data_8H07 # _model_server_result.job_id WSuTkomOcrUwytZV4bA3wg _model_server_result.datetime_utc '2025-01-28 03:00:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1301}' # _entry.id 8H07 # _exptl.entry_id 8H07 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8H07 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 P N N ? 6 Q N N ? 6 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 289 A CYS 291 1_555 A SG CYS 299 A CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 334 A CYS 336 1_555 A SG CYS 359 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 377 A CYS 379 1_555 A SG CYS 430 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 389 A CYS 391 1_555 A SG CYS 523 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? disulf ? disulf5 A SG CYS 536 A CYS 538 1_555 A SG CYS 588 A CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf6 A SG CYS 615 A CYS 617 1_555 A SG CYS 647 A CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 A SG CYS 660 A CYS 662 1_555 A SG CYS 669 A CYS 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 736 A CYS 738 1_555 A SG CYS 758 A CYS 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 A SG CYS 741 A CYS 743 1_555 A SG CYS 747 A CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf10 A SG CYS 1030 A CYS 1032 1_555 A SG CYS 1041 A CYS 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf11 A SG CYS 1080 A CYS 1082 1_555 A SG CYS 1124 A CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 B SG CYS 289 B CYS 291 1_555 B SG CYS 299 B CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf13 B SG CYS 334 B CYS 336 1_555 B SG CYS 359 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf14 B SG CYS 377 B CYS 379 1_555 B SG CYS 430 B CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf15 B SG CYS 389 B CYS 391 1_555 B SG CYS 523 B CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? disulf ? disulf16 B SG CYS 536 B CYS 538 1_555 B SG CYS 588 B CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf17 B SG CYS 615 B CYS 617 1_555 B SG CYS 647 B CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf18 B SG CYS 660 B CYS 662 1_555 B SG CYS 669 B CYS 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf19 B SG CYS 741 B CYS 743 1_555 B SG CYS 747 B CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf20 B SG CYS 1030 B CYS 1032 1_555 B SG CYS 1041 B CYS 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf21 B SG CYS 1080 B CYS 1082 1_555 B SG CYS 1124 B CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf22 C SG CYS 289 C CYS 291 1_555 C SG CYS 299 C CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf23 C SG CYS 334 C CYS 336 1_555 C SG CYS 359 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf24 C SG CYS 377 C CYS 379 1_555 C SG CYS 430 C CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf25 C SG CYS 389 C CYS 391 1_555 C SG CYS 523 C CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? disulf ? disulf26 C SG CYS 536 C CYS 538 1_555 C SG CYS 588 C CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf27 C SG CYS 615 C CYS 617 1_555 C SG CYS 647 C CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf28 C SG CYS 660 C CYS 662 1_555 C SG CYS 669 C CYS 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf29 C SG CYS 736 C CYS 738 1_555 C SG CYS 758 C CYS 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf30 C SG CYS 741 C CYS 743 1_555 C SG CYS 747 C CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf31 C SG CYS 1030 C CYS 1032 1_555 C SG CYS 1041 C CYS 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf32 C SG CYS 1080 C CYS 1082 1_555 C SG CYS 1124 C CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf33 D SG CYS 22 E CYS 22 1_555 D SG CYS 93 E CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf34 F SG CYS 22 N CYS 22 1_555 F SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf35 G SG CYS 23 O CYS 23 1_555 G SG CYS 88 O CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf36 H SG CYS 22 G CYS 22 1_555 H SG CYS 93 G CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf37 J SG CYS 22 I CYS 22 1_555 J SG CYS 96 I CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf38 K SG CYS 23 K CYS 23 1_555 K SG CYS 88 K CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf39 L SG CYS 22 M CYS 22 1_555 L SG CYS 93 M CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf40 N SG CYS 22 Q CYS 22 1_555 N SG CYS 96 Q CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf41 O SG CYS 23 R CYS 23 1_555 O SG CYS 88 R CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? covale ? covale1 A ND2 ASN 341 A ASN 343 1_555 P C1 NAG . A NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 B ND2 ASN 341 B ASN 343 1_555 Q C1 NAG . B NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale3 C ND2 ASN 341 C ASN 343 1_555 R C1 NAG . C NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8H07 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 6 NAG A 1 1301 527 NAG NAG . Q 6 NAG B 1 1301 527 NAG NAG . R 6 NAG C 1 1301 527 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . P 6 161.316 217.138 199.585 1 30 ? C1 NAG 1301 A 1 HETATM 2 C C2 NAG . . . P 6 162.337 218.254 199.362 1 30 ? C2 NAG 1301 A 1 HETATM 3 C C3 NAG . . . P 6 162.899 218.248 197.956 1 30 ? C3 NAG 1301 A 1 HETATM 4 C C4 NAG . . . P 6 163.383 216.859 197.627 1 30 ? C4 NAG 1301 A 1 HETATM 5 C C5 NAG . . . P 6 162.21 215.907 197.76 1 30 ? C5 NAG 1301 A 1 HETATM 6 C C6 NAG . . . P 6 162.594 214.501 197.332 1 30 ? C6 NAG 1301 A 1 HETATM 7 C C7 NAG . . . P 6 161.624 220.102 200.768 1 30 ? C7 NAG 1301 A 1 HETATM 8 C C8 NAG . . . P 6 160.806 221.355 200.845 1 30 ? C8 NAG 1301 A 1 HETATM 9 N N2 NAG . . . P 6 161.705 219.538 199.57 1 30 ? N2 NAG 1301 A 1 HETATM 10 O O3 NAG . . . P 6 164.002 219.152 197.857 1 30 ? O3 NAG 1301 A 1 HETATM 11 O O4 NAG . . . P 6 163.884 216.863 196.291 1 30 ? O4 NAG 1301 A 1 HETATM 12 O O5 NAG . . . P 6 161.804 215.884 199.121 1 30 ? O5 NAG 1301 A 1 HETATM 13 O O6 NAG . . . P 6 163.674 214.048 198.147 1 30 ? O6 NAG 1301 A 1 HETATM 14 O O7 NAG . . . P 6 162.17 219.617 201.742 1 30 ? O7 NAG 1301 A 1 # _model_server_stats.io_time_ms 139 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 127 _model_server_stats.query_time_ms 1097 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #