data_8H6D # _model_server_result.job_id R5An_XDke1oAvRzOA0mCeA _model_server_result.datetime_utc '2024-11-13 18:08:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":701}' # _entry.id 8H6D # _exptl.entry_id 8H6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 881.633 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'glutaryl-coenzyme A' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8H6D _cell.length_a 175.265 _cell.length_b 175.265 _cell.length_c 175.265 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C26 H42 N7 O19 P3 S' _chem_comp.formula_weight 881.633 _chem_comp.id GRA _chem_comp.mon_nstd_flag . _chem_comp.name 'glutaryl-coenzyme A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9A P3X GRA sing 129 n n P3X O7A GRA sing 130 n n P3X O8A GRA doub 131 n n P3X O3X GRA sing 132 n n O3X C3X GRA sing 133 n n C3X C2X GRA sing 134 n n C3X C4X GRA sing 135 n n C2X O2X GRA sing 136 n n C2X C1X GRA sing 137 n n C4X O4X GRA sing 138 n n C4X C5X GRA sing 139 n n O4X C1X GRA sing 140 n n C1X N9A GRA sing 141 n n N9A C4A GRA sing 142 n y N9A C8A GRA sing 143 n y C4A N3A GRA doub 144 n y C4A C5A GRA sing 145 n y N3A C2A GRA sing 146 n y C2A N1A GRA doub 147 n y C8A N7A GRA doub 148 n y N7A C5A GRA sing 149 n y C5A C6A GRA doub 150 n y C6A N6A GRA sing 151 n n C6A N1A GRA sing 152 n y C5X O5X GRA sing 153 n n O5X P1A GRA sing 154 n n P1A O1A GRA sing 155 n n P1A O2A GRA doub 156 n n P1A O3A GRA sing 157 n n O3A P2A GRA sing 158 n n P2A O4A GRA sing 159 n n P2A O5A GRA doub 160 n n P2A O6A GRA sing 161 n n O6A C13 GRA sing 162 n n C13 C12 GRA sing 163 n n C12 C15 GRA sing 164 n n C12 C16 GRA sing 165 n n C12 C14 GRA sing 166 n n C14 O1 GRA sing 167 n n C14 C1 GRA sing 168 n n C1 O2 GRA doub 169 n n C1 N1 GRA sing 170 n n N1 C2 GRA sing 171 n n C2 C3 GRA sing 172 n n C3 C4 GRA sing 173 n n C4 O3 GRA doub 174 n n C4 N2 GRA sing 175 n n N2 C5 GRA sing 176 n n C5 C6 GRA sing 177 n n C6 S1 GRA sing 178 n n S1 C7 GRA sing 179 n n C7 O4 GRA doub 180 n n C7 C8 GRA sing 181 n n C8 C9 GRA sing 182 n n C9 C10 GRA sing 183 n n C10 C11 GRA sing 184 n n C11 O5 GRA doub 185 n n C11 O6 GRA sing 186 n n O9A HO9A GRA sing 187 n n O7A HO7A GRA sing 188 n n C3X H3X GRA sing 189 n n C2X H2X GRA sing 190 n n O2X HO2X GRA sing 191 n n C4X H4X GRA sing 192 n n C1X H1X GRA sing 193 n n C2A H2A GRA sing 194 n n C8A H8A GRA sing 195 n n N6A HN6A GRA sing 196 n n N6A HN6B GRA sing 197 n n C5X H5X GRA sing 198 n n C5X H5XA GRA sing 199 n n O1A HO1A GRA sing 200 n n O4A HO4A GRA sing 201 n n C13 H13 GRA sing 202 n n C13 H13A GRA sing 203 n n C15 H15 GRA sing 204 n n C15 H15A GRA sing 205 n n C15 H15B GRA sing 206 n n C16 H16 GRA sing 207 n n C16 H16A GRA sing 208 n n C16 H16B GRA sing 209 n n C14 H14 GRA sing 210 n n O1 HO1 GRA sing 211 n n N1 HN1 GRA sing 212 n n C2 H2 GRA sing 213 n n C2 H2B GRA sing 214 n n C3 H3 GRA sing 215 n n C3 H3A GRA sing 216 n n N2 HN2 GRA sing 217 n n C5 H5 GRA sing 218 n n C5 H5A GRA sing 219 n n C6 H6 GRA sing 220 n n C6 H6A GRA sing 221 n n C8 H8 GRA sing 222 n n C8 H8B GRA sing 223 n n C9 H9 GRA sing 224 n n C9 H9A GRA sing 225 n n C10 H10 GRA sing 226 n n C10 H10A GRA sing 227 n n O6 HO6 GRA sing 228 n n # _atom_sites.entry_id 8H6D _atom_sites.fract_transf_matrix[1][1] 0.005706 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GRA C 1 701 1 GRA GRA . J 2 GRA D 1 701 1 GRA GRA . K 2 GRA E 1 701 1 GRA GRA . L 2 GRA F 1 701 1 GRA GRA . M 2 GRA B 1 701 1 GRA GRA . N 2 GRA A 1 701 1 GRA GRA . O 2 GRA G 1 701 1 GRA GRA . P 2 GRA H 1 701 1 GRA GRA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O9A GRA . . . J 2 -55.988 28.965 -19.675 1 84.06 ? O9A GRA 701 D 1 HETATM 2 P P3X GRA . . . J 2 -57.049 29.626 -18.813 1 99.52 ? P3X GRA 701 D 1 HETATM 3 O O7A GRA . . . J 2 -58.1 28.604 -18.39 1 84.77 ? O7A GRA 701 D 1 HETATM 4 O O8A GRA . . . J 2 -57.734 30.666 -19.674 1 110.61 ? O8A GRA 701 D 1 HETATM 5 O O3X GRA . . . J 2 -56.396 30.336 -17.536 1 79.34 ? O3X GRA 701 D 1 HETATM 6 C C3X GRA . . . J 2 -56.352 29.741 -16.218 1 78.95 ? C3X GRA 701 D 1 HETATM 7 C C2X GRA . . . J 2 -57.666 29.792 -15.455 1 80.12 ? C2X GRA 701 D 1 HETATM 8 O O2X GRA . . . J 2 -58.811 29.979 -16.344 1 70.81 ? O2X GRA 701 D 1 HETATM 9 C C4X GRA . . . J 2 -55.892 28.281 -16.208 1 79.49 ? C4X GRA 701 D 1 HETATM 10 O O4X GRA . . . J 2 -56.529 27.671 -15.083 1 76.58 ? O4X GRA 701 D 1 HETATM 11 C C1X GRA . . . J 2 -57.665 28.432 -14.736 1 75.96 ? C1X GRA 701 D 1 HETATM 12 N N9A GRA . . . J 2 -57.571 28.638 -13.32 1 70.09 ? N9A GRA 701 D 1 HETATM 13 C C4A GRA . . . J 2 -56.606 29.326 -12.676 1 68.63 ? C4A GRA 701 D 1 HETATM 14 N N3A GRA . . . J 2 -55.507 29.976 -13.08 1 65.97 ? N3A GRA 701 D 1 HETATM 15 C C2A GRA . . . J 2 -54.764 30.572 -12.168 1 67.83 ? C2A GRA 701 D 1 HETATM 16 C C8A GRA . . . J 2 -58.455 28.188 -12.415 1 69.8 ? C8A GRA 701 D 1 HETATM 17 N N7A GRA . . . J 2 -58.073 28.582 -11.186 1 75.26 ? N7A GRA 701 D 1 HETATM 18 C C5A GRA . . . J 2 -56.93 29.29 -11.316 1 74.63 ? C5A GRA 701 D 1 HETATM 19 C C6A GRA . . . J 2 -56.109 29.923 -10.403 1 75 ? C6A GRA 701 D 1 HETATM 20 N N6A GRA . . . J 2 -56.382 29.91 -9.084 1 66.79 ? N6A GRA 701 D 1 HETATM 21 N N1A GRA . . . J 2 -55.028 30.567 -10.841 1 70.8 ? N1A GRA 701 D 1 HETATM 22 C C5X GRA . . . J 2 -54.376 28.148 -15.917 1 61.4 ? C5X GRA 701 D 1 HETATM 23 O O5X GRA . . . J 2 -53.796 29.418 -16.174 1 51.7 ? O5X GRA 701 D 1 HETATM 24 P P1A GRA . . . J 2 -52.197 29.324 -16.276 1 44.11 ? P1A GRA 701 D 1 HETATM 25 O O1A GRA . . . J 2 -51.755 28.148 -17.086 1 38.58 ? O1A GRA 701 D 1 HETATM 26 O O2A GRA . . . J 2 -51.663 30.595 -16.837 1 40.93 ? O2A GRA 701 D 1 HETATM 27 O O3A GRA . . . J 2 -51.618 29.118 -14.727 1 44.88 ? O3A GRA 701 D 1 HETATM 28 P P2A GRA . . . J 2 -50.941 30.287 -13.828 1 40.59 ? P2A GRA 701 D 1 HETATM 29 O O4A GRA . . . J 2 -49.488 30.503 -14.22 1 35.58 ? O4A GRA 701 D 1 HETATM 30 O O5A GRA . . . J 2 -51.724 31.535 -14.093 1 43.7 ? O5A GRA 701 D 1 HETATM 31 O O6A GRA . . . J 2 -51.197 29.966 -12.307 1 44.63 ? O6A GRA 701 D 1 HETATM 32 C C13 GRA . . . J 2 -51.232 28.673 -11.799 1 39.96 ? C13 GRA 701 D 1 HETATM 33 C C12 GRA . . . J 2 -51.091 28.821 -10.301 1 40.13 ? C12 GRA 701 D 1 HETATM 34 C C15 GRA . . . J 2 -52.258 28.113 -9.609 1 38.6 ? C15 GRA 701 D 1 HETATM 35 C C16 GRA . . . J 2 -49.704 28.265 -9.848 1 35.26 ? C16 GRA 701 D 1 HETATM 36 C C14 GRA . . . J 2 -51.135 30.324 -9.973 1 38.75 ? C14 GRA 701 D 1 HETATM 37 O O1 GRA . . . J 2 -52.472 30.778 -10.064 1 45.08 ? O1 GRA 701 D 1 HETATM 38 C C1 GRA . . . J 2 -50.628 30.633 -8.58 1 33.91 ? C1 GRA 701 D 1 HETATM 39 O O2 GRA . . . J 2 -49.473 30.961 -8.45 1 37.55 ? O2 GRA 701 D 1 HETATM 40 N N1 GRA . . . J 2 -51.439 30.572 -7.533 1 32.28 ? N1 GRA 701 D 1 HETATM 41 C C2 GRA . . . J 2 -50.952 30.897 -6.17 1 30.89 ? C2 GRA 701 D 1 HETATM 42 C C3 GRA . . . J 2 -50.551 29.612 -5.421 1 35.24 ? C3 GRA 701 D 1 HETATM 43 C C4 GRA . . . J 2 -51.523 28.509 -5.733 1 39.04 ? C4 GRA 701 D 1 HETATM 44 O O3 GRA . . . J 2 -52.666 28.842 -6.015 1 39.62 ? O3 GRA 701 D 1 HETATM 45 N N2 GRA . . . J 2 -51.089 27.245 -5.701 1 39.42 ? N2 GRA 701 D 1 HETATM 46 C C5 GRA . . . J 2 -51.97 26.123 -5.994 1 36.28 ? C5 GRA 701 D 1 HETATM 47 C C6 GRA . . . J 2 -52.11 25.181 -4.77 1 39.35 ? C6 GRA 701 D 1 HETATM 48 S S1 GRA . . . J 2 -50.488 24.715 -3.991 1 43.27 ? S1 GRA 701 D 1 HETATM 49 C C7 GRA . . . J 2 -50.549 22.963 -3.771 1 40.51 ? C7 GRA 701 D 1 HETATM 50 O O4 GRA . . . J 2 -50.078 22.255 -4.627 1 38.07 ? O4 GRA 701 D 1 HETATM 51 C C8 GRA . . . J 2 -51.194 22.39 -2.521 1 40.99 ? C8 GRA 701 D 1 HETATM 52 C C9 GRA . . . J 2 -50.794 22.965 -1.109 1 34.92 ? C9 GRA 701 D 1 HETATM 53 C C10 GRA . . . J 2 -51.655 22.347 -0.006 1 36.55 ? C10 GRA 701 D 1 HETATM 54 C C11 GRA . . . J 2 -52.965 23.046 0.286 1 42.15 ? C11 GRA 701 D 1 HETATM 55 O O5 GRA . . . J 2 -53.333 23.978 -0.42 1 47.09 ? O5 GRA 701 D 1 HETATM 56 O O6 GRA . . . J 2 -53.666 22.646 1.281 1 35.78 ? O6 GRA 701 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 56 #