data_8H51 # _model_server_result.job_id EewHa8SGz5-n1mJ4IVsnwg _model_server_result.datetime_utc '2024-10-15 18:31:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h51 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8H51 # _exptl.entry_id 8H51 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 501.542 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8H51 _cell.length_a 45.566 _cell.length_b 63.394 _cell.length_c 106.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H51 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 63.394 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id 4WI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 4WI _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.767 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H34 F3 N5 O4' _chem_comp.formula_weight 501.542 _chem_comp.id 4WI _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PF-07321332, bound form;nirmatrelvir, bound form;Paxlovid, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C8 4WI doub 1 n n C8 N2 4WI sing 2 n n C8 C5 4WI sing 3 n n N2 C7 4WI sing 4 n n C4 C5 4WI sing 5 n n C4 C2 4WI sing 6 n n C5 C6 4WI sing 7 n n N5 C3 4WI doub 8 n n C3 C2 4WI sing 9 n n C7 C6 4WI sing 10 n n C2 N1 4WI sing 11 n n N1 C1 4WI sing 12 n n F1 C22 4WI sing 13 n n O3 C13 4WI doub 14 n n C1 C9 4WI sing 15 n n C1 O2 4WI doub 16 n n F3 C22 4WI sing 17 n n C23 C15 4WI sing 18 n n C22 F2 4WI sing 19 n n C22 C21 4WI sing 20 n n C9 N3 4WI sing 21 n n C9 C12 4WI sing 22 n n C13 N3 4WI sing 23 n n C13 C14 4WI sing 24 n n N4 C21 4WI sing 25 n n N4 C14 4WI sing 26 n n C19 C18 4WI sing 27 n n N3 C10 4WI sing 28 n n C21 O4 4WI doub 29 n n C12 C18 4WI sing 30 n n C12 C11 4WI sing 31 n n C14 C15 4WI sing 32 n n C15 C17 4WI sing 33 n n C15 C16 4WI sing 34 n n C18 C20 4WI sing 35 n n C18 C11 4WI sing 36 n n C10 C11 4WI sing 37 n n C3 H33 4WI sing 38 n n C6 H5 4WI sing 39 n n C6 H6 4WI sing 40 n n C7 H7 4WI sing 41 n n C7 H8 4WI sing 42 n n C10 H11 4WI sing 43 n n C10 H12 4WI sing 44 n n C5 H4 4WI sing 45 n n C9 H10 4WI sing 46 n n C11 H13 4WI sing 47 n n C12 H14 4WI sing 48 n n C19 H23 4WI sing 49 n n C19 H24 4WI sing 50 n n C19 H25 4WI sing 51 n n C20 H26 4WI sing 52 n n C20 H27 4WI sing 53 n n C20 H28 4WI sing 54 n n C16 H17 4WI sing 55 n n C16 H19 4WI sing 56 n n C16 H18 4WI sing 57 n n C17 H20 4WI sing 58 n n C17 H21 4WI sing 59 n n C17 H22 4WI sing 60 n n C23 H29 4WI sing 61 n n C23 H30 4WI sing 62 n n C23 H31 4WI sing 63 n n C4 H2 4WI sing 64 n n C4 H3 4WI sing 65 n n C2 H32 4WI sing 66 n n C14 H15 4WI sing 67 n n N5 H36 4WI sing 68 n n N2 H9 4WI sing 69 n n N1 H1 4WI sing 70 n n N4 H16 4WI sing 71 n n # _atom_sites.entry_id 8H51 _atom_sites.fract_transf_matrix[1][1] 0.021946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4WI A 1 401 401 4WI 4WI . C 3 HOH A 1 501 25 HOH HOH . C 3 HOH A 2 502 106 HOH HOH . C 3 HOH A 3 503 51 HOH HOH . C 3 HOH A 4 504 5 HOH HOH . C 3 HOH A 5 505 83 HOH HOH . C 3 HOH A 6 506 39 HOH HOH . C 3 HOH A 7 507 28 HOH HOH . C 3 HOH A 8 508 14 HOH HOH . C 3 HOH A 9 509 12 HOH HOH . C 3 HOH A 10 510 15 HOH HOH . C 3 HOH A 11 511 115 HOH HOH . C 3 HOH A 12 512 34 HOH HOH . C 3 HOH A 13 513 113 HOH HOH . C 3 HOH A 14 514 67 HOH HOH . C 3 HOH A 15 515 90 HOH HOH . C 3 HOH A 16 516 63 HOH HOH . C 3 HOH A 17 517 74 HOH HOH . C 3 HOH A 18 518 21 HOH HOH . C 3 HOH A 19 519 24 HOH HOH . C 3 HOH A 20 520 31 HOH HOH . C 3 HOH A 21 521 48 HOH HOH . C 3 HOH A 22 522 13 HOH HOH . C 3 HOH A 23 523 6 HOH HOH . C 3 HOH A 24 524 66 HOH HOH . C 3 HOH A 25 525 36 HOH HOH . C 3 HOH A 26 526 20 HOH HOH . C 3 HOH A 27 527 23 HOH HOH . C 3 HOH A 28 528 1 HOH HOH . C 3 HOH A 29 529 44 HOH HOH . C 3 HOH A 30 530 2 HOH HOH . C 3 HOH A 31 531 46 HOH HOH . C 3 HOH A 32 532 26 HOH HOH . C 3 HOH A 33 533 18 HOH HOH . C 3 HOH A 34 534 19 HOH HOH . C 3 HOH A 35 535 50 HOH HOH . C 3 HOH A 36 536 32 HOH HOH . C 3 HOH A 37 537 80 HOH HOH . C 3 HOH A 38 538 30 HOH HOH . C 3 HOH A 39 539 4 HOH HOH . C 3 HOH A 40 540 65 HOH HOH . C 3 HOH A 41 541 62 HOH HOH . C 3 HOH A 42 542 40 HOH HOH . C 3 HOH A 43 543 7 HOH HOH . C 3 HOH A 44 544 10 HOH HOH . C 3 HOH A 45 545 91 HOH HOH . C 3 HOH A 46 546 79 HOH HOH . C 3 HOH A 47 547 84 HOH HOH . C 3 HOH A 48 548 29 HOH HOH . C 3 HOH A 49 549 42 HOH HOH . C 3 HOH A 50 550 73 HOH HOH . C 3 HOH A 51 551 116 HOH HOH . C 3 HOH A 52 552 33 HOH HOH . C 3 HOH A 53 553 76 HOH HOH . C 3 HOH A 54 554 71 HOH HOH . C 3 HOH A 55 555 57 HOH HOH . C 3 HOH A 56 556 118 HOH HOH . C 3 HOH A 57 557 99 HOH HOH . C 3 HOH A 58 558 41 HOH HOH . C 3 HOH A 59 559 77 HOH HOH . C 3 HOH A 60 560 107 HOH HOH . C 3 HOH A 61 561 11 HOH HOH . C 3 HOH A 62 562 35 HOH HOH . C 3 HOH A 63 563 59 HOH HOH . C 3 HOH A 64 564 27 HOH HOH . C 3 HOH A 65 565 3 HOH HOH . C 3 HOH A 66 566 72 HOH HOH . C 3 HOH A 67 567 37 HOH HOH . C 3 HOH A 68 568 16 HOH HOH . C 3 HOH A 69 569 70 HOH HOH . C 3 HOH A 70 570 58 HOH HOH . C 3 HOH A 71 571 119 HOH HOH . C 3 HOH A 72 572 105 HOH HOH . C 3 HOH A 73 573 49 HOH HOH . C 3 HOH A 74 574 89 HOH HOH . C 3 HOH A 75 575 52 HOH HOH . C 3 HOH A 76 576 100 HOH HOH . C 3 HOH A 77 577 111 HOH HOH . C 3 HOH A 78 578 110 HOH HOH . C 3 HOH A 79 579 47 HOH HOH . C 3 HOH A 80 580 75 HOH HOH . C 3 HOH A 81 581 97 HOH HOH . C 3 HOH A 82 582 54 HOH HOH . C 3 HOH A 83 583 17 HOH HOH . C 3 HOH A 84 584 96 HOH HOH . C 3 HOH A 85 585 60 HOH HOH . C 3 HOH A 86 586 82 HOH HOH . C 3 HOH A 87 587 69 HOH HOH . C 3 HOH A 88 588 87 HOH HOH . C 3 HOH A 89 589 8 HOH HOH . C 3 HOH A 90 590 95 HOH HOH . C 3 HOH A 91 591 112 HOH HOH . C 3 HOH A 92 592 9 HOH HOH . C 3 HOH A 93 593 94 HOH HOH . C 3 HOH A 94 594 22 HOH HOH . C 3 HOH A 95 595 53 HOH HOH . C 3 HOH A 96 596 103 HOH HOH . C 3 HOH A 97 597 92 HOH HOH . C 3 HOH A 98 598 43 HOH HOH . C 3 HOH A 99 599 61 HOH HOH . C 3 HOH A 100 600 93 HOH HOH . C 3 HOH A 101 601 45 HOH HOH . C 3 HOH A 102 602 85 HOH HOH . C 3 HOH A 103 603 104 HOH HOH . C 3 HOH A 104 604 38 HOH HOH . C 3 HOH A 105 605 64 HOH HOH . C 3 HOH A 106 606 108 HOH HOH . C 3 HOH A 107 607 114 HOH HOH . C 3 HOH A 108 608 56 HOH HOH . C 3 HOH A 109 609 101 HOH HOH . C 3 HOH A 110 610 117 HOH HOH . C 3 HOH A 111 611 68 HOH HOH . C 3 HOH A 112 612 88 HOH HOH . C 3 HOH A 113 613 98 HOH HOH . C 3 HOH A 114 614 81 HOH HOH . C 3 HOH A 115 615 86 HOH HOH . C 3 HOH A 116 616 102 HOH HOH . C 3 HOH A 117 617 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 4WI . . . B 2 -16.244 21.484 -25.046 1 34.93 ? C8 4WI 401 A 1 HETATM 2 C C3 4WI . . . B 2 -17.126 19.931 -29.836 1 27.37 ? C3 4WI 401 A 1 HETATM 3 C C1 4WI . . . B 2 -18.885 17.972 -27.281 1 34.08 ? C1 4WI 401 A 1 HETATM 4 C C13 4WI . . . B 2 -19.213 16.817 -24.316 1 31.94 ? C13 4WI 401 A 1 HETATM 5 C C21 4WI . . . B 2 -19.593 14.647 -21.588 1 33.87 ? C21 4WI 401 A 1 HETATM 6 C C6 4WI . . . B 2 -18.479 21.569 -25.981 1 30.52 ? C6 4WI 401 A 1 HETATM 7 C C7 4WI . . . B 2 -18.328 22.534 -24.719 1 31.25 ? C7 4WI 401 A 1 HETATM 8 C C10 4WI . . . B 2 -20.889 15.55 -26.09 1 35.43 ? C10 4WI 401 A 1 HETATM 9 C C5 4WI . . . B 2 -17.323 20.81 -26.04 1 32.92 ? C5 4WI 401 A 1 HETATM 10 C C9 4WI . . . B 2 -18.782 16.536 -26.762 1 37.01 ? C9 4WI 401 A 1 HETATM 11 C C11 4WI . . . B 2 -20.602 14.874 -27.299 1 32.53 ? C11 4WI 401 A 1 HETATM 12 C C12 4WI . . . B 2 -19.207 15.353 -27.762 1 34.13 ? C12 4WI 401 A 1 HETATM 13 C C18 4WI . . . B 2 -19.535 13.848 -27.728 1 35.84 ? C18 4WI 401 A 1 HETATM 14 C C19 4WI . . . B 2 -18.846 13.109 -26.557 1 28.67 ? C19 4WI 401 A 1 HETATM 15 C C20 4WI . . . B 2 -19.781 13.129 -29.071 1 27.1 ? C20 4WI 401 A 1 HETATM 16 C C16 4WI . . . B 2 -21.935 18.175 -23.859 1 26.74 ? C16 4WI 401 A 1 HETATM 17 C C17 4WI . . . B 2 -21.872 17.328 -21.481 1 31.44 ? C17 4WI 401 A 1 HETATM 18 C C23 4WI . . . B 2 -20.089 18.915 -22.299 1 29.04 ? C23 4WI 401 A 1 HETATM 19 C C4 4WI . . . B 2 -16.766 20.785 -27.502 1 32.53 ? C4 4WI 401 A 1 HETATM 20 C C2 4WI . . . B 2 -17.671 19.931 -28.415 1 32.06 ? C2 4WI 401 A 1 HETATM 21 C C14 4WI . . . B 2 -20.165 16.509 -23.164 1 30.81 ? C14 4WI 401 A 1 HETATM 22 C C22 4WI . . . B 2 -18.681 14.071 -20.49 1 41.01 ? C22 4WI 401 A 1 HETATM 23 C C15 4WI . . . B 2 -21.004 17.733 -22.705 1 31.42 ? C15 4WI 401 A 1 HETATM 24 N N5 4WI . . . B 2 -17.569 20.752 -30.679 1 26.95 ? N5 4WI 401 A 1 HETATM 25 N N2 4WI . . . B 2 -16.842 22.453 -24.314 1 31.06 ? N2 4WI 401 A 1 HETATM 26 N N3 4WI . . . B 2 -19.565 16.348 -25.685 1 34.28 ? N3 4WI 401 A 1 HETATM 27 N N1 4WI . . . B 2 -17.67 18.563 -27.916 1 29.35 ? N1 4WI 401 A 1 HETATM 28 N N4 4WI . . . B 2 -19.321 15.984 -22.115 1 28.18 ? N4 4WI 401 A 1 HETATM 29 O O1 4WI . . . B 2 -15.098 21.176 -24.963 1 33.82 ? O1 4WI 401 A 1 HETATM 30 O O2 4WI . . . B 2 -19.88 18.61 -27.145 1 29.34 ? O2 4WI 401 A 1 HETATM 31 O O3 4WI . . . B 2 -18.177 17.384 -24.155 1 34.29 ? O3 4WI 401 A 1 HETATM 32 O O4 4WI . . . B 2 -20.505 14.02 -22.009 1 39.89 ? O4 4WI 401 A 1 HETATM 33 F F1 4WI . . . B 2 -19.325 14.053 -19.284 1 46.05 ? F1 4WI 401 A 1 HETATM 34 F F2 4WI . . . B 2 -17.557 14.843 -20.405 1 50.65 ? F2 4WI 401 A 1 HETATM 35 F F3 4WI . . . B 2 -18.323 12.8 -20.842 1 44.67 ? F3 4WI 401 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #