data_8H0D
#
_model_server_result.job_id            Km3iKp-DFDqF5lhJ27L6Zw 
_model_server_result.datetime_utc      '2025-06-28 05:33:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8h0d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    8H0D 
#
_exptl.entry_id    8H0D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              328.488 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.61 
_cell.angle_gamma         90 
_cell.entry_id            8H0D 
_cell.length_a            65.671 
_cell.length_b            72.13 
_cell.length_c            83.489 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8H0D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,G 1 1 
B,D,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 51 A CYS 49 1_555 A SG CYS 106 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 A SG CYS 359 A CYS 357 1_555 A SG CYS 380 A CYS 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 B SG CYS 51 B CYS 49 1_555 B SG CYS 106 B CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf4 B SG CYS 359 B CYS 357 1_555 B SG CYS 380 B CYS 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc1 B OE2 GLU 210 B GLU 208 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc2 B OD1 ASP 265 B ASP 263 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc3 F MG MG . B MG 503 1_555 H O HOH . B HOH 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc4 F MG MG . B MG 503 1_555 H O HOH . B HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc5 F MG MG . B MG 503 1_555 H O HOH . B HOH 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
#
_chem_comp.formula           'C22 H32 O2' 
_chem_comp.formula_weight    328.488 
_chem_comp.id                HXA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 HXA doub 176 n n 
C1 O2 HXA sing 177 n n 
C1 C2 HXA sing 178 n n 
O2 HO2 HXA sing 179 n n 
C2 C3 HXA sing 180 n n 
C2 H21 HXA sing 181 n n 
C2 H22 HXA sing 182 n n 
C3 C4 HXA sing 183 n n 
C3 H31 HXA sing 184 n n 
C3 H32 HXA sing 185 n n 
C4 C5 HXA doub 186 z n 
C4 H4 HXA sing 187 n n 
C5 C6 HXA sing 188 n n 
C5 H5 HXA sing 189 n n 
C6 C7 HXA sing 190 n n 
C6 H61 HXA sing 191 n n 
C6 H62 HXA sing 192 n n 
C7 C8 HXA doub 193 z n 
C7 H7 HXA sing 194 n n 
C8 C9 HXA sing 195 n n 
C8 H8 HXA sing 196 n n 
C9 C10 HXA sing 197 n n 
C9 H91 HXA sing 198 n n 
C9 H92 HXA sing 199 n n 
C10 C11 HXA doub 200 z n 
C10 H10 HXA sing 201 n n 
C11 C12 HXA sing 202 n n 
C11 H11 HXA sing 203 n n 
C12 C13 HXA sing 204 n n 
C12 H121 HXA sing 205 n n 
C12 H122 HXA sing 206 n n 
C13 C14 HXA doub 207 z n 
C13 H13 HXA sing 208 n n 
C14 C15 HXA sing 209 n n 
C14 H14 HXA sing 210 n n 
C15 C16 HXA sing 211 n n 
C15 H151 HXA sing 212 n n 
C15 H152 HXA sing 213 n n 
C16 C17 HXA doub 214 z n 
C16 H16 HXA sing 215 n n 
C17 C18 HXA sing 216 n n 
C17 H17 HXA sing 217 n n 
C18 C19 HXA sing 218 n n 
C18 H181 HXA sing 219 n n 
C18 H182 HXA sing 220 n n 
C19 C20 HXA doub 221 z n 
C19 H19 HXA sing 222 n n 
C20 C21 HXA sing 223 n n 
C20 H20 HXA sing 224 n n 
C21 C22 HXA sing 225 n n 
C21 H211 HXA sing 226 n n 
C21 H212 HXA sing 227 n n 
C22 H221 HXA sing 228 n n 
C22 H222 HXA sing 229 n n 
C22 H223 HXA sing 230 n n 
#
_atom_sites.entry_id                     8H0D 
_atom_sites.fract_transf_matrix[1][1]    0.015227 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003129 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013864 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012228 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HXA A 1 501 501 HXA HXA . 
D 3 1PS B 1 501 501 1PS 1PS . 
E 3 1PS B 1 502 502 1PS 1PS . 
F 4 MG B 1 503 503 MG MG . 
G 5 HOH A 1 601 61 HOH HOH . 
G 5 HOH A 2 602 60 HOH HOH . 
G 5 HOH A 3 603 146 HOH HOH . 
G 5 HOH A 4 604 134 HOH HOH . 
G 5 HOH A 5 605 119 HOH HOH . 
G 5 HOH A 6 606 133 HOH HOH . 
G 5 HOH A 7 607 103 HOH HOH . 
G 5 HOH A 8 608 154 HOH HOH . 
G 5 HOH A 9 609 139 HOH HOH . 
G 5 HOH A 10 610 152 HOH HOH . 
G 5 HOH A 11 611 1 HOH HOH . 
G 5 HOH A 12 612 73 HOH HOH . 
G 5 HOH A 13 613 108 HOH HOH . 
G 5 HOH A 14 614 64 HOH HOH . 
G 5 HOH A 15 615 94 HOH HOH . 
G 5 HOH A 16 616 145 HOH HOH . 
G 5 HOH A 17 617 96 HOH HOH . 
G 5 HOH A 18 618 15 HOH HOH . 
G 5 HOH A 19 619 107 HOH HOH . 
G 5 HOH A 20 620 34 HOH HOH . 
G 5 HOH A 21 621 127 HOH HOH . 
G 5 HOH A 22 622 104 HOH HOH . 
G 5 HOH A 23 623 62 HOH HOH . 
G 5 HOH A 24 624 137 HOH HOH . 
G 5 HOH A 25 625 144 HOH HOH . 
G 5 HOH A 26 626 31 HOH HOH . 
G 5 HOH A 27 627 63 HOH HOH . 
G 5 HOH A 28 628 9 HOH HOH . 
G 5 HOH A 29 629 35 HOH HOH . 
G 5 HOH A 30 630 37 HOH HOH . 
G 5 HOH A 31 631 117 HOH HOH . 
G 5 HOH A 32 632 105 HOH HOH . 
G 5 HOH A 33 633 125 HOH HOH . 
G 5 HOH A 34 634 24 HOH HOH . 
G 5 HOH A 35 635 148 HOH HOH . 
G 5 HOH A 36 636 28 HOH HOH . 
G 5 HOH A 37 637 38 HOH HOH . 
G 5 HOH A 38 638 11 HOH HOH . 
G 5 HOH A 39 639 39 HOH HOH . 
G 5 HOH A 40 640 65 HOH HOH . 
G 5 HOH A 41 641 66 HOH HOH . 
G 5 HOH A 42 642 5 HOH HOH . 
G 5 HOH A 43 643 126 HOH HOH . 
G 5 HOH A 44 644 131 HOH HOH . 
G 5 HOH A 45 645 58 HOH HOH . 
G 5 HOH A 46 646 118 HOH HOH . 
G 5 HOH A 47 647 49 HOH HOH . 
G 5 HOH A 48 648 109 HOH HOH . 
G 5 HOH A 49 649 17 HOH HOH . 
G 5 HOH A 50 650 83 HOH HOH . 
G 5 HOH A 51 651 30 HOH HOH . 
G 5 HOH A 52 652 106 HOH HOH . 
G 5 HOH A 53 653 22 HOH HOH . 
G 5 HOH A 54 654 129 HOH HOH . 
G 5 HOH A 55 655 93 HOH HOH . 
G 5 HOH A 56 656 46 HOH HOH . 
G 5 HOH A 57 657 113 HOH HOH . 
G 5 HOH A 58 658 153 HOH HOH . 
G 5 HOH A 59 659 33 HOH HOH . 
G 5 HOH A 60 660 132 HOH HOH . 
G 5 HOH A 61 661 45 HOH HOH . 
G 5 HOH A 62 662 68 HOH HOH . 
G 5 HOH A 63 663 90 HOH HOH . 
G 5 HOH A 64 664 99 HOH HOH . 
G 5 HOH A 65 665 81 HOH HOH . 
G 5 HOH A 66 666 47 HOH HOH . 
G 5 HOH A 67 667 16 HOH HOH . 
G 5 HOH A 68 668 76 HOH HOH . 
G 5 HOH A 69 669 48 HOH HOH . 
G 5 HOH A 70 670 54 HOH HOH . 
G 5 HOH A 71 671 41 HOH HOH . 
G 5 HOH A 72 672 59 HOH HOH . 
G 5 HOH A 73 673 44 HOH HOH . 
G 5 HOH A 74 674 36 HOH HOH . 
G 5 HOH A 75 675 26 HOH HOH . 
G 5 HOH A 76 676 50 HOH HOH . 
G 5 HOH A 77 677 91 HOH HOH . 
G 5 HOH A 78 678 21 HOH HOH . 
G 5 HOH A 79 679 27 HOH HOH . 
G 5 HOH A 80 680 69 HOH HOH . 
G 5 HOH A 81 681 116 HOH HOH . 
G 5 HOH A 82 682 124 HOH HOH . 
G 5 HOH A 83 683 138 HOH HOH . 
H 5 HOH B 1 601 88 HOH HOH . 
H 5 HOH B 2 602 149 HOH HOH . 
H 5 HOH B 3 603 95 HOH HOH . 
H 5 HOH B 4 604 136 HOH HOH . 
H 5 HOH B 5 605 10 HOH HOH . 
H 5 HOH B 6 606 82 HOH HOH . 
H 5 HOH B 7 607 13 HOH HOH . 
H 5 HOH B 8 608 85 HOH HOH . 
H 5 HOH B 9 609 150 HOH HOH . 
H 5 HOH B 10 610 2 HOH HOH . 
H 5 HOH B 11 611 84 HOH HOH . 
H 5 HOH B 12 612 70 HOH HOH . 
H 5 HOH B 13 613 20 HOH HOH . 
H 5 HOH B 14 614 120 HOH HOH . 
H 5 HOH B 15 615 55 HOH HOH . 
H 5 HOH B 16 616 86 HOH HOH . 
H 5 HOH B 17 617 151 HOH HOH . 
H 5 HOH B 18 618 79 HOH HOH . 
H 5 HOH B 19 619 135 HOH HOH . 
H 5 HOH B 20 620 111 HOH HOH . 
H 5 HOH B 21 621 8 HOH HOH . 
H 5 HOH B 22 622 56 HOH HOH . 
H 5 HOH B 23 623 89 HOH HOH . 
H 5 HOH B 24 624 74 HOH HOH . 
H 5 HOH B 25 625 52 HOH HOH . 
H 5 HOH B 26 626 80 HOH HOH . 
H 5 HOH B 27 627 75 HOH HOH . 
H 5 HOH B 28 628 78 HOH HOH . 
H 5 HOH B 29 629 12 HOH HOH . 
H 5 HOH B 30 630 97 HOH HOH . 
H 5 HOH B 31 631 128 HOH HOH . 
H 5 HOH B 32 632 25 HOH HOH . 
H 5 HOH B 33 633 71 HOH HOH . 
H 5 HOH B 34 634 6 HOH HOH . 
H 5 HOH B 35 635 7 HOH HOH . 
H 5 HOH B 36 636 19 HOH HOH . 
H 5 HOH B 37 637 92 HOH HOH . 
H 5 HOH B 38 638 101 HOH HOH . 
H 5 HOH B 39 639 87 HOH HOH . 
H 5 HOH B 40 640 147 HOH HOH . 
H 5 HOH B 41 641 3 HOH HOH . 
H 5 HOH B 42 642 77 HOH HOH . 
H 5 HOH B 43 643 141 HOH HOH . 
H 5 HOH B 44 644 4 HOH HOH . 
H 5 HOH B 45 645 130 HOH HOH . 
H 5 HOH B 46 646 14 HOH HOH . 
H 5 HOH B 47 647 114 HOH HOH . 
H 5 HOH B 48 648 122 HOH HOH . 
H 5 HOH B 49 649 18 HOH HOH . 
H 5 HOH B 50 650 121 HOH HOH . 
H 5 HOH B 51 651 100 HOH HOH . 
H 5 HOH B 52 652 29 HOH HOH . 
H 5 HOH B 53 653 43 HOH HOH . 
H 5 HOH B 54 654 142 HOH HOH . 
H 5 HOH B 55 655 67 HOH HOH . 
H 5 HOH B 56 656 40 HOH HOH . 
H 5 HOH B 57 657 42 HOH HOH . 
H 5 HOH B 58 658 102 HOH HOH . 
H 5 HOH B 59 659 51 HOH HOH . 
H 5 HOH B 60 660 32 HOH HOH . 
H 5 HOH B 61 661 57 HOH HOH . 
H 5 HOH B 62 662 143 HOH HOH . 
H 5 HOH B 63 663 123 HOH HOH . 
H 5 HOH B 64 664 98 HOH HOH . 
H 5 HOH B 65 665 115 HOH HOH . 
H 5 HOH B 66 666 72 HOH HOH . 
H 5 HOH B 67 667 140 HOH HOH . 
H 5 HOH B 68 668 53 HOH HOH . 
H 5 HOH B 69 669 112 HOH HOH . 
H 5 HOH B 70 670 110 HOH HOH . 
H 5 HOH B 71 671 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HXA . . . C 2 1.833 -5.107 -24.215 1 43.32 ? C1 HXA 501 A 1 
HETATM 2 O O1 HXA . . . C 2 1.525 -5.149 -23.047 1 43.19 ? O1 HXA 501 A 1 
HETATM 3 O O2 HXA . . . C 2 1.726 -6.141 -24.985 1 47.03 ? O2 HXA 501 A 1 
HETATM 4 C C2 HXA . . . C 2 2.333 -3.885 -24.942 1 39.13 ? C2 HXA 501 A 1 
HETATM 5 C C3 HXA . . . C 2 2.761 -2.689 -24.071 1 38 ? C3 HXA 501 A 1 
HETATM 6 C C4 HXA . . . C 2 3.991 -2.999 -23.259 1 42.31 ? C4 HXA 501 A 1 
HETATM 7 C C5 HXA . . . C 2 5.018 -2.2 -23.004 1 44.52 ? C5 HXA 501 A 1 
HETATM 8 C C6 HXA . . . C 2 5.24 -0.792 -23.468 1 45.99 ? C6 HXA 501 A 1 
HETATM 9 C C7 HXA . . . C 2 6.679 -0.692 -23.876 1 49.07 ? C7 HXA 501 A 1 
HETATM 10 C C8 HXA . . . C 2 7.511 0.331 -23.722 1 50.95 ? C8 HXA 501 A 1 
HETATM 11 C C9 HXA . . . C 2 7.24 1.677 -23.111 1 49.79 ? C9 HXA 501 A 1 
HETATM 12 C C10 HXA . . . C 2 7.582 1.589 -21.659 1 52.95 ? C10 HXA 501 A 1 
HETATM 13 C C11 HXA . . . C 2 7.459 2.521 -20.74 1 52.38 ? C11 HXA 501 A 1 
HETATM 14 C C12 HXA . . . C 2 6.941 3.905 -20.932 1 52.24 ? C12 HXA 501 A 1 
HETATM 15 C C13 HXA . . . C 2 6.807 4.651 -19.647 1 51.89 ? C13 HXA 501 A 1 
HETATM 16 C C14 HXA . . . C 2 5.818 4.599 -18.781 1 51.46 ? C14 HXA 501 A 1 
HETATM 17 C C15 HXA . . . C 2 4.586 3.761 -18.85 1 50.32 ? C15 HXA 501 A 1 
HETATM 18 C C16 HXA . . . C 2 3.806 3.998 -17.597 1 49.02 ? C16 HXA 501 A 1 
HETATM 19 C C17 HXA . . . C 2 2.502 3.916 -17.444 1 49.06 ? C17 HXA 501 A 1 
HETATM 20 C C18 HXA . . . C 2 1.492 3.521 -18.477 1 50.75 ? C18 HXA 501 A 1 
HETATM 21 C C19 HXA . . . C 2 0.623 4.673 -18.867 1 52.5 ? C19 HXA 501 A 1 
HETATM 22 C C20 HXA . . . C 2 0.464 5.178 -20.082 1 52.08 ? C20 HXA 501 A 1 
HETATM 23 C C21 HXA . . . C 2 1.155 4.683 -21.316 1 49.11 ? C21 HXA 501 A 1 
HETATM 24 C C22 HXA . . . C 2 0.2 4.302 -22.408 1 47.46 ? C22 HXA 501 A 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#