data_8H0S # _model_server_result.job_id WeZiyzhRw61t36kr58P9gA _model_server_result.datetime_utc '2024-12-22 01:59:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h0s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 8H0S # _exptl.entry_id 8H0S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.97 _cell.angle_beta 93.1 _cell.angle_gamma 101.55 _cell.entry_id 8H0S _cell.length_a 43.18 _cell.length_b 60.755 _cell.length_c 94.059 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H0S _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,G,J,K,N,O 1 1 B,C,F,H,I,L,M,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 E N1 A 1 X A 27 1_555 E N3 U 17 X U 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 E N6 A 1 X A 27 1_555 E O4 U 17 X U 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 E N3 C 2 X C 28 1_555 E N1 G 16 X G 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 E N4 C 2 X C 28 1_555 E O6 G 16 X G 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 E O2 C 2 X C 28 1_555 E N2 G 16 X G 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 E N1 G 3 X G 29 1_555 E N3 C 15 X C 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 E N2 G 3 X G 29 1_555 E O2 C 15 X C 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 E O6 G 3 X G 29 1_555 E N4 C 15 X C 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 E N1 G 4 X G 30 1_555 E N3 C 14 X C 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 E N2 G 4 X G 30 1_555 E O2 C 14 X C 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 E O6 G 4 X G 30 1_555 E N4 C 14 X C 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 E N1 A 5 X A 31 1_555 E N3 U 13 X U 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 E N6 A 5 X A 31 1_555 E O4 U 13 X U 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 F N1 A 1 Y A 27 1_555 F N3 U 17 Y U 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 F N6 A 1 Y A 27 1_555 F O4 U 17 Y U 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 F N3 C 2 Y C 28 1_555 F N1 G 16 Y G 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 F N4 C 2 Y C 28 1_555 F O6 G 16 Y G 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 F O2 C 2 Y C 28 1_555 F N2 G 16 Y G 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 F N1 G 3 Y G 29 1_555 F N3 C 15 Y C 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 F N2 G 3 Y G 29 1_555 F O2 C 15 Y C 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 F O6 G 3 Y G 29 1_555 F N4 C 15 Y C 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 F N1 G 4 Y G 30 1_555 F N3 C 14 Y C 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 F N2 G 4 Y G 30 1_555 F O2 C 14 Y C 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 F O6 G 4 Y G 30 1_555 F N4 C 14 Y C 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 F N1 A 5 Y A 31 1_555 F N3 U 13 Y U 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 F N6 A 5 Y A 31 1_555 F O4 U 13 Y U 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 392 n n N HN1 SAM sing 393 n n N HN2 SAM sing 394 n n CA C SAM sing 395 n n CA CB SAM sing 396 n n CA HA SAM sing 397 n n C O SAM doub 398 n n C OXT SAM sing 399 n n CB CG SAM sing 400 n n CB HB1 SAM sing 401 n n CB HB2 SAM sing 402 n n CG SD SAM sing 403 n n CG HG1 SAM sing 404 n n CG HG2 SAM sing 405 n n SD CE SAM sing 406 n n SD C5' SAM sing 407 n n CE HE1 SAM sing 408 n n CE HE2 SAM sing 409 n n CE HE3 SAM sing 410 n n C5' C4' SAM sing 411 n n C5' "H5'1" SAM sing 412 n n C5' "H5'2" SAM sing 413 n n C4' O4' SAM sing 414 n n C4' C3' SAM sing 415 n n C4' H4' SAM sing 416 n n O4' C1' SAM sing 417 n n C3' O3' SAM sing 418 n n C3' C2' SAM sing 419 n n C3' H3' SAM sing 420 n n O3' HO3' SAM sing 421 n n C2' O2' SAM sing 422 n n C2' C1' SAM sing 423 n n C2' H2' SAM sing 424 n n O2' HO2' SAM sing 425 n n C1' N9 SAM sing 426 n n C1' H1' SAM sing 427 n n N9 C8 SAM sing 428 n y N9 C4 SAM sing 429 n y C8 N7 SAM doub 430 n y C8 H8 SAM sing 431 n n N7 C5 SAM sing 432 n y C5 C6 SAM sing 433 n y C5 C4 SAM doub 434 n y C6 N6 SAM sing 435 n n C6 N1 SAM doub 436 n y N6 HN61 SAM sing 437 n n N6 HN62 SAM sing 438 n n N1 C2 SAM sing 439 n y C2 N3 SAM doub 440 n y C2 H2 SAM sing 441 n n N3 C4 SAM sing 442 n y # _atom_sites.entry_id 8H0S _atom_sites.fract_transf_matrix[1][1] 0.023159 _atom_sites.fract_transf_matrix[1][2] 0.004732 _atom_sites.fract_transf_matrix[1][3] 0.001387 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0168 _atom_sites.fract_transf_matrix[2][3] 0.000476 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 SAM A 1 301 301 SAM SAM . H 3 SAM B 1 301 301 SAM SAM . I 3 SAM C 1 301 301 SAM SAM . J 3 SAM D 1 301 301 SAM SAM . K 4 HOH A 1 401 401 HOH HOH . K 4 HOH A 2 402 402 HOH HOH . K 4 HOH A 3 403 403 HOH HOH . K 4 HOH A 4 404 404 HOH HOH . K 4 HOH A 5 405 405 HOH HOH . K 4 HOH A 6 406 406 HOH HOH . K 4 HOH A 7 407 407 HOH HOH . K 4 HOH A 8 408 408 HOH HOH . K 4 HOH A 9 409 409 HOH HOH . K 4 HOH A 10 410 410 HOH HOH . K 4 HOH A 11 411 411 HOH HOH . K 4 HOH A 12 412 412 HOH HOH . K 4 HOH A 13 413 413 HOH HOH . K 4 HOH A 14 414 414 HOH HOH . K 4 HOH A 15 415 415 HOH HOH . K 4 HOH A 16 416 416 HOH HOH . K 4 HOH A 17 417 417 HOH HOH . K 4 HOH A 18 418 418 HOH HOH . K 4 HOH A 19 419 419 HOH HOH . K 4 HOH A 20 420 420 HOH HOH . K 4 HOH A 21 421 421 HOH HOH . K 4 HOH A 22 422 422 HOH HOH . K 4 HOH A 23 423 423 HOH HOH . L 4 HOH B 1 401 401 HOH HOH . L 4 HOH B 2 402 402 HOH HOH . L 4 HOH B 3 403 403 HOH HOH . L 4 HOH B 4 404 404 HOH HOH . L 4 HOH B 5 405 405 HOH HOH . L 4 HOH B 6 406 406 HOH HOH . L 4 HOH B 7 407 407 HOH HOH . L 4 HOH B 8 408 408 HOH HOH . L 4 HOH B 9 409 409 HOH HOH . L 4 HOH B 10 410 410 HOH HOH . L 4 HOH B 11 411 411 HOH HOH . L 4 HOH B 12 412 412 HOH HOH . L 4 HOH B 13 413 413 HOH HOH . L 4 HOH B 14 414 414 HOH HOH . L 4 HOH B 15 415 415 HOH HOH . L 4 HOH B 16 416 416 HOH HOH . L 4 HOH B 17 417 417 HOH HOH . L 4 HOH B 18 418 418 HOH HOH . L 4 HOH B 19 419 419 HOH HOH . L 4 HOH B 20 420 420 HOH HOH . L 4 HOH B 21 421 421 HOH HOH . L 4 HOH B 22 422 422 HOH HOH . L 4 HOH B 23 423 423 HOH HOH . L 4 HOH B 24 424 424 HOH HOH . L 4 HOH B 25 425 425 HOH HOH . M 4 HOH C 1 401 401 HOH HOH . M 4 HOH C 2 402 402 HOH HOH . M 4 HOH C 3 403 403 HOH HOH . M 4 HOH C 4 404 404 HOH HOH . M 4 HOH C 5 405 405 HOH HOH . M 4 HOH C 6 406 406 HOH HOH . M 4 HOH C 7 407 407 HOH HOH . M 4 HOH C 8 408 408 HOH HOH . M 4 HOH C 9 409 409 HOH HOH . M 4 HOH C 10 410 410 HOH HOH . M 4 HOH C 11 411 411 HOH HOH . M 4 HOH C 12 412 412 HOH HOH . M 4 HOH C 13 413 413 HOH HOH . M 4 HOH C 14 414 414 HOH HOH . M 4 HOH C 15 415 415 HOH HOH . M 4 HOH C 16 416 416 HOH HOH . M 4 HOH C 17 417 417 HOH HOH . M 4 HOH C 18 418 418 HOH HOH . M 4 HOH C 19 419 419 HOH HOH . M 4 HOH C 20 420 420 HOH HOH . M 4 HOH C 21 421 421 HOH HOH . M 4 HOH C 22 422 422 HOH HOH . M 4 HOH C 23 423 423 HOH HOH . M 4 HOH C 24 424 424 HOH HOH . M 4 HOH C 25 425 425 HOH HOH . M 4 HOH C 26 426 426 HOH HOH . M 4 HOH C 27 427 427 HOH HOH . M 4 HOH C 28 428 428 HOH HOH . M 4 HOH C 29 429 429 HOH HOH . N 4 HOH D 1 401 401 HOH HOH . N 4 HOH D 2 402 402 HOH HOH . N 4 HOH D 3 403 403 HOH HOH . N 4 HOH D 4 404 404 HOH HOH . N 4 HOH D 5 405 405 HOH HOH . N 4 HOH D 6 406 406 HOH HOH . N 4 HOH D 7 407 407 HOH HOH . N 4 HOH D 8 408 408 HOH HOH . N 4 HOH D 9 409 409 HOH HOH . N 4 HOH D 10 410 410 HOH HOH . N 4 HOH D 11 411 411 HOH HOH . N 4 HOH D 12 412 412 HOH HOH . O 4 HOH X 1 101 101 HOH HOH . O 4 HOH X 2 102 102 HOH HOH . O 4 HOH X 3 103 103 HOH HOH . O 4 HOH X 4 104 104 HOH HOH . O 4 HOH X 5 105 105 HOH HOH . O 4 HOH X 6 106 106 HOH HOH . O 4 HOH X 7 107 107 HOH HOH . O 4 HOH X 8 108 108 HOH HOH . O 4 HOH X 9 109 109 HOH HOH . O 4 HOH X 10 110 110 HOH HOH . O 4 HOH X 11 111 111 HOH HOH . P 4 HOH Y 1 101 101 HOH HOH . P 4 HOH Y 2 102 102 HOH HOH . P 4 HOH Y 3 103 103 HOH HOH . P 4 HOH Y 4 104 104 HOH HOH . P 4 HOH Y 5 105 105 HOH HOH . P 4 HOH Y 6 106 106 HOH HOH . P 4 HOH Y 7 107 107 HOH HOH . P 4 HOH Y 8 108 108 HOH HOH . P 4 HOH Y 9 109 109 HOH HOH . P 4 HOH Y 10 110 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . I 3 6.335 5.645 -18.425 1 61.5 ? N SAM 301 C 1 HETATM 2 C CA SAM . . . I 3 6.598 4.544 -19.399 1 54.94 ? CA SAM 301 C 1 HETATM 3 C C SAM . . . I 3 8.099 4.436 -19.681 1 53.05 ? C SAM 301 C 1 HETATM 4 O O SAM . . . I 3 8.45 3.686 -20.629 1 52.08 ? O SAM 301 C 1 HETATM 5 O OXT SAM . . . I 3 8.861 5.083 -18.919 1 53.42 ? OXT SAM 301 C 1 HETATM 6 C CB SAM . . . I 3 5.828 4.762 -20.704 1 49.08 ? CB SAM 301 C 1 HETATM 7 C CG SAM . . . I 3 4.354 4.491 -20.515 1 50.92 ? CG SAM 301 C 1 HETATM 8 S SD SAM . . . I 3 3.607 3.918 -22.048 1 50.17 ? SD SAM 301 C 1 HETATM 9 C CE SAM . . . I 3 3.56 5.396 -23.058 1 54.99 ? CE SAM 301 C 1 HETATM 10 C C5' SAM . . . I 3 1.886 3.783 -21.557 1 47.03 ? C5' SAM 301 C 1 HETATM 11 C C4' SAM . . . I 3 1.674 2.699 -20.525 1 47.51 ? C4' SAM 301 C 1 HETATM 12 O O4' SAM . . . I 3 0.35 2.852 -19.97 1 49.08 ? O4' SAM 301 C 1 HETATM 13 C C3' SAM . . . I 3 1.748 1.257 -21.05 1 45.85 ? C3' SAM 301 C 1 HETATM 14 O O3' SAM . . . I 3 2.679 0.477 -20.308 1 39.49 ? O3' SAM 301 C 1 HETATM 15 C C2' SAM . . . I 3 0.315 0.729 -20.889 1 45.36 ? C2' SAM 301 C 1 HETATM 16 O O2' SAM . . . I 3 0.311 -0.659 -20.636 1 39.53 ? O2' SAM 301 C 1 HETATM 17 C C1' SAM . . . I 3 -0.154 1.568 -19.707 1 47.07 ? C1' SAM 301 C 1 HETATM 18 N N9 SAM . . . I 3 -1.597 1.668 -19.503 1 48.26 ? N9 SAM 301 C 1 HETATM 19 C C8 SAM . . . I 3 -2.644 1.641 -20.405 1 47.53 ? C8 SAM 301 C 1 HETATM 20 N N7 SAM . . . I 3 -3.828 1.761 -19.844 1 42.14 ? N7 SAM 301 C 1 HETATM 21 C C5 SAM . . . I 3 -3.535 1.902 -18.491 1 43.53 ? C5 SAM 301 C 1 HETATM 22 C C6 SAM . . . I 3 -4.343 2.07 -17.355 1 42.73 ? C6 SAM 301 C 1 HETATM 23 N N6 SAM . . . I 3 -5.666 2.127 -17.411 1 44.59 ? N6 SAM 301 C 1 HETATM 24 N N1 SAM . . . I 3 -3.733 2.162 -16.148 1 43.12 ? N1 SAM 301 C 1 HETATM 25 C C2 SAM . . . I 3 -2.398 2.085 -16.092 1 43.39 ? C2 SAM 301 C 1 HETATM 26 N N3 SAM . . . I 3 -1.531 1.929 -17.087 1 45.14 ? N3 SAM 301 C 1 HETATM 27 C C4 SAM . . . I 3 -2.17 1.841 -18.27 1 46.03 ? C4 SAM 301 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #