data_8H2X
#
_model_server_result.job_id            0Cq07U_pjgzLwCCfMYiAAg 
_model_server_result.datetime_utc      '2024-11-24 03:44:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8h2x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":102}' 
#
_entry.id    8H2X 
#
_exptl.entry_id    8H2X 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8H2X 
_cell.length_a            101.866 
_cell.length_b            101.866 
_cell.length_c            101.655 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8H2X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
PISA hexameric 6 author_and_software_defined_assembly 3 
PISA hexameric 6 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,I,V 1 1,2,4,6,8,10 
B,D,J,K,O,P,Q,W,Y 2 1,3,5 
C,L,M,N,X 3 1,2,4,7,9,11 
E,F,R,S,T,U,Z,AA 4 1,3,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -50.933 88.218544 0 
4 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
5 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -101.866 0 0 
6 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 101.655 
7 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
8 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 101.655 
9 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
10 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 101.655 
11 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     8H2X 
_atom_sites.fract_transf_matrix[1][1]    0.009817 
_atom_sites.fract_transf_matrix[1][2]    0.005668 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011335 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009837 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 EDO A 1 101 101 EDO EDO . 
H 2 EDO A 1 102 201 EDO EDO . 
I 3 GOL A 1 103 301 GOL GOL . 
J 2 EDO B 1 101 101 EDO EDO . 
K 2 EDO B 1 102 201 EDO EDO . 
L 2 EDO C 1 101 101 EDO EDO . 
M 2 EDO C 1 102 201 EDO EDO . 
N 2 EDO C 1 103 301 EDO EDO . 
O 2 EDO D 1 101 101 EDO EDO . 
P 2 EDO D 1 102 201 EDO EDO . 
Q 2 EDO D 1 103 301 EDO EDO . 
R 2 EDO E 1 101 101 EDO EDO . 
S 2 EDO E 1 102 201 EDO EDO . 
T 2 EDO F 1 101 101 EDO EDO . 
U 2 EDO F 1 102 201 EDO EDO . 
V 4 HOH A 1 201 23 HOH HOH . 
V 4 HOH A 2 202 64 HOH HOH . 
V 4 HOH A 3 203 18 HOH HOH . 
V 4 HOH A 4 204 1 HOH HOH . 
V 4 HOH A 5 205 24 HOH HOH . 
V 4 HOH A 6 206 58 HOH HOH . 
V 4 HOH A 7 207 17 HOH HOH . 
V 4 HOH A 8 208 13 HOH HOH . 
V 4 HOH A 9 209 11 HOH HOH . 
V 4 HOH A 10 210 25 HOH HOH . 
V 4 HOH A 11 211 49 HOH HOH . 
V 4 HOH A 12 212 21 HOH HOH . 
V 4 HOH A 13 213 42 HOH HOH . 
V 4 HOH A 14 214 26 HOH HOH . 
V 4 HOH A 15 215 44 HOH HOH . 
V 4 HOH A 16 216 36 HOH HOH . 
V 4 HOH A 17 217 32 HOH HOH . 
V 4 HOH A 18 218 74 HOH HOH . 
V 4 HOH A 19 219 76 HOH HOH . 
V 4 HOH A 20 220 27 HOH HOH . 
V 4 HOH A 21 221 6 HOH HOH . 
V 4 HOH A 22 222 66 HOH HOH . 
W 4 HOH B 1 201 67 HOH HOH . 
W 4 HOH B 2 202 68 HOH HOH . 
W 4 HOH B 3 203 83 HOH HOH . 
W 4 HOH B 4 204 19 HOH HOH . 
W 4 HOH B 5 205 7 HOH HOH . 
W 4 HOH B 6 206 40 HOH HOH . 
W 4 HOH B 7 207 16 HOH HOH . 
W 4 HOH B 8 208 75 HOH HOH . 
W 4 HOH B 9 209 73 HOH HOH . 
X 4 HOH C 1 201 47 HOH HOH . 
X 4 HOH C 2 202 38 HOH HOH . 
X 4 HOH C 3 203 12 HOH HOH . 
X 4 HOH C 4 204 48 HOH HOH . 
X 4 HOH C 5 205 51 HOH HOH . 
X 4 HOH C 6 206 69 HOH HOH . 
X 4 HOH C 7 207 50 HOH HOH . 
X 4 HOH C 8 208 80 HOH HOH . 
X 4 HOH C 9 209 35 HOH HOH . 
X 4 HOH C 10 210 28 HOH HOH . 
X 4 HOH C 11 211 34 HOH HOH . 
X 4 HOH C 12 212 45 HOH HOH . 
X 4 HOH C 13 213 2 HOH HOH . 
X 4 HOH C 14 214 10 HOH HOH . 
X 4 HOH C 15 215 37 HOH HOH . 
X 4 HOH C 16 216 20 HOH HOH . 
X 4 HOH C 17 217 41 HOH HOH . 
X 4 HOH C 18 218 65 HOH HOH . 
X 4 HOH C 19 219 84 HOH HOH . 
X 4 HOH C 20 220 85 HOH HOH . 
X 4 HOH C 21 221 14 HOH HOH . 
X 4 HOH C 22 222 4 HOH HOH . 
Y 4 HOH D 1 201 79 HOH HOH . 
Y 4 HOH D 2 202 54 HOH HOH . 
Y 4 HOH D 3 203 77 HOH HOH . 
Y 4 HOH D 4 204 5 HOH HOH . 
Y 4 HOH D 5 205 71 HOH HOH . 
Y 4 HOH D 6 206 30 HOH HOH . 
Y 4 HOH D 7 207 52 HOH HOH . 
Y 4 HOH D 8 208 55 HOH HOH . 
Y 4 HOH D 9 209 61 HOH HOH . 
Y 4 HOH D 10 210 53 HOH HOH . 
Y 4 HOH D 11 211 56 HOH HOH . 
Y 4 HOH D 12 212 33 HOH HOH . 
Y 4 HOH D 13 213 29 HOH HOH . 
Y 4 HOH D 14 214 82 HOH HOH . 
Z 4 HOH E 1 201 39 HOH HOH . 
Z 4 HOH E 2 202 31 HOH HOH . 
Z 4 HOH E 3 203 43 HOH HOH . 
Z 4 HOH E 4 204 62 HOH HOH . 
Z 4 HOH E 5 205 46 HOH HOH . 
Z 4 HOH E 6 206 81 HOH HOH . 
Z 4 HOH E 7 207 70 HOH HOH . 
Z 4 HOH E 8 208 78 HOH HOH . 
AA 4 HOH F 1 201 60 HOH HOH . 
AA 4 HOH F 2 202 8 HOH HOH . 
AA 4 HOH F 3 203 57 HOH HOH . 
AA 4 HOH F 4 204 63 HOH HOH . 
AA 4 HOH F 5 205 59 HOH HOH . 
AA 4 HOH F 6 206 22 HOH HOH . 
AA 4 HOH F 7 207 15 HOH HOH . 
AA 4 HOH F 8 208 72 HOH HOH . 
AA 4 HOH F 9 209 3 HOH HOH . 
AA 4 HOH F 10 210 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 2 -6.534 -9.638 17.312 1 42.19 ? C1 EDO 102 C 1 
HETATM 2 O O1 EDO . . . M 2 -5.921 -10.838 17.727 1 41.86 ? O1 EDO 102 C 1 
HETATM 3 C C2 EDO . . . M 2 -5.538 -8.652 16.775 1 39.56 ? C2 EDO 102 C 1 
HETATM 4 O O2 EDO . . . M 2 -4.631 -9.329 15.992 1 35.04 ? O2 EDO 102 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#