data_8H0T # _model_server_result.job_id CeEaufSf_DfjAwsJ5JOlQQ _model_server_result.datetime_utc '2024-12-22 03:30:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h0t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8H0T # _exptl.entry_id 8H0T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.16 _cell.angle_gamma 90 _cell.entry_id 8H0T _cell.length_a 52.555 _cell.length_b 55.387 _cell.length_c 60.592 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H0T _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -52.555 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 8H0T _atom_sites.fract_transf_matrix[1][1] 0.019028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004447 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 1 SAH SAH . C 3 HOH A 1 401 170 HOH HOH . C 3 HOH A 2 402 182 HOH HOH . C 3 HOH A 3 403 148 HOH HOH . C 3 HOH A 4 404 145 HOH HOH . C 3 HOH A 5 405 4 HOH HOH . C 3 HOH A 6 406 147 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 6 HOH HOH . C 3 HOH A 9 409 50 HOH HOH . C 3 HOH A 10 410 5 HOH HOH . C 3 HOH A 11 411 11 HOH HOH . C 3 HOH A 12 412 21 HOH HOH . C 3 HOH A 13 413 3 HOH HOH . C 3 HOH A 14 414 19 HOH HOH . C 3 HOH A 15 415 12 HOH HOH . C 3 HOH A 16 416 10 HOH HOH . C 3 HOH A 17 417 26 HOH HOH . C 3 HOH A 18 418 27 HOH HOH . C 3 HOH A 19 419 22 HOH HOH . C 3 HOH A 20 420 42 HOH HOH . C 3 HOH A 21 421 15 HOH HOH . C 3 HOH A 22 422 16 HOH HOH . C 3 HOH A 23 423 104 HOH HOH . C 3 HOH A 24 424 184 HOH HOH . C 3 HOH A 25 425 20 HOH HOH . C 3 HOH A 26 426 29 HOH HOH . C 3 HOH A 27 427 23 HOH HOH . C 3 HOH A 28 428 31 HOH HOH . C 3 HOH A 29 429 8 HOH HOH . C 3 HOH A 30 430 25 HOH HOH . C 3 HOH A 31 431 181 HOH HOH . C 3 HOH A 32 432 36 HOH HOH . C 3 HOH A 33 433 14 HOH HOH . C 3 HOH A 34 434 54 HOH HOH . C 3 HOH A 35 435 34 HOH HOH . C 3 HOH A 36 436 13 HOH HOH . C 3 HOH A 37 437 35 HOH HOH . C 3 HOH A 38 438 149 HOH HOH . C 3 HOH A 39 439 67 HOH HOH . C 3 HOH A 40 440 9 HOH HOH . C 3 HOH A 41 441 177 HOH HOH . C 3 HOH A 42 442 38 HOH HOH . C 3 HOH A 43 443 24 HOH HOH . C 3 HOH A 44 444 28 HOH HOH . C 3 HOH A 45 445 46 HOH HOH . C 3 HOH A 46 446 158 HOH HOH . C 3 HOH A 47 447 33 HOH HOH . C 3 HOH A 48 448 39 HOH HOH . C 3 HOH A 49 449 30 HOH HOH . C 3 HOH A 50 450 17 HOH HOH . C 3 HOH A 51 451 41 HOH HOH . C 3 HOH A 52 452 190 HOH HOH . C 3 HOH A 53 453 52 HOH HOH . C 3 HOH A 54 454 51 HOH HOH . C 3 HOH A 55 455 44 HOH HOH . C 3 HOH A 56 456 43 HOH HOH . C 3 HOH A 57 457 47 HOH HOH . C 3 HOH A 58 458 48 HOH HOH . C 3 HOH A 59 459 74 HOH HOH . C 3 HOH A 60 460 71 HOH HOH . C 3 HOH A 61 461 157 HOH HOH . C 3 HOH A 62 462 56 HOH HOH . C 3 HOH A 63 463 58 HOH HOH . C 3 HOH A 64 464 37 HOH HOH . C 3 HOH A 65 465 45 HOH HOH . C 3 HOH A 66 466 53 HOH HOH . C 3 HOH A 67 467 57 HOH HOH . C 3 HOH A 68 468 55 HOH HOH . C 3 HOH A 69 469 90 HOH HOH . C 3 HOH A 70 470 18 HOH HOH . C 3 HOH A 71 471 49 HOH HOH . C 3 HOH A 72 472 61 HOH HOH . C 3 HOH A 73 473 193 HOH HOH . C 3 HOH A 74 474 63 HOH HOH . C 3 HOH A 75 475 199 HOH HOH . C 3 HOH A 76 476 62 HOH HOH . C 3 HOH A 77 477 65 HOH HOH . C 3 HOH A 78 478 192 HOH HOH . C 3 HOH A 79 479 59 HOH HOH . C 3 HOH A 80 480 76 HOH HOH . C 3 HOH A 81 481 40 HOH HOH . C 3 HOH A 82 482 88 HOH HOH . C 3 HOH A 83 483 70 HOH HOH . C 3 HOH A 84 484 64 HOH HOH . C 3 HOH A 85 485 81 HOH HOH . C 3 HOH A 86 486 68 HOH HOH . C 3 HOH A 87 487 84 HOH HOH . C 3 HOH A 88 488 82 HOH HOH . C 3 HOH A 89 489 89 HOH HOH . C 3 HOH A 90 490 60 HOH HOH . C 3 HOH A 91 491 66 HOH HOH . C 3 HOH A 92 492 97 HOH HOH . C 3 HOH A 93 493 79 HOH HOH . C 3 HOH A 94 494 178 HOH HOH . C 3 HOH A 95 495 72 HOH HOH . C 3 HOH A 96 496 80 HOH HOH . C 3 HOH A 97 497 106 HOH HOH . C 3 HOH A 98 498 146 HOH HOH . C 3 HOH A 99 499 83 HOH HOH . C 3 HOH A 100 500 196 HOH HOH . C 3 HOH A 101 501 168 HOH HOH . C 3 HOH A 102 502 87 HOH HOH . C 3 HOH A 103 503 93 HOH HOH . C 3 HOH A 104 504 91 HOH HOH . C 3 HOH A 105 505 86 HOH HOH . C 3 HOH A 106 506 95 HOH HOH . C 3 HOH A 107 507 75 HOH HOH . C 3 HOH A 108 508 173 HOH HOH . C 3 HOH A 109 509 85 HOH HOH . C 3 HOH A 110 510 187 HOH HOH . C 3 HOH A 111 511 94 HOH HOH . C 3 HOH A 112 512 92 HOH HOH . C 3 HOH A 113 513 78 HOH HOH . C 3 HOH A 114 514 32 HOH HOH . C 3 HOH A 115 515 77 HOH HOH . C 3 HOH A 116 516 102 HOH HOH . C 3 HOH A 117 517 101 HOH HOH . C 3 HOH A 118 518 200 HOH HOH . C 3 HOH A 119 519 100 HOH HOH . C 3 HOH A 120 520 69 HOH HOH . C 3 HOH A 121 521 98 HOH HOH . C 3 HOH A 122 522 113 HOH HOH . C 3 HOH A 123 523 195 HOH HOH . C 3 HOH A 124 524 103 HOH HOH . C 3 HOH A 125 525 105 HOH HOH . C 3 HOH A 126 526 155 HOH HOH . C 3 HOH A 127 527 96 HOH HOH . C 3 HOH A 128 528 114 HOH HOH . C 3 HOH A 129 529 112 HOH HOH . C 3 HOH A 130 530 107 HOH HOH . C 3 HOH A 131 531 198 HOH HOH . C 3 HOH A 132 532 111 HOH HOH . C 3 HOH A 133 533 176 HOH HOH . C 3 HOH A 134 534 109 HOH HOH . C 3 HOH A 135 535 116 HOH HOH . C 3 HOH A 136 536 108 HOH HOH . C 3 HOH A 137 537 180 HOH HOH . C 3 HOH A 138 538 110 HOH HOH . C 3 HOH A 139 539 189 HOH HOH . C 3 HOH A 140 540 115 HOH HOH . C 3 HOH A 141 541 165 HOH HOH . C 3 HOH A 142 542 118 HOH HOH . C 3 HOH A 143 543 73 HOH HOH . C 3 HOH A 144 544 120 HOH HOH . C 3 HOH A 145 545 119 HOH HOH . C 3 HOH A 146 546 99 HOH HOH . C 3 HOH A 147 547 121 HOH HOH . C 3 HOH A 148 548 152 HOH HOH . C 3 HOH A 149 549 164 HOH HOH . C 3 HOH A 150 550 2 HOH HOH . C 3 HOH A 151 551 169 HOH HOH . C 3 HOH A 152 552 123 HOH HOH . C 3 HOH A 153 553 122 HOH HOH . C 3 HOH A 154 554 126 HOH HOH . C 3 HOH A 155 555 156 HOH HOH . C 3 HOH A 156 556 124 HOH HOH . C 3 HOH A 157 557 125 HOH HOH . C 3 HOH A 158 558 191 HOH HOH . C 3 HOH A 159 559 127 HOH HOH . C 3 HOH A 160 560 128 HOH HOH . C 3 HOH A 161 561 183 HOH HOH . C 3 HOH A 162 562 129 HOH HOH . C 3 HOH A 163 563 159 HOH HOH . C 3 HOH A 164 564 132 HOH HOH . C 3 HOH A 165 565 150 HOH HOH . C 3 HOH A 166 566 130 HOH HOH . C 3 HOH A 167 567 161 HOH HOH . C 3 HOH A 168 568 131 HOH HOH . C 3 HOH A 169 569 134 HOH HOH . C 3 HOH A 170 570 133 HOH HOH . C 3 HOH A 171 571 135 HOH HOH . C 3 HOH A 172 572 136 HOH HOH . C 3 HOH A 173 573 162 HOH HOH . C 3 HOH A 174 574 172 HOH HOH . C 3 HOH A 175 575 137 HOH HOH . C 3 HOH A 176 576 160 HOH HOH . C 3 HOH A 177 577 138 HOH HOH . C 3 HOH A 178 578 139 HOH HOH . C 3 HOH A 179 579 194 HOH HOH . C 3 HOH A 180 580 140 HOH HOH . C 3 HOH A 181 581 142 HOH HOH . C 3 HOH A 182 582 151 HOH HOH . C 3 HOH A 183 583 141 HOH HOH . C 3 HOH A 184 584 179 HOH HOH . C 3 HOH A 185 585 143 HOH HOH . C 3 HOH A 186 586 166 HOH HOH . C 3 HOH A 187 587 144 HOH HOH . C 3 HOH A 188 588 186 HOH HOH . C 3 HOH A 189 589 197 HOH HOH . C 3 HOH A 190 590 185 HOH HOH . C 3 HOH A 191 591 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -26.115 0.457 19.895 1 10.22 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . B 2 -26.864 0.834 21.115 1 9.08 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . B 2 -27.451 2.237 21.035 1 10.45 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . B 2 -26.394 3.322 21.167 1 9.25 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . B 2 -27.196 4.923 21.322 1 8.92 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . B 2 -27.942 -0.216 21.413 1 11.8 ? C SAH 301 A 1 HETATM 7 O O SAH . . . B 2 -27.979 -1.2 20.657 1 22.29 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . B 2 -28.71 0.026 22.362 1 14.74 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . B 2 -25.784 6.033 21.454 1 10.45 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . B 2 -24.949 5.84 22.727 1 9.64 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . B 2 -23.744 6.625 22.555 1 10.95 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . B 2 -25.589 6.246 24.083 1 6.55 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . B 2 -25.787 5.13 24.905 1 6.88 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . B 2 -24.599 7.289 24.581 1 8.73 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . B 2 -24.428 7.29 26.004 1 8.75 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . B 2 -23.323 6.848 23.903 1 10.59 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . B 2 -22.278 7.845 23.858 1 9.57 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . B 2 -22.37 9.208 23.751 1 9.14 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . B 2 -21.192 9.788 23.694 1 8.08 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . B 2 -20.276 8.755 23.746 1 8.94 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . B 2 -18.866 8.725 23.751 1 10.65 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . B 2 -18.119 9.811 23.709 1 10.92 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . B 2 -18.251 7.525 23.838 1 12.01 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . B 2 -19.021 6.444 23.903 1 10.03 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . B 2 -20.355 6.359 23.937 1 8.2 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . B 2 -20.931 7.558 23.842 1 9.52 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #