data_8H4R # _model_server_result.job_id 3hxAkpxgE-I3GiNKIKB4zA _model_server_result.datetime_utc '2024-11-24 12:40:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h4r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":407}' # _entry.id 8H4R # _exptl.entry_id 8H4R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8H4R _cell.length_a 155.027 _cell.length_b 155.027 _cell.length_c 76.788 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H4R _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 387 A TYR 159 1_555 A N TPO 388 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C TPO 388 A TPO 160 1_555 A N HIS 389 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 190 n n C1 C2 GOL sing 191 n n C1 H11 GOL sing 192 n n C1 H12 GOL sing 193 n n O1 HO1 GOL sing 194 n n C2 O2 GOL sing 195 n n C2 C3 GOL sing 196 n n C2 H2 GOL sing 197 n n O2 HO2 GOL sing 198 n n C3 O3 GOL sing 199 n n C3 H31 GOL sing 200 n n C3 H32 GOL sing 201 n n O3 HO3 GOL sing 202 n n # _atom_sites.entry_id 8H4R _atom_sites.fract_transf_matrix[1][1] 0.00645 _atom_sites.fract_transf_matrix[1][2] 0.003724 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 1QK A 1 401 1 1QK 1QK . D 4 SO4 A 1 402 5 SO4 SO4 . E 5 GOL A 1 403 2 GOL GOL . F 4 SO4 B 1 401 1 SO4 SO4 . G 4 SO4 B 1 402 2 SO4 SO4 . H 4 SO4 B 1 403 3 SO4 SO4 . I 4 SO4 B 1 404 4 SO4 SO4 . J 4 SO4 B 1 405 6 SO4 SO4 . K 6 MES B 1 406 1 MES MES . L 5 GOL B 1 407 3 GOL GOL . M 7 HOH A 1 501 31 HOH HOH . M 7 HOH A 2 502 151 HOH HOH . M 7 HOH A 3 503 114 HOH HOH . M 7 HOH A 4 504 10 HOH HOH . M 7 HOH A 5 505 42 HOH HOH . M 7 HOH A 6 506 260 HOH HOH . M 7 HOH A 7 507 94 HOH HOH . M 7 HOH A 8 508 262 HOH HOH . M 7 HOH A 9 509 170 HOH HOH . M 7 HOH A 10 510 169 HOH HOH . M 7 HOH A 11 511 270 HOH HOH . M 7 HOH A 12 512 86 HOH HOH . M 7 HOH A 13 513 150 HOH HOH . M 7 HOH A 14 514 82 HOH HOH . M 7 HOH A 15 515 64 HOH HOH . M 7 HOH A 16 516 131 HOH HOH . M 7 HOH A 17 517 172 HOH HOH . M 7 HOH A 18 518 106 HOH HOH . M 7 HOH A 19 519 190 HOH HOH . M 7 HOH A 20 520 85 HOH HOH . M 7 HOH A 21 521 241 HOH HOH . M 7 HOH A 22 522 176 HOH HOH . M 7 HOH A 23 523 110 HOH HOH . M 7 HOH A 24 524 191 HOH HOH . M 7 HOH A 25 525 73 HOH HOH . M 7 HOH A 26 526 248 HOH HOH . M 7 HOH A 27 527 212 HOH HOH . M 7 HOH A 28 528 2 HOH HOH . M 7 HOH A 29 529 153 HOH HOH . M 7 HOH A 30 530 27 HOH HOH . M 7 HOH A 31 531 155 HOH HOH . M 7 HOH A 32 532 111 HOH HOH . M 7 HOH A 33 533 5 HOH HOH . M 7 HOH A 34 534 200 HOH HOH . M 7 HOH A 35 535 38 HOH HOH . M 7 HOH A 36 536 23 HOH HOH . M 7 HOH A 37 537 240 HOH HOH . M 7 HOH A 38 538 105 HOH HOH . M 7 HOH A 39 539 205 HOH HOH . M 7 HOH A 40 540 140 HOH HOH . M 7 HOH A 41 541 11 HOH HOH . M 7 HOH A 42 542 71 HOH HOH . M 7 HOH A 43 543 259 HOH HOH . M 7 HOH A 44 544 267 HOH HOH . M 7 HOH A 45 545 211 HOH HOH . M 7 HOH A 46 546 230 HOH HOH . M 7 HOH A 47 547 142 HOH HOH . M 7 HOH A 48 548 43 HOH HOH . M 7 HOH A 49 549 41 HOH HOH . M 7 HOH A 50 550 1 HOH HOH . M 7 HOH A 51 551 197 HOH HOH . M 7 HOH A 52 552 70 HOH HOH . M 7 HOH A 53 553 107 HOH HOH . M 7 HOH A 54 554 78 HOH HOH . M 7 HOH A 55 555 88 HOH HOH . M 7 HOH A 56 556 221 HOH HOH . M 7 HOH A 57 557 130 HOH HOH . M 7 HOH A 58 558 30 HOH HOH . M 7 HOH A 59 559 227 HOH HOH . M 7 HOH A 60 560 236 HOH HOH . M 7 HOH A 61 561 4 HOH HOH . M 7 HOH A 62 562 52 HOH HOH . M 7 HOH A 63 563 126 HOH HOH . M 7 HOH A 64 564 51 HOH HOH . M 7 HOH A 65 565 36 HOH HOH . M 7 HOH A 66 566 206 HOH HOH . M 7 HOH A 67 567 196 HOH HOH . M 7 HOH A 68 568 8 HOH HOH . M 7 HOH A 69 569 103 HOH HOH . M 7 HOH A 70 570 24 HOH HOH . M 7 HOH A 71 571 209 HOH HOH . M 7 HOH A 72 572 28 HOH HOH . M 7 HOH A 73 573 17 HOH HOH . M 7 HOH A 74 574 265 HOH HOH . M 7 HOH A 75 575 238 HOH HOH . M 7 HOH A 76 576 143 HOH HOH . M 7 HOH A 77 577 113 HOH HOH . M 7 HOH A 78 578 63 HOH HOH . M 7 HOH A 79 579 77 HOH HOH . M 7 HOH A 80 580 75 HOH HOH . M 7 HOH A 81 581 35 HOH HOH . M 7 HOH A 82 582 257 HOH HOH . M 7 HOH A 83 583 12 HOH HOH . M 7 HOH A 84 584 148 HOH HOH . M 7 HOH A 85 585 177 HOH HOH . M 7 HOH A 86 586 56 HOH HOH . M 7 HOH A 87 587 55 HOH HOH . M 7 HOH A 88 588 9 HOH HOH . M 7 HOH A 89 589 146 HOH HOH . M 7 HOH A 90 590 137 HOH HOH . M 7 HOH A 91 591 165 HOH HOH . M 7 HOH A 92 592 232 HOH HOH . M 7 HOH A 93 593 204 HOH HOH . M 7 HOH A 94 594 193 HOH HOH . M 7 HOH A 95 595 154 HOH HOH . M 7 HOH A 96 596 264 HOH HOH . M 7 HOH A 97 597 225 HOH HOH . M 7 HOH A 98 598 229 HOH HOH . M 7 HOH A 99 599 231 HOH HOH . M 7 HOH A 100 600 207 HOH HOH . M 7 HOH A 101 601 180 HOH HOH . M 7 HOH A 102 602 255 HOH HOH . M 7 HOH A 103 603 256 HOH HOH . M 7 HOH A 104 604 175 HOH HOH . M 7 HOH A 105 605 201 HOH HOH . M 7 HOH A 106 606 162 HOH HOH . M 7 HOH A 107 607 237 HOH HOH . M 7 HOH A 108 608 141 HOH HOH . M 7 HOH A 109 609 112 HOH HOH . M 7 HOH A 110 610 242 HOH HOH . M 7 HOH A 111 611 139 HOH HOH . M 7 HOH A 112 612 171 HOH HOH . M 7 HOH A 113 613 254 HOH HOH . M 7 HOH A 114 614 208 HOH HOH . M 7 HOH A 115 615 219 HOH HOH . M 7 HOH A 116 616 243 HOH HOH . M 7 HOH A 117 617 272 HOH HOH . N 7 HOH B 1 501 178 HOH HOH . N 7 HOH B 2 502 251 HOH HOH . N 7 HOH B 3 503 48 HOH HOH . N 7 HOH B 4 504 268 HOH HOH . N 7 HOH B 5 505 67 HOH HOH . N 7 HOH B 6 506 173 HOH HOH . N 7 HOH B 7 507 182 HOH HOH . N 7 HOH B 8 508 79 HOH HOH . N 7 HOH B 9 509 136 HOH HOH . N 7 HOH B 10 510 252 HOH HOH . N 7 HOH B 11 511 7 HOH HOH . N 7 HOH B 12 512 127 HOH HOH . N 7 HOH B 13 513 14 HOH HOH . N 7 HOH B 14 514 66 HOH HOH . N 7 HOH B 15 515 3 HOH HOH . N 7 HOH B 16 516 74 HOH HOH . N 7 HOH B 17 517 62 HOH HOH . N 7 HOH B 18 518 181 HOH HOH . N 7 HOH B 19 519 76 HOH HOH . N 7 HOH B 20 520 57 HOH HOH . N 7 HOH B 21 521 160 HOH HOH . N 7 HOH B 22 522 81 HOH HOH . N 7 HOH B 23 523 192 HOH HOH . N 7 HOH B 24 524 202 HOH HOH . N 7 HOH B 25 525 122 HOH HOH . N 7 HOH B 26 526 217 HOH HOH . N 7 HOH B 27 527 158 HOH HOH . N 7 HOH B 28 528 119 HOH HOH . N 7 HOH B 29 529 199 HOH HOH . N 7 HOH B 30 530 117 HOH HOH . N 7 HOH B 31 531 203 HOH HOH . N 7 HOH B 32 532 96 HOH HOH . N 7 HOH B 33 533 214 HOH HOH . N 7 HOH B 34 534 95 HOH HOH . N 7 HOH B 35 535 125 HOH HOH . N 7 HOH B 36 536 93 HOH HOH . N 7 HOH B 37 537 102 HOH HOH . N 7 HOH B 38 538 26 HOH HOH . N 7 HOH B 39 539 220 HOH HOH . N 7 HOH B 40 540 49 HOH HOH . N 7 HOH B 41 541 213 HOH HOH . N 7 HOH B 42 542 87 HOH HOH . N 7 HOH B 43 543 97 HOH HOH . N 7 HOH B 44 544 149 HOH HOH . N 7 HOH B 45 545 54 HOH HOH . N 7 HOH B 46 546 104 HOH HOH . N 7 HOH B 47 547 83 HOH HOH . N 7 HOH B 48 548 50 HOH HOH . N 7 HOH B 49 549 129 HOH HOH . N 7 HOH B 50 550 147 HOH HOH . N 7 HOH B 51 551 144 HOH HOH . N 7 HOH B 52 552 99 HOH HOH . N 7 HOH B 53 553 90 HOH HOH . N 7 HOH B 54 554 45 HOH HOH . N 7 HOH B 55 555 46 HOH HOH . N 7 HOH B 56 556 13 HOH HOH . N 7 HOH B 57 557 123 HOH HOH . N 7 HOH B 58 558 247 HOH HOH . N 7 HOH B 59 559 249 HOH HOH . N 7 HOH B 60 560 269 HOH HOH . N 7 HOH B 61 561 216 HOH HOH . N 7 HOH B 62 562 69 HOH HOH . N 7 HOH B 63 563 84 HOH HOH . N 7 HOH B 64 564 245 HOH HOH . N 7 HOH B 65 565 29 HOH HOH . N 7 HOH B 66 566 21 HOH HOH . N 7 HOH B 67 567 157 HOH HOH . N 7 HOH B 68 568 98 HOH HOH . N 7 HOH B 69 569 198 HOH HOH . N 7 HOH B 70 570 39 HOH HOH . N 7 HOH B 71 571 22 HOH HOH . N 7 HOH B 72 572 18 HOH HOH . N 7 HOH B 73 573 115 HOH HOH . N 7 HOH B 74 574 135 HOH HOH . N 7 HOH B 75 575 58 HOH HOH . N 7 HOH B 76 576 138 HOH HOH . N 7 HOH B 77 577 215 HOH HOH . N 7 HOH B 78 578 159 HOH HOH . N 7 HOH B 79 579 168 HOH HOH . N 7 HOH B 80 580 61 HOH HOH . N 7 HOH B 81 581 186 HOH HOH . N 7 HOH B 82 582 6 HOH HOH . N 7 HOH B 83 583 37 HOH HOH . N 7 HOH B 84 584 100 HOH HOH . N 7 HOH B 85 585 65 HOH HOH . N 7 HOH B 86 586 59 HOH HOH . N 7 HOH B 87 587 250 HOH HOH . N 7 HOH B 88 588 266 HOH HOH . N 7 HOH B 89 589 53 HOH HOH . N 7 HOH B 90 590 156 HOH HOH . N 7 HOH B 91 591 228 HOH HOH . N 7 HOH B 92 592 44 HOH HOH . N 7 HOH B 93 593 20 HOH HOH . N 7 HOH B 94 594 101 HOH HOH . N 7 HOH B 95 595 92 HOH HOH . N 7 HOH B 96 596 34 HOH HOH . N 7 HOH B 97 597 195 HOH HOH . N 7 HOH B 98 598 15 HOH HOH . N 7 HOH B 99 599 132 HOH HOH . N 7 HOH B 100 600 271 HOH HOH . N 7 HOH B 101 601 19 HOH HOH . N 7 HOH B 102 602 72 HOH HOH . N 7 HOH B 103 603 33 HOH HOH . N 7 HOH B 104 604 47 HOH HOH . N 7 HOH B 105 605 124 HOH HOH . N 7 HOH B 106 606 32 HOH HOH . N 7 HOH B 107 607 25 HOH HOH . N 7 HOH B 108 608 68 HOH HOH . N 7 HOH B 109 609 263 HOH HOH . N 7 HOH B 110 610 235 HOH HOH . N 7 HOH B 111 611 16 HOH HOH . N 7 HOH B 112 612 233 HOH HOH . N 7 HOH B 113 613 253 HOH HOH . N 7 HOH B 114 614 121 HOH HOH . N 7 HOH B 115 615 152 HOH HOH . N 7 HOH B 116 616 128 HOH HOH . N 7 HOH B 117 617 234 HOH HOH . N 7 HOH B 118 618 60 HOH HOH . N 7 HOH B 119 619 80 HOH HOH . N 7 HOH B 120 620 194 HOH HOH . N 7 HOH B 121 621 109 HOH HOH . N 7 HOH B 122 622 116 HOH HOH . N 7 HOH B 123 623 226 HOH HOH . N 7 HOH B 124 624 183 HOH HOH . N 7 HOH B 125 625 184 HOH HOH . N 7 HOH B 126 626 91 HOH HOH . N 7 HOH B 127 627 164 HOH HOH . N 7 HOH B 128 628 120 HOH HOH . N 7 HOH B 129 629 163 HOH HOH . N 7 HOH B 130 630 188 HOH HOH . N 7 HOH B 131 631 133 HOH HOH . N 7 HOH B 132 632 258 HOH HOH . N 7 HOH B 133 633 185 HOH HOH . N 7 HOH B 134 634 246 HOH HOH . N 7 HOH B 135 635 273 HOH HOH . N 7 HOH B 136 636 40 HOH HOH . N 7 HOH B 137 637 224 HOH HOH . N 7 HOH B 138 638 134 HOH HOH . N 7 HOH B 139 639 161 HOH HOH . N 7 HOH B 140 640 223 HOH HOH . N 7 HOH B 141 641 239 HOH HOH . N 7 HOH B 142 642 222 HOH HOH . N 7 HOH B 143 643 145 HOH HOH . N 7 HOH B 144 644 179 HOH HOH . N 7 HOH B 145 645 210 HOH HOH . N 7 HOH B 146 646 187 HOH HOH . N 7 HOH B 147 647 244 HOH HOH . N 7 HOH B 148 648 108 HOH HOH . N 7 HOH B 149 649 174 HOH HOH . N 7 HOH B 150 650 189 HOH HOH . N 7 HOH B 151 651 166 HOH HOH . N 7 HOH B 152 652 118 HOH HOH . N 7 HOH B 153 653 261 HOH HOH . N 7 HOH B 154 654 218 HOH HOH . N 7 HOH B 155 655 89 HOH HOH . N 7 HOH B 156 656 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 5 49.846 -76.932 -20.612 1 88.42 0 C1 GOL 407 B 1 HETATM 2 O O1 GOL . . . L 5 48.613 -77.484 -21.07 1 66.75 0 O1 GOL 407 B 1 HETATM 3 C C2 GOL . . . L 5 49.697 -76.273 -19.255 1 89.7 0 C2 GOL 407 B 1 HETATM 4 O O2 GOL . . . L 5 49.648 -77.265 -18.227 1 79.05 0 O2 GOL 407 B 1 HETATM 5 C C3 GOL . . . L 5 50.796 -75.275 -18.951 1 79.28 0 C3 GOL 407 B 1 HETATM 6 O O3 GOL . . . L 5 50.456 -74.444 -17.845 1 68.95 0 O3 GOL 407 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #