cl N2 O' _chem_comp.formula_weight 180.591 _chem_comp.id KM6 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4-chlorophenyl)-1,3,4-oxadiazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C2 KM6 sing 182 n n C2 C3 KM6 doub 183 n y C2 C7 KM6 sing 184 n y C3 C4 KM6 sing 185 n y C7 C6 KM6 doub 186 n y C4 C5 KM6 doub 187 n y C6 C5 KM6 sing 188 n y C5 C8 KM6 sing 189 n n C8 O19 KM6 sing 190 n y C8 N9 KM6 doub 191 n y O19 C11 KM6 sing 192 n y N9 N10 KM6 sing 193 n y C11 N10 KM6 doub 194 n y C11 H1 KM6 sing 195 n n C3 H2 KM6 sing 196 n n C4 H3 KM6 sing 197 n n C6 H4 KM6 sing 198 n n C7 H5 KM6 sing 199 n n # _atom_sites.entry_id 8GZB _atom_sites.fract_transf_matrix[1][1] 0.008763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001889 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022993 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 401 EDO EDO . C 3 KM6 A 1 402 145 KM6 C41 . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 16 HOH HOH . D 4 HOH A 3 503 25 HOH HOH . D 4 HOH A 4 504 20 HOH HOH . D 4 HOH A 5 505 4 HOH HOH . D 4 HOH A 6 506 11 HOH HOH . D 4 HOH A 7 507 28 HOH HOH . D 4 HOH A 8 508 26 HOH HOH . D 4 HOH A 9 509 5 HOH HOH . D 4 HOH A 10 510 3 HOH HOH . D 4 HOH A 11 511 21 HOH HOH . D 4 HOH A 12 512 9 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 23 HOH HOH . D 4 HOH A 15 515 22 HOH HOH . D 4 HOH A 16 516 17 HOH HOH . D 4 HOH A 17 517 12 HOH HOH . D 4 HOH A 18 518 14 HOH HOH . D 4 HOH A 19 519 24 HOH HOH . D 4 HOH A 20 520 2 HOH HOH . D 4 HOH A 21 521 7 HOH HOH . D 4 HOH A 22 522 27 HOH HOH . D 4 HOH A 23 523 8 HOH HOH . D 4 HOH A 24 524 18 HOH HOH . D 4 HOH A 25 525 10 HOH HOH . D 4 HOH A 26 526 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 KM6 . . . C 3 -14.192 -4.352 1.872 1 39.17 ? C11 KM6 402 A 1 HETATM 2 C C2 KM6 . . . C 3 -17.85 -0.457 -1.612 1 59.16 ? C2 KM6 402 A 1 HETATM 3 C C3 KM6 . . . C 3 -16.492 -0.367 -1.401 1 48.56 ? C3 KM6 402 A 1 HETATM 4 C C4 KM6 . . . C 3 -15.867 -1.31 -0.606 1 47.88 ? C4 KM6 402 A 1 HETATM 5 C C5 KM6 . . . C 3 -16.58 -2.361 -0.022 1 54.62 ? C5 KM6 402 A 1 HETATM 6 C C6 KM6 . . . C 3 -17.945 -2.444 -0.231 1 51.77 ? C6 KM6 402 A 1 HETATM 7 C C7 KM6 . . . C 3 -18.57 -1.49 -1.028 1 59.49 ? C7 KM6 402 A 1 HETATM 8 C C8 KM6 . . . C 3 -15.813 -3.37 0.842 1 55.26 ? C8 KM6 402 A 1 HETATM 9 N N9 KM6 . . . C 3 -16.325 -4.404 1.504 1 48.55 ? N9 KM6 402 A 1 HETATM 10 N N10 KM6 . . . C 3 -15.29 -5.037 2.149 1 38.58 ? N10 KM6 402 A 1 HETATM 11 O O19 KM6 . . . C 3 -14.509 -3.33 1.081 1 55.31 ? O19 KM6 402 A 1 HETATM 12 CL CL1 KM6 . . . C 3 -18.666 0.759 -2.632 1 81.58 ? CL1 KM6 402 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #