data_8H6D
#
_model_server_result.job_id            jNQ6UWR7tLtFEyXaJFAZWA 
_model_server_result.datetime_utc      '2024-11-13 18:05:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8h6d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":701}' 
#
_entry.id    8H6D 
#
_exptl.entry_id    8H6D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              881.633 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'glutaryl-coenzyme A' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8H6D 
_cell.length_a            175.265 
_cell.length_b            175.265 
_cell.length_c            175.265 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8H6D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C26 H42 N7 O19 P3 S' 
_chem_comp.formula_weight    881.633 
_chem_comp.id                GRA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'glutaryl-coenzyme A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O9A P3X GRA sing 129 n n 
P3X O7A GRA sing 130 n n 
P3X O8A GRA doub 131 n n 
P3X O3X GRA sing 132 n n 
O3X C3X GRA sing 133 n n 
C3X C2X GRA sing 134 n n 
C3X C4X GRA sing 135 n n 
C2X O2X GRA sing 136 n n 
C2X C1X GRA sing 137 n n 
C4X O4X GRA sing 138 n n 
C4X C5X GRA sing 139 n n 
O4X C1X GRA sing 140 n n 
C1X N9A GRA sing 141 n n 
N9A C4A GRA sing 142 n y 
N9A C8A GRA sing 143 n y 
C4A N3A GRA doub 144 n y 
C4A C5A GRA sing 145 n y 
N3A C2A GRA sing 146 n y 
C2A N1A GRA doub 147 n y 
C8A N7A GRA doub 148 n y 
N7A C5A GRA sing 149 n y 
C5A C6A GRA doub 150 n y 
C6A N6A GRA sing 151 n n 
C6A N1A GRA sing 152 n y 
C5X O5X GRA sing 153 n n 
O5X P1A GRA sing 154 n n 
P1A O1A GRA sing 155 n n 
P1A O2A GRA doub 156 n n 
P1A O3A GRA sing 157 n n 
O3A P2A GRA sing 158 n n 
P2A O4A GRA sing 159 n n 
P2A O5A GRA doub 160 n n 
P2A O6A GRA sing 161 n n 
O6A C13 GRA sing 162 n n 
C13 C12 GRA sing 163 n n 
C12 C15 GRA sing 164 n n 
C12 C16 GRA sing 165 n n 
C12 C14 GRA sing 166 n n 
C14 O1 GRA sing 167 n n 
C14 C1 GRA sing 168 n n 
C1 O2 GRA doub 169 n n 
C1 N1 GRA sing 170 n n 
N1 C2 GRA sing 171 n n 
C2 C3 GRA sing 172 n n 
C3 C4 GRA sing 173 n n 
C4 O3 GRA doub 174 n n 
C4 N2 GRA sing 175 n n 
N2 C5 GRA sing 176 n n 
C5 C6 GRA sing 177 n n 
C6 S1 GRA sing 178 n n 
S1 C7 GRA sing 179 n n 
C7 O4 GRA doub 180 n n 
C7 C8 GRA sing 181 n n 
C8 C9 GRA sing 182 n n 
C9 C10 GRA sing 183 n n 
C10 C11 GRA sing 184 n n 
C11 O5 GRA doub 185 n n 
C11 O6 GRA sing 186 n n 
O9A HO9A GRA sing 187 n n 
O7A HO7A GRA sing 188 n n 
C3X H3X GRA sing 189 n n 
C2X H2X GRA sing 190 n n 
O2X HO2X GRA sing 191 n n 
C4X H4X GRA sing 192 n n 
C1X H1X GRA sing 193 n n 
C2A H2A GRA sing 194 n n 
C8A H8A GRA sing 195 n n 
N6A HN6A GRA sing 196 n n 
N6A HN6B GRA sing 197 n n 
C5X H5X GRA sing 198 n n 
C5X H5XA GRA sing 199 n n 
O1A HO1A GRA sing 200 n n 
O4A HO4A GRA sing 201 n n 
C13 H13 GRA sing 202 n n 
C13 H13A GRA sing 203 n n 
C15 H15 GRA sing 204 n n 
C15 H15A GRA sing 205 n n 
C15 H15B GRA sing 206 n n 
C16 H16 GRA sing 207 n n 
C16 H16A GRA sing 208 n n 
C16 H16B GRA sing 209 n n 
C14 H14 GRA sing 210 n n 
O1 HO1 GRA sing 211 n n 
N1 HN1 GRA sing 212 n n 
C2 H2 GRA sing 213 n n 
C2 H2B GRA sing 214 n n 
C3 H3 GRA sing 215 n n 
C3 H3A GRA sing 216 n n 
N2 HN2 GRA sing 217 n n 
C5 H5 GRA sing 218 n n 
C5 H5A GRA sing 219 n n 
C6 H6 GRA sing 220 n n 
C6 H6A GRA sing 221 n n 
C8 H8 GRA sing 222 n n 
C8 H8B GRA sing 223 n n 
C9 H9 GRA sing 224 n n 
C9 H9A GRA sing 225 n n 
C10 H10 GRA sing 226 n n 
C10 H10A GRA sing 227 n n 
O6 HO6 GRA sing 228 n n 
#
_atom_sites.entry_id                     8H6D 
_atom_sites.fract_transf_matrix[1][1]    0.005706 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005706 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 GRA C 1 701 1 GRA GRA . 
J 2 GRA D 1 701 1 GRA GRA . 
K 2 GRA E 1 701 1 GRA GRA . 
L 2 GRA F 1 701 1 GRA GRA . 
M 2 GRA B 1 701 1 GRA GRA . 
N 2 GRA A 1 701 1 GRA GRA . 
O 2 GRA G 1 701 1 GRA GRA . 
P 2 GRA H 1 701 1 GRA GRA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O9A GRA . . . M 2 -50.974 18.765 33.797 1 93.53 ? O9A GRA 701 B 1 
HETATM 2 P P3X GRA . . . M 2 -52.431 18.638 33.371 1 108.72 ? P3X GRA 701 B 1 
HETATM 3 O O7A GRA . . . M 2 -52.533 18.402 31.869 1 93.08 ? O7A GRA 701 B 1 
HETATM 4 O O8A GRA . . . M 2 -53.201 19.908 33.689 1 102.15 ? O8A GRA 701 B 1 
HETATM 5 O O3X GRA . . . M 2 -53.07 17.432 34.176 1 68.58 ? O3X GRA 701 B 1 
HETATM 6 C C3X GRA . . . M 2 -52.306 16.248 34.425 1 67.72 ? C3X GRA 701 B 1 
HETATM 7 C C2X GRA . . . M 2 -53.286 15.132 34.647 1 74.91 ? C2X GRA 701 B 1 
HETATM 8 O O2X GRA . . . M 2 -54.523 15.723 35.151 1 77.91 ? O2X GRA 701 B 1 
HETATM 9 C C4X GRA . . . M 2 -51.435 15.813 33.25 1 73.43 ? C4X GRA 701 B 1 
HETATM 10 O O4X GRA . . . M 2 -52.163 14.764 32.582 1 73.57 ? O4X GRA 701 B 1 
HETATM 11 C C1X GRA . . . M 2 -53.41 14.598 33.224 1 71.36 ? C1X GRA 701 B 1 
HETATM 12 N N9A GRA . . . M 2 -53.667 13.185 33.342 1 67.65 ? N9A GRA 701 B 1 
HETATM 13 C C4A GRA . . . M 2 -52.751 12.242 33.688 1 67.26 ? C4A GRA 701 B 1 
HETATM 14 N N3A GRA . . . M 2 -51.429 12.284 33.975 1 57.31 ? N3A GRA 701 B 1 
HETATM 15 C C2A GRA . . . M 2 -50.835 11.142 34.292 1 59.14 ? C2A GRA 701 B 1 
HETATM 16 C C8A GRA . . . M 2 -54.862 12.569 33.168 1 63.48 ? C8A GRA 701 B 1 
HETATM 17 N N7A GRA . . . M 2 -54.726 11.245 33.393 1 61.01 ? N7A GRA 701 B 1 
HETATM 18 C C5A GRA . . . M 2 -53.438 11.009 33.72 1 68.31 ? C5A GRA 701 B 1 
HETATM 19 C C6A GRA . . . M 2 -52.749 9.851 34.048 1 65.31 ? C6A GRA 701 B 1 
HETATM 20 N N6A GRA . . . M 2 -53.38 8.66 34.075 1 54.3 ? N6A GRA 701 B 1 
HETATM 21 N N1A GRA . . . M 2 -51.444 9.93 34.338 1 64.51 ? N1A GRA 701 B 1 
HETATM 22 C C5X GRA . . . M 2 -50.073 15.238 33.737 1 65.83 ? C5X GRA 701 B 1 
HETATM 23 O O5X GRA . . . M 2 -49.125 15.508 32.709 1 50.63 ? O5X GRA 701 B 1 
HETATM 24 P P1A GRA . . . M 2 -47.594 15.254 33.144 1 39.61 ? P1A GRA 701 B 1 
HETATM 25 O O1A GRA . . . M 2 -46.608 15.737 32.127 1 39.57 ? O1A GRA 701 B 1 
HETATM 26 O O2A GRA . . . M 2 -47.354 15.806 34.505 1 39.99 ? O2A GRA 701 B 1 
HETATM 27 O O3A GRA . . . M 2 -47.398 13.62 33.257 1 46.18 ? O3A GRA 701 B 1 
HETATM 28 P P2A GRA . . . M 2 -46.193 12.825 34.004 1 44.78 ? P2A GRA 701 B 1 
HETATM 29 O O4A GRA . . . M 2 -45.014 13.777 34.149 1 39.94 ? O4A GRA 701 B 1 
HETATM 30 O O5A GRA . . . M 2 -46.783 12.359 35.31 1 45.12 ? O5A GRA 701 B 1 
HETATM 31 O O6A GRA . . . M 2 -45.91 11.518 33.163 1 43.51 ? O6A GRA 701 B 1 
HETATM 32 C C13 GRA . . . M 2 -47.061 10.9 32.638 1 43.54 ? C13 GRA 701 B 1 
HETATM 33 C C12 GRA . . . M 2 -47.089 9.402 32.827 1 42.19 ? C12 GRA 701 B 1 
HETATM 34 C C15 GRA . . . M 2 -48.459 8.874 32.412 1 43.6 ? C15 GRA 701 B 1 
HETATM 35 C C16 GRA . . . M 2 -46.012 8.749 31.9 1 41.86 ? C16 GRA 701 B 1 
HETATM 36 C C14 GRA . . . M 2 -46.818 9.111 34.322 1 40.43 ? C14 GRA 701 B 1 
HETATM 37 O O1 GRA . . . M 2 -47.99 9.34 35.098 1 39.3 ? O1 GRA 701 B 1 
HETATM 38 C C1 GRA . . . M 2 -46.34 7.678 34.569 1 42.28 ? C1 GRA 701 B 1 
HETATM 39 O O2 GRA . . . M 2 -45.139 7.397 34.453 1 39.94 ? O2 GRA 701 B 1 
HETATM 40 N N1 GRA . . . M 2 -47.268 6.78 34.924 1 38.35 ? N1 GRA 701 B 1 
HETATM 41 C C2 GRA . . . M 2 -46.939 5.36 35.232 1 38.22 ? C2 GRA 701 B 1 
HETATM 42 C C3 GRA . . . M 2 -46.703 4.454 34.006 1 38.27 ? C3 GRA 701 B 1 
HETATM 43 C C4 GRA . . . M 2 -47.823 4.644 33.019 1 46.26 ? C4 GRA 701 B 1 
HETATM 44 O O3 GRA . . . M 2 -49.003 4.527 33.383 1 42.17 ? O3 GRA 701 B 1 
HETATM 45 N N2 GRA . . . M 2 -47.418 4.952 31.782 1 47.45 ? N2 GRA 701 B 1 
HETATM 46 C C5 GRA . . . M 2 -48.359 5.168 30.707 1 43.58 ? C5 GRA 701 B 1 
HETATM 47 C C6 GRA . . . M 2 -48.847 3.807 30.204 1 45.11 ? C6 GRA 701 B 1 
HETATM 48 S S1 GRA . . . M 2 -48.027 3.513 28.588 1 77.44 ? S1 GRA 701 B 1 
HETATM 49 C C7 GRA . . . M 2 -48.097 1.767 28.635 1 62 ? C7 GRA 701 B 1 
HETATM 50 O O4 GRA . . . M 2 -47.141 1.091 28.32 1 60.43 ? O4 GRA 701 B 1 
HETATM 51 C C8 GRA . . . M 2 -49.432 1.26 29.115 1 51.32 ? C8 GRA 701 B 1 
HETATM 52 C C9 GRA . . . M 2 -49.732 -0.176 28.573 1 52.98 ? C9 GRA 701 B 1 
HETATM 53 C C10 GRA . . . M 2 -49.616 -0.203 27.052 1 56.08 ? C10 GRA 701 B 1 
HETATM 54 C C11 GRA . . . M 2 -49.639 -1.543 26.337 1 64.7 ? C11 GRA 701 B 1 
HETATM 55 O O5 GRA . . . M 2 -48.637 -1.934 25.728 1 63.37 ? O5 GRA 701 B 1 
HETATM 56 O O6 GRA . . . M 2 -50.735 -2.227 26.371 1 52.74 ? O6 GRA 701 B 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           61 
_model_server_stats.create_model_time_ms    105 
_model_server_stats.query_time_ms           566 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           56 
#