data_8H65 # _model_server_result.job_id rWwrPeafi6jMcufJEs6tpA _model_server_result.datetime_utc '2024-11-18 05:56:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":701}' # _entry.id 8H65 # _exptl.entry_id 8H65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 837.624 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Butyryl Coenzyme A' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8H65 _cell.length_a 175.695 _cell.length_b 175.695 _cell.length_c 175.695 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C25 H42 N7 O17 P3 S' _chem_comp.formula_weight 837.624 _chem_comp.id BCO _chem_comp.mon_nstd_flag . _chem_comp.name 'Butyryl Coenzyme A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'S-{(3S,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} butanethioate (non-preferred name)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 N4 BCO doub 70 n y C15 N3 BCO sing 71 n y N4 C12 BCO sing 72 n y N3 C6 BCO doub 73 n y O9 P1 BCO doub 74 n n C12 N5 BCO sing 75 n n C12 C8 BCO doub 76 n y O3 C2 BCO sing 77 n n C6 C8 BCO sing 78 n y C6 N1 BCO sing 79 n y C2 C4 BCO sing 80 n n C2 C1 BCO sing 81 n n C8 N2 BCO sing 82 n y P1 O6 BCO sing 83 n n P1 O5 BCO sing 84 n n P1 O2 BCO sing 85 n n C4 N1 BCO sing 86 n n C4 O1 BCO sing 87 n n N1 C7 BCO sing 88 n y O2 C1 BCO sing 89 n n C1 C3 BCO sing 90 n n N2 C7 BCO doub 91 n y O1 C3 BCO sing 92 n n C3 C5 BCO sing 93 n n C5 O4 BCO sing 94 n n O4 P2 BCO sing 95 n n O10 P2 BCO doub 96 n n P2 O7 BCO sing 97 n n P2 O12 BCO sing 98 n n O7 P3 BCO sing 99 n n P3 O13 BCO doub 100 n n P3 O14 BCO sing 101 n n P3 O8 BCO sing 102 n n O8 C11 BCO sing 103 n n C14 C9 BCO sing 104 n n C11 C9 BCO sing 105 n n C9 C13 BCO sing 106 n n C9 C10 BCO sing 107 n n C10 O11 BCO sing 108 n n C10 C16 BCO sing 109 n n C16 O15 BCO doub 110 n n C16 N6 BCO sing 111 n n N6 C17 BCO sing 112 n n C17 C18 BCO sing 113 n n C18 C19 BCO sing 114 n n C19 O16 BCO doub 115 n n C19 N7 BCO sing 116 n n N7 C20 BCO sing 117 n n C20 C21 BCO sing 118 n n C21 S1 BCO sing 119 n n S1 C22 BCO sing 120 n n C22 O17 BCO doub 121 n n C22 C23 BCO sing 122 n n C23 C24 BCO sing 123 n n C24 C25 BCO sing 124 n n O5 H1 BCO sing 125 n n O6 H2 BCO sing 126 n n C1 H3 BCO sing 127 n n C2 H4 BCO sing 128 n n O3 H5 BCO sing 129 n n C4 H6 BCO sing 130 n n C7 H7 BCO sing 131 n n C15 H8 BCO sing 132 n n N5 H9 BCO sing 133 n n N5 H10 BCO sing 134 n n C3 H11 BCO sing 135 n n C5 H12 BCO sing 136 n n C5 H13 BCO sing 137 n n O12 H14 BCO sing 138 n n O14 H15 BCO sing 139 n n C11 H16 BCO sing 140 n n C11 H17 BCO sing 141 n n C13 H18 BCO sing 142 n n C13 H19 BCO sing 143 n n C13 H20 BCO sing 144 n n C14 H21 BCO sing 145 n n C14 H22 BCO sing 146 n n C14 H23 BCO sing 147 n n C10 H24 BCO sing 148 n n O11 H25 BCO sing 149 n n N6 H26 BCO sing 150 n n C17 H27 BCO sing 151 n n C18 H28 BCO sing 152 n n N7 H29 BCO sing 153 n n C20 H30 BCO sing 154 n n C20 H31 BCO sing 155 n n C21 H32 BCO sing 156 n n C21 H33 BCO sing 157 n n C23 H34 BCO sing 158 n n C24 H35 BCO sing 159 n n C25 H36 BCO sing 160 n n C25 H37 BCO sing 161 n n C25 H38 BCO sing 162 n n C17 H39 BCO sing 163 n n C18 H40 BCO sing 164 n n C23 H41 BCO sing 165 n n C24 H42 BCO sing 166 n n # _atom_sites.entry_id 8H65 _atom_sites.fract_transf_matrix[1][1] 0.005692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 BCO C 1 701 1 BCO BCO . J 2 BCO D 1 701 1 BCO BCO . K 2 BCO E 1 701 1 BCO BCO . L 2 BCO F 1 701 1 BCO BCO . M 2 BCO B 1 701 1 BCO BCO . N 2 BCO A 1 701 1 BCO BCO . O 2 BCO G 1 701 1 BCO BCO . P 2 BCO H 1 701 1 BCO BCO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O9 BCO . . . K 2 -37.156 54.304 23.917 1 119.92 ? O9 BCO 701 E 1 HETATM 2 P P1 BCO . . . K 2 -36.503 53.456 22.84 1 131.63 ? P1 BCO 701 E 1 HETATM 3 O O5 BCO . . . K 2 -35.019 53.772 22.775 1 103.01 ? O5 BCO 701 E 1 HETATM 4 O O6 BCO . . . K 2 -36.714 51.986 23.181 1 111.28 ? O6 BCO 701 E 1 HETATM 5 O O2 BCO . . . K 2 -37.174 53.79 21.422 1 105.41 ? O2 BCO 701 E 1 HETATM 6 C C1 BCO . . . K 2 -37.088 52.862 20.276 1 88.47 ? C1 BCO 701 E 1 HETATM 7 C C2 BCO . . . K 2 -37.771 53.569 19.114 1 88.14 ? C2 BCO 701 E 1 HETATM 8 O O3 BCO . . . K 2 -38.59 54.627 19.632 1 88.61 ? O3 BCO 701 E 1 HETATM 9 C C4 BCO . . . K 2 -36.552 54.172 18.396 1 88.81 ? C4 BCO 701 E 1 HETATM 10 N N1 BCO . . . K 2 -36.684 54.478 17.067 1 84.63 ? N1 BCO 701 E 1 HETATM 11 C C7 BCO . . . K 2 -36.561 55.624 16.354 1 76.11 ? C7 BCO 701 E 1 HETATM 12 N N2 BCO . . . K 2 -36.752 55.431 15.028 1 61.53 ? N2 BCO 701 E 1 HETATM 13 C C8 BCO . . . K 2 -36.992 54.126 14.873 1 65.78 ? C8 BCO 701 E 1 HETATM 14 C C6 BCO . . . K 2 -36.947 53.514 16.136 1 73.9 ? C6 BCO 701 E 1 HETATM 15 N N3 BCO . . . K 2 -37.16 52.188 16.246 1 70.16 ? N3 BCO 701 E 1 HETATM 16 C C15 BCO . . . K 2 -37.412 51.522 15.136 1 72.55 ? C15 BCO 701 E 1 HETATM 17 N N4 BCO . . . K 2 -37.46 52.067 13.891 1 75.65 ? N4 BCO 701 E 1 HETATM 18 C C12 BCO . . . K 2 -37.248 53.365 13.751 1 69.71 ? C12 BCO 701 E 1 HETATM 19 N N5 BCO . . . K 2 -37.275 53.935 12.537 1 68.97 ? N5 BCO 701 E 1 HETATM 20 O O1 BCO . . . K 2 -35.446 53.292 18.565 1 83.1 ? O1 BCO 701 E 1 HETATM 21 C C3 BCO . . . K 2 -35.638 52.616 19.83 1 86.21 ? C3 BCO 701 E 1 HETATM 22 C C5 BCO . . . K 2 -35.196 51.18 19.674 1 71.86 ? C5 BCO 701 E 1 HETATM 23 O O4 BCO . . . K 2 -36.35 50.35 19.829 1 72.08 ? O4 BCO 701 E 1 HETATM 24 P P2 BCO . . . K 2 -36.207 48.808 19.542 1 55.87 ? P2 BCO 701 E 1 HETATM 25 O O12 BCO . . . K 2 -34.855 48.302 19.994 1 41.58 ? O12 BCO 701 E 1 HETATM 26 O O10 BCO . . . K 2 -37.325 48.079 20.219 1 56.06 ? O10 BCO 701 E 1 HETATM 27 O O7 BCO . . . K 2 -36.437 48.663 17.929 1 56.88 ? O7 BCO 701 E 1 HETATM 28 P P3 BCO . . . K 2 -36.664 47.309 17.001 1 51.46 ? P3 BCO 701 E 1 HETATM 29 O O14 BCO . . . K 2 -36.476 46.087 17.854 1 48.44 ? O14 BCO 701 E 1 HETATM 30 O O13 BCO . . . K 2 -38.06 47.386 16.408 1 55.21 ? O13 BCO 701 E 1 HETATM 31 O O8 BCO . . . K 2 -35.566 47.402 15.777 1 53.57 ? O8 BCO 701 E 1 HETATM 32 C C11 BCO . . . K 2 -35.513 48.619 15.04 1 44.99 ? C11 BCO 701 E 1 HETATM 33 C C9 BCO . . . K 2 -35.645 48.254 13.552 1 47.63 ? C9 BCO 701 E 1 HETATM 34 C C13 BCO . . . K 2 -35.542 49.531 12.664 1 49.73 ? C13 BCO 701 E 1 HETATM 35 C C14 BCO . . . K 2 -34.565 47.25 13.217 1 48.28 ? C14 BCO 701 E 1 HETATM 36 C C10 BCO . . . K 2 -37.022 47.594 13.317 1 50.22 ? C10 BCO 701 E 1 HETATM 37 O O11 BCO . . . K 2 -37.966 48.577 13.674 1 55.43 ? O11 BCO 701 E 1 HETATM 38 C C16 BCO . . . K 2 -37.182 47.197 11.821 1 48.02 ? C16 BCO 701 E 1 HETATM 39 O O15 BCO . . . K 2 -36.819 46.098 11.451 1 51.56 ? O15 BCO 701 E 1 HETATM 40 N N6 BCO . . . K 2 -37.701 48.043 10.935 1 44.57 ? N6 BCO 701 E 1 HETATM 41 C C17 BCO . . . K 2 -37.851 47.699 9.485 1 44.82 ? C17 BCO 701 E 1 HETATM 42 C C18 BCO . . . K 2 -36.522 47.593 8.763 1 45.98 ? C18 BCO 701 E 1 HETATM 43 C C19 BCO . . . K 2 -35.553 48.747 8.954 1 50.71 ? C19 BCO 701 E 1 HETATM 44 O O16 BCO . . . K 2 -35.886 49.869 9.27 1 55.46 ? O16 BCO 701 E 1 HETATM 45 N N7 BCO . . . K 2 -34.278 48.521 8.751 1 48.99 ? N7 BCO 701 E 1 HETATM 46 C C20 BCO . . . K 2 -33.288 49.608 8.898 1 47.77 ? C20 BCO 701 E 1 HETATM 47 C C21 BCO . . . K 2 -32.724 49.973 7.492 1 52.97 ? C21 BCO 701 E 1 HETATM 48 S S1 BCO . . . K 2 -31.444 48.699 7.01 1 73.25 ? S1 BCO 701 E 1 HETATM 49 C C22 BCO . . . K 2 -30.018 49.73 7.031 1 59.91 ? C22 BCO 701 E 1 HETATM 50 O O17 BCO . . . K 2 -30.097 50.892 7.276 1 60.53 ? O17 BCO 701 E 1 HETATM 51 C C23 BCO . . . K 2 -28.746 49.006 6.697 1 44.37 ? C23 BCO 701 E 1 HETATM 52 C C24 BCO . . . K 2 -28.178 49.631 5.452 1 51.82 ? C24 BCO 701 E 1 HETATM 53 C C25 BCO . . . K 2 -29.184 49.696 4.304 1 44.27 ? C25 BCO 701 E 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #