data_8H1E # _model_server_result.job_id 3_DsjZkksmqx72SNXOHxqw _model_server_result.datetime_utc '2025-04-11 22:34:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h1e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8H1E # _exptl.entry_id 8H1E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8H1E _cell.length_a 35.631 _cell.length_b 35.631 _cell.length_c 167.819 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H1E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 30 A HIS 353 1_555 D MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 A OE1 GLU 34 A GLU 357 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc3 A OE2 GLU 34 A GLU 357 1_555 D MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc4 A OD1 ASP 43 A ASP 366 1_555 G MN MN . A MN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc5 A OD2 ASP 43 A ASP 366 1_555 G MN MN . A MN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc6 A SG CYS 48 A CYS 371 1_555 D MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc7 A SG CYS 48 A CYS 371 1_555 E MN MN . A MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc8 A OE1 GLU 61 A GLU 384 1_555 F MN MN . A MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc9 A OE2 GLU 61 A GLU 384 1_555 F MN MN . A MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc10 A SG CYS 79 A CYS 402 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc11 A ND1 HIS 81 A HIS 404 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc12 A OE2 GLU 93 A GLU 416 1_555 H MN MN . A MN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc13 A OE2 GLU 96 A GLU 419 1_555 H MN MN . A MN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc14 A O TYR 102 A TYR 425 1_555 F MN MN . A MN 505 7_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc15 A OXT TYR 102 A TYR 425 1_555 F MN MN . A MN 505 7_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc16 C MN MN . A MN 502 1_555 I O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc17 C MN MN . A MN 502 1_555 I O HOH . A HOH 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc18 D MN MN . A MN 503 1_555 I O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc19 D MN MN . A MN 503 1_555 I O HOH . A HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc20 D MN MN . A MN 503 1_555 I O HOH . A HOH 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc21 E MN MN . A MN 504 1_555 I O HOH . A HOH 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc22 E MN MN . A MN 504 1_555 I O HOH . A HOH 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc23 E MN MN . A MN 504 1_555 I O HOH . A HOH 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc24 F MN MN . A MN 505 1_555 I O HOH . A HOH 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc25 F MN MN . A MN 505 1_555 I O HOH . A HOH 658 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc26 G MN MN . A MN 506 1_555 I O HOH . A HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 8H1E _atom_sites.fract_transf_matrix[1][1] 0.028065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 501 1 PEG PEG . C 3 MN A 1 502 1 MN MN . D 3 MN A 1 503 2 MN MN . E 3 MN A 1 504 3 MN MN . F 3 MN A 1 505 4 MN MN . G 3 MN A 1 506 5 MN MN . H 3 MN A 1 507 6 MN MN . I 4 HOH A 1 601 44 HOH HOH . I 4 HOH A 2 602 16 HOH HOH . I 4 HOH A 3 603 10 HOH HOH . I 4 HOH A 4 604 43 HOH HOH . I 4 HOH A 5 605 33 HOH HOH . I 4 HOH A 6 606 32 HOH HOH . I 4 HOH A 7 607 49 HOH HOH . I 4 HOH A 8 608 23 HOH HOH . I 4 HOH A 9 609 28 HOH HOH . I 4 HOH A 10 610 9 HOH HOH . I 4 HOH A 11 611 27 HOH HOH . I 4 HOH A 12 612 50 HOH HOH . I 4 HOH A 13 613 13 HOH HOH . I 4 HOH A 14 614 53 HOH HOH . I 4 HOH A 15 615 51 HOH HOH . I 4 HOH A 16 616 25 HOH HOH . I 4 HOH A 17 617 7 HOH HOH . I 4 HOH A 18 618 57 HOH HOH . I 4 HOH A 19 619 21 HOH HOH . I 4 HOH A 20 620 8 HOH HOH . I 4 HOH A 21 621 56 HOH HOH . I 4 HOH A 22 622 35 HOH HOH . I 4 HOH A 23 623 54 HOH HOH . I 4 HOH A 24 624 37 HOH HOH . I 4 HOH A 25 625 47 HOH HOH . I 4 HOH A 26 626 4 HOH HOH . I 4 HOH A 27 627 42 HOH HOH . I 4 HOH A 28 628 40 HOH HOH . I 4 HOH A 29 629 14 HOH HOH . I 4 HOH A 30 630 30 HOH HOH . I 4 HOH A 31 631 19 HOH HOH . I 4 HOH A 32 632 31 HOH HOH . I 4 HOH A 33 633 29 HOH HOH . I 4 HOH A 34 634 45 HOH HOH . I 4 HOH A 35 635 52 HOH HOH . I 4 HOH A 36 636 18 HOH HOH . I 4 HOH A 37 637 36 HOH HOH . I 4 HOH A 38 638 48 HOH HOH . I 4 HOH A 39 639 46 HOH HOH . I 4 HOH A 40 640 55 HOH HOH . I 4 HOH A 41 641 3 HOH HOH . I 4 HOH A 42 642 12 HOH HOH . I 4 HOH A 43 643 6 HOH HOH . I 4 HOH A 44 644 17 HOH HOH . I 4 HOH A 45 645 20 HOH HOH . I 4 HOH A 46 646 11 HOH HOH . I 4 HOH A 47 647 1 HOH HOH . I 4 HOH A 48 648 69 HOH HOH . I 4 HOH A 49 649 2 HOH HOH . I 4 HOH A 50 650 24 HOH HOH . I 4 HOH A 51 651 22 HOH HOH . I 4 HOH A 52 652 71 HOH HOH . I 4 HOH A 53 653 15 HOH HOH . I 4 HOH A 54 654 65 HOH HOH . I 4 HOH A 55 655 67 HOH HOH . I 4 HOH A 56 656 38 HOH HOH . I 4 HOH A 57 657 61 HOH HOH . I 4 HOH A 58 658 63 HOH HOH . I 4 HOH A 59 659 5 HOH HOH . I 4 HOH A 60 660 39 HOH HOH . I 4 HOH A 61 661 60 HOH HOH . I 4 HOH A 62 662 41 HOH HOH . I 4 HOH A 63 663 62 HOH HOH . I 4 HOH A 64 664 34 HOH HOH . I 4 HOH A 65 665 26 HOH HOH . I 4 HOH A 66 666 68 HOH HOH . I 4 HOH A 67 667 58 HOH HOH . I 4 HOH A 68 668 64 HOH HOH . I 4 HOH A 69 669 66 HOH HOH . I 4 HOH A 70 670 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . B 2 -2.42 -23.733 8.034 1 25.34 ? C1 PEG 501 A 1 HETATM 2 O O1 PEG . . . B 2 -1.895 -25.039 8.284 1 29.14 ? O1 PEG 501 A 1 HETATM 3 C C2 PEG . . . B 2 -3.914 -23.687 8.351 1 25.78 ? C2 PEG 501 A 1 HETATM 4 O O2 PEG . . . B 2 -4.596 -24.34 7.269 1 26.81 ? O2 PEG 501 A 1 HETATM 5 C C3 PEG . . . B 2 -6.012 -24.363 7.418 1 25.64 ? C3 PEG 501 A 1 HETATM 6 C C4 PEG . . . B 2 -6.588 -25.634 6.809 1 28.34 ? C4 PEG 501 A 1 HETATM 7 O O4 PEG . . . B 2 -5.61 -26.282 5.99 1 32.81 ? O4 PEG 501 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #