data_8H4Q # _model_server_result.job_id 9Ztr9fg_DFORpjvbH7LqAA _model_server_result.datetime_utc '2025-06-23 20:48:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h4q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 8H4Q # _exptl.entry_id 8H4Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.22 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8H4Q _cell.length_a 71.125 _cell.length_b 264.071 _cell.length_c 163.897 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H4Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -81.9485 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C11 H15 N2 O7 P' _chem_comp.formula_weight 318.22 _chem_comp.id P1T _chem_comp.mon_nstd_flag . _chem_comp.name '2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OP1 P P1T sing 237 n n OP1 HOP1 P1T sing 238 n n P OP2 P1T doub 239 n n P OP4 P1T sing 240 n n P OP3 P1T sing 241 n n OP3 HOP3 P1T sing 242 n n OP4 C5A P1T sing 243 n n C5A C5 P1T sing 244 n n C5A H5A1 P1T sing 245 n n C5A H5A2 P1T sing 246 n n C5 C4 P1T sing 247 n y C5 C6 P1T doub 248 n y C6 N1 P1T sing 249 n y C6 H6 P1T sing 250 n n N1 C2 P1T doub 251 n y C2 C3 P1T sing 252 n y C2 C2A P1T sing 253 n n C2A H2A1 P1T sing 254 n n C2A H2A2 P1T sing 255 n n C2A H2A3 P1T sing 256 n n C3 O3A P1T sing 257 n n C3 C4 P1T doub 258 n y O3A HO3A P1T sing 259 n n C4 C4A P1T sing 260 n n C4A N P1T sing 261 n n C4A H4A1 P1T sing 262 n n C4A H4A2 P1T sing 263 n n N CA P1T sing 264 n n N HN P1T sing 265 n n CA C P1T sing 266 n n CA CB P1T doub 267 n n CB HB1 P1T sing 268 n n CB HB2 P1T sing 269 n n C OXT P1T doub 270 n n C O P1T sing 271 n n O HO P1T sing 272 n n # _atom_sites.entry_id 8H4Q _atom_sites.fract_transf_matrix[1][1] 0.01406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P1T N 1 601 2 P1T P1T . D 2 P1T A 1 601 1 P1T P1T . E 3 HOH N 1 701 12 HOH HOH . E 3 HOH N 2 702 4 HOH HOH . E 3 HOH N 3 703 14 HOH HOH . E 3 HOH N 4 704 16 HOH HOH . E 3 HOH N 5 705 5 HOH HOH . F 3 HOH A 1 701 17 HOH HOH . F 3 HOH A 2 702 3 HOH HOH . F 3 HOH A 3 703 6 HOH HOH . F 3 HOH A 4 704 13 HOH HOH . F 3 HOH A 5 705 15 HOH HOH . F 3 HOH A 6 706 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OP1 P1T . . . D 2 10.049 8.399 -58.56 1 63.88 ? OP1 P1T 601 A 1 HETATM 2 P P P1T . . . D 2 8.708 8.174 -57.911 1 70.41 ? P P1T 601 A 1 HETATM 3 O OP2 P1T . . . D 2 8.056 6.986 -58.573 1 68.93 ? OP2 P1T 601 A 1 HETATM 4 O OP3 P1T . . . D 2 7.83 9.383 -58.115 1 73.29 ? OP3 P1T 601 A 1 HETATM 5 O OP4 P1T . . . D 2 8.891 7.913 -56.283 1 70.14 ? OP4 P1T 601 A 1 HETATM 6 C C5A P1T . . . D 2 9.345 6.666 -55.808 1 69.22 ? C5A P1T 601 A 1 HETATM 7 C C5 P1T . . . D 2 8.588 6.154 -54.569 1 67.32 ? C5 P1T 601 A 1 HETATM 8 C C6 P1T . . . D 2 9.184 6.169 -53.319 1 68.02 ? C6 P1T 601 A 1 HETATM 9 N N1 P1T . . . D 2 8.514 5.7 -52.236 1 73.64 ? N1 P1T 601 A 1 HETATM 10 C C2 P1T . . . D 2 7.26 5.211 -52.355 1 69.28 ? C2 P1T 601 A 1 HETATM 11 C C2A P1T . . . D 2 6.518 4.69 -51.127 1 68.31 ? C2A P1T 601 A 1 HETATM 12 C C3 P1T . . . D 2 6.662 5.19 -53.6 1 64.13 ? C3 P1T 601 A 1 HETATM 13 O O3A P1T . . . D 2 5.365 4.685 -53.738 1 60.55 ? O3A P1T 601 A 1 HETATM 14 C C4 P1T . . . D 2 7.333 5.657 -54.685 1 69.71 ? C4 P1T 601 A 1 HETATM 15 C C4A P1T . . . D 2 6.671 5.631 -56.053 1 65.95 ? C4A P1T 601 A 1 HETATM 16 N N P1T . . . D 2 5.697 4.564 -56.082 1 67.04 ? N P1T 601 A 1 HETATM 17 C CA P1T . . . D 2 4.856 4.454 -57.228 1 70.57 ? CA P1T 601 A 1 HETATM 18 C CB P1T . . . D 2 5.539 4.12 -58.288 1 61.1 ? CB P1T 601 A 1 HETATM 19 C C P1T . . . D 2 3.5 3.795 -57.205 1 68.62 ? C P1T 601 A 1 HETATM 20 O O P1T . . . D 2 2.814 3.773 -56.144 1 70.02 ? O P1T 601 A 1 HETATM 21 O OXT P1T . . . D 2 3.069 3.257 -58.258 1 64.14 ? OXT P1T 601 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #