data_8H13 # _model_server_result.job_id QOQRkf5SJBk_rmeM9MENWA _model_server_result.datetime_utc '2024-11-21 09:27:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1203}' # _entry.id 8H13 # _exptl.entry_id 8H13 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 21 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8H13 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 264 A CYS 278 1_555 A SG CYS 274 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 309 A CYS 323 1_555 A SG CYS 334 A CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 352 A CYS 366 1_555 A SG CYS 405 A CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 364 A CYS 378 1_555 A SG CYS 497 A CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 386 A CYS 400 1_555 C SG CYS 955 C CYS 969 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? disulf ? disulf6 A SG CYS 510 A CYS 524 1_555 A SG CYS 562 A CYS 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 A SG CYS 589 A CYS 603 1_555 A SG CYS 621 A CYS 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 A SG CYS 634 A CYS 648 1_555 A SG CYS 643 A CYS 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 A SG CYS 706 A CYS 720 1_555 A SG CYS 728 A CYS 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 A SG CYS 711 A CYS 725 1_555 A SG CYS 717 A CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 A SG CYS 955 A CYS 969 1_555 B SG CYS 386 B CYS 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? disulf ? disulf12 A SG CYS 1000 A CYS 1014 1_555 A SG CYS 1011 A CYS 1025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf13 A SG CYS 1050 A CYS 1064 1_555 A SG CYS 1094 A CYS 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf14 B SG CYS 264 B CYS 278 1_555 B SG CYS 274 B CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf15 B SG CYS 309 B CYS 323 1_555 B SG CYS 334 B CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf16 B SG CYS 352 B CYS 366 1_555 B SG CYS 405 B CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf17 B SG CYS 364 B CYS 378 1_555 B SG CYS 497 B CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf18 B SG CYS 510 B CYS 524 1_555 B SG CYS 562 B CYS 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf19 B SG CYS 589 B CYS 603 1_555 B SG CYS 621 B CYS 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf20 B SG CYS 634 B CYS 648 1_555 B SG CYS 643 B CYS 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf21 B SG CYS 706 B CYS 720 1_555 B SG CYS 728 B CYS 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf22 B SG CYS 711 B CYS 725 1_555 B SG CYS 717 B CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf23 B SG CYS 955 B CYS 969 1_555 C SG CYS 386 C CYS 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf24 B SG CYS 1000 B CYS 1014 1_555 B SG CYS 1011 B CYS 1025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf25 B SG CYS 1050 B CYS 1064 1_555 B SG CYS 1094 B CYS 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf26 C SG CYS 264 C CYS 278 1_555 C SG CYS 274 C CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf27 C SG CYS 309 C CYS 323 1_555 C SG CYS 334 C CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf28 C SG CYS 352 C CYS 366 1_555 C SG CYS 405 C CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf29 C SG CYS 364 C CYS 378 1_555 C SG CYS 497 C CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf30 C SG CYS 510 C CYS 524 1_555 C SG CYS 562 C CYS 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf31 C SG CYS 589 C CYS 603 1_555 C SG CYS 621 C CYS 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf32 C SG CYS 634 C CYS 648 1_555 C SG CYS 643 C CYS 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf33 C SG CYS 706 C CYS 720 1_555 C SG CYS 728 C CYS 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf34 C SG CYS 711 C CYS 725 1_555 C SG CYS 717 C CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf35 C SG CYS 1000 C CYS 1014 1_555 C SG CYS 1011 C CYS 1025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf36 C SG CYS 1050 C CYS 1064 1_555 C SG CYS 1094 C CYS 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 304 A ASN 318 1_555 E C1 NAG . A NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 588 A ASN 602 1_555 F C1 NAG . A NAG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 677 A ASN 691 1_555 G C1 NAG . A NAG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 A ND2 ASN 685 A ASN 699 1_555 H C1 NAG . A NAG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 A ND2 ASN 769 A ASN 783 1_555 I C1 NAG . A NAG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 A ND2 ASN 1042 A ASN 1056 1_555 J C1 NAG . A NAG 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 A ND2 ASN 1066 A ASN 1080 1_555 D C1 NAG . A NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 B ND2 ASN 304 B ASN 318 1_555 L C1 NAG . B NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 B ND2 ASN 588 B ASN 602 1_555 M C1 NAG . B NAG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale10 B ND2 ASN 677 B ASN 691 1_555 N C1 NAG . B NAG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale11 B ND2 ASN 685 B ASN 699 1_555 O C1 NAG . B NAG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale12 B ND2 ASN 769 B ASN 783 1_555 P C1 NAG . B NAG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale13 B ND2 ASN 1042 B ASN 1056 1_555 Q C1 NAG . B NAG 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale14 B ND2 ASN 1066 B ASN 1080 1_555 K C1 NAG . B NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale15 C ND2 ASN 304 C ASN 318 1_555 S C1 NAG . C NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale16 C ND2 ASN 588 C ASN 602 1_555 T C1 NAG . C NAG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale17 C ND2 ASN 677 C ASN 691 1_555 U C1 NAG . C NAG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale18 C ND2 ASN 685 C ASN 699 1_555 V C1 NAG . C NAG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale19 C ND2 ASN 769 C ASN 783 1_555 W C1 NAG . C NAG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale20 C ND2 ASN 1042 C ASN 1056 1_555 X C1 NAG . C NAG 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale21 C ND2 ASN 1066 C ASN 1080 1_555 R C1 NAG . C NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8H13 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAG A 1 1201 2080 NAG NAG . E 2 NAG A 1 1202 2318 NAG NAG . F 2 NAG A 1 1203 2602 NAG NAG . G 2 NAG A 1 1204 2691 NAG NAG . H 2 NAG A 1 1205 2699 NAG NAG . I 2 NAG A 1 1206 2783 NAG NAG . J 2 NAG A 1 1207 3056 NAG NAG . K 2 NAG B 1 1201 2080 NAG NAG . L 2 NAG B 1 1202 2318 NAG NAG . M 2 NAG B 1 1203 2602 NAG NAG . N 2 NAG B 1 1204 2691 NAG NAG . O 2 NAG B 1 1205 2699 NAG NAG . P 2 NAG B 1 1206 2783 NAG NAG . Q 2 NAG B 1 1207 3056 NAG NAG . R 2 NAG C 1 1201 2080 NAG NAG . S 2 NAG C 1 1202 2318 NAG NAG . T 2 NAG C 1 1203 2602 NAG NAG . U 2 NAG C 1 1204 2691 NAG NAG . V 2 NAG C 1 1205 2699 NAG NAG . W 2 NAG C 1 1206 2783 NAG NAG . X 2 NAG C 1 1207 3056 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 2 201.607 148.963 156.343 1 75.05 ? C1 NAG 1203 B 1 HETATM 2 C C2 NAG . . . M 2 201.98 149.619 155.016 1 75.05 ? C2 NAG 1203 B 1 HETATM 3 C C3 NAG . . . M 2 203.335 149.101 154.541 1 75.05 ? C3 NAG 1203 B 1 HETATM 4 C C4 NAG . . . M 2 204.39 149.301 155.622 1 75.05 ? C4 NAG 1203 B 1 HETATM 5 C C5 NAG . . . M 2 203.928 148.685 156.942 1 75.05 ? C5 NAG 1203 B 1 HETATM 6 C C6 NAG . . . M 2 204.863 148.983 158.091 1 75.05 ? C6 NAG 1203 B 1 HETATM 7 C C7 NAG . . . M 2 200.47 150.357 153.232 1 75.05 ? C7 NAG 1203 B 1 HETATM 8 C C8 NAG . . . M 2 199.427 149.943 152.241 1 75.05 ? C8 NAG 1203 B 1 HETATM 9 N N2 NAG . . . M 2 200.961 149.385 154.007 1 75.05 ? N2 NAG 1203 B 1 HETATM 10 O O3 NAG . . . M 2 203.716 149.785 153.353 1 75.05 ? O3 NAG 1203 B 1 HETATM 11 O O4 NAG . . . M 2 205.613 148.692 155.224 1 75.05 ? O4 NAG 1203 B 1 HETATM 12 O O5 NAG . . . M 2 202.642 149.211 157.311 1 75.05 ? O5 NAG 1203 B 1 HETATM 13 O O6 NAG . . . M 2 204.499 150.184 158.757 1 75.05 ? O6 NAG 1203 B 1 HETATM 14 O O7 NAG . . . M 2 200.852 151.518 153.327 1 75.05 ? O7 NAG 1203 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #